PRGDB00048615 (putative NBS-LRR disease resistance protein RIT-1)

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putative NBS-LRR disease resistance protein RIT-1
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 111608619 (DQ849027)
Gene Class NL
Domain Type NBS, LRR
Gene Species Ipomoea trifida

Comment?

Ipomoea trifida putative NBS-LRR disease resistance protein RIT-1 gene, partial cds.

DNA Sequence

GGTGGTGTGGGTAAGACTACCCTTGCAAAAGCCATATTTAACAAAATTTATAGAATGTTCCAAGGTAGTAGCTTTCTTGCTGATGTTAGATCAAAAGGTTTAGACCGCTTACAAGAGAAGCTTCTTTGTGAAACTCTCAAGACAAAGAAATTTGAAGTTGACAATGTTCATCGGGGAACTAGTTTGGTCAAAAAAAGACTTGGATTAAAAAAGCTTCTCATTGTTGTTGATGATGTAAACCATATAAATCAATTAGAAGCATTAGTTGGAGAGCGTGATTGGTTTGGTCCAGGTAGCGTAATTATAATTACGACCAGAGATGTTCACTTGCTAAATTGCCTTGGAATAGATGAAAAGTATGAAGTTAAAAGGTTAAGTACCTGGGAATCTTTGCAAGTCTTTAGTTTGCATGCATTTGGGAATCCAGTCCCGTTGGCGGCTTATGCAGAACTGTCAGATATGATAGTAAGTTATTCTTTGGGACTTCCTCTGGCT


Protein sequences

Name Description Sequence
putative NBS-LRR disease resistance protein RIT-1 putative NBS-LRR disease resistance protein RIT-1 [Ipomoea trifida].

GGVGKTTLAKAIFNKIYRMFQGSSFLADVRSKGLDRLQEKLLCETLKTKKFEVDNVHRGTSLVKKRLGLKKLLIVVDDVNHINQLEALVGERDWFGPGSVIIITTRDVHLLNCLGIDEKYEVKRLSTWESLQVFSLHAFGNPVPLAAYAELSDMIVSYSLGLPLA


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017
1-165 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GGVGKTTLAKAIFNKIYRMFQGSSFLADVRSKGLDRLQEKLLCETLKTKKFEVDNVHRGTSLVKKRLGLKKLLIVVDDVNHINQLEALVGERDWFGPGSVIIITTRDVHLLNCLGIDEKYEVKRLSTWESLQVFSLHAFGNPVPLAAYAELSDMIVSYSLGLPLA

superfamily: SSF52540
1-165 SSF52540

GGVGKTTLAKAIFNKIYRMFQGSSFLADVRSKGLDRLQEKLLCETLKTKKFEVDNVHRGTSLVKKRLGLKKLLIVVDDVNHINQLEALVGERDWFGPGSVIIITTRDVHLLNCLGIDEKYEVKRLSTWESLQVFSLHAFGNPVPLAAYAELSDMIVSYSLGLPLA

HMMPfam: PF00931
IPR002182
1-165 NB-ARC,NBS
NB-ARC

GGVGKTTLAKAIFNKIYRMFQGSSFLADVRSKGLDRLQEKLLCETLKTKKFEVDNVHRGTSLVKKRLGLKKLLIVVDDVNHINQLEALVGERDWFGPGSVIIITTRDVHLLNCLGIDEKYEVKRLSTWESLQVFSLHAFGNPVPLAAYAELSDMIVSYSLGLPLA

HMMPanther: PTHR11017:SF20
1-165 PTHR11017:SF20,SUBFAMILY NOT NAMED

GGVGKTTLAKAIFNKIYRMFQGSSFLADVRSKGLDRLQEKLLCETLKTKKFEVDNVHRGTSLVKKRLGLKKLLIVVDDVNHINQLEALVGERDWFGPGSVIIITTRDVHLLNCLGIDEKYEVKRLSTWESLQVFSLHAFGNPVPLAAYAELSDMIVSYSLGLPLA

Gene3D: G3DSA:3.40.50.300
2-114 G3DSA:3.40.50.300

GVGKTTLAKAIFNKIYRMFQGSSFLADVRSKGLDRLQEKLLCETLKTKKFEVDNVHRGTSLVKKRLGLKKLLIVVDDVNHINQLEALVGERDWFGPGSVIIITTRDVHLLNCL






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Analyses

Blast

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