PRGDB00048632 (disease resistance protein RPM1, putative)

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disease resistance protein RPM1, putative
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 108862058 (DP000011)
Gene Class NL
Domain Type NBS, LRR, LRR
Gene Species Oryza sativa Japonica Group

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Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence.

DNA Sequence

AAGCATTAAACAGAAAGATCTTTGGGTGCTTGGGGGCTTGCCCTCACTGCTGAAGCTTGAGCTACATTTACTCTATGGCCCTGATGAAAGGCTGATTATCAGCAGTCAACTATTCCAGTGCTTGAAGAAGTTCAAATTGAAATATGAATTGGGTGGTGGACTAAGCATGGTGTGTGAAAAGGAAGCAATGCCAAAGCTCCAAATGCTACACCTTCGGTTTAAAGCAATGGAAACGAAGTCCAATACGGGTTTCGAGTTGAGGCTCGAGCACCTTTCAAGCCTGCGGCACCTCAGTGTCACAGTTGATTGTGATGATGCCACTAGAAGGAGAGTTGAGGCTGCCGAAGCCACCATTCGGAACACAGTGAGAATCCACCCTCGATGCCCCACTCTAGAAATCAAAAGGAAGTGGGAAAGCGATATGGTAAAGGATGAGGATGAGGATGAGATGGAGAGACGGGAGTGCACTATAGAAGAGGAGGAGGTTCAGCATCAGGATCCATAAATGAAGGATATACTGCTGCTTAGCTATTATGACCTTCCATATCATCTGAAGACTTGCTTGCTGTATCTTAGTATATTTCCAGAGGATTACTGGATTAGTAAAGTAGATCTGTTATTGAGATGGATAGCTGAAGGATTCATTCCTGAAGTGAAGGATCAGGCATTGTATCAAGTTGCAGAGAATTACTTTAATGAGCTTATAAACAGAAGCATGATTCAGCCAGTCAACATCGACTATGATGGTAGCGCAAATGCATGTCGAATGCATGATGTAATGCTTGAGCTGATCGTATCCCTGTCTGAAGATGAGAACTTCAATACATTAGTAGATGGGAAGGTGTATAAATGTTCTTCTAGCAATATTCGCAGACTCTCCCTCCAATCCAGCTGTGTGGAAAATGATGTGATGCAGGATTTAATGAACAAGTGCTCACATATTCGCTCTCTTAGCTTCTTTCGGGAAAATAAAGAAACACCTCATCTCCCAAAGTTCCGTTATCTGAGAGTATTGATATTTGAGGATTGTGATAGCTTAGGAAACCAACATATTAAATATCTCAGATTCTTTTGCCAATTAAAGTTTTTGAGAATCAATTCTGAAGGTATCACTGAGCTTCCGGATAAAATTGGCGACCTGAAAAATTTACAAACACTGAACATACATGGAAGTAAAATTGGAAAACTTCCAGCAGCCATAGGCCATTTACAAAATTTGTTGTATCTACATGTTAATTCTGATGTTGAATTACCTGATGAGGTTGGAGATCTACAAGCTTTGCAGGTGCTGTCAGATGCTTTCTCTTATAACTCTATTAAATTCGTGGAAGAGCTTAGGCGGCTTACTAAGCTAAGGTCGCTTCACATTGGACTACATTCCAGTTTAAAACTTTGTTATCATGACATGAGAACGTATGAGGAAGCTTTGAAATCCTCTCTAACTGTGTTAGGTAAACACAGTCTTCGATCACTAGTAATTTCACGTGCTGATTGCCTGGGTGATTACCTGATGGATCTATTATGTGACACTGTCCCTGTCTCCAA


Protein sequences

Name Description Sequence
disease resistance protein RPM1, putative disease resistance protein RPM1, putative [Oryza sativa (japonica cultivar-group)].

MKDILLLSYYDLPYHLKTCLLYLSIFPEDYWISKVDLLLRWIAEGFIPEVKDQALYQVAENYFNELINRSMIQPVNIDYDGSANACRMHDVMLELIVSLSEDENFNTLVDGKVYKCSSSNIRRLSLQSSCVENDVMQDLMNKCSHIRSLSFFRENKETPHLPKFRYLRVLIFEDCDSLGNQHIKYLRFFCQLKFLRINSEGITELPDKIGDLKNLQTLNIHGSKIGKLPAAIGHLQNLLYLHVNSDVELPDEVGDLQALQVLSDAFSYNSIKFVEELRRLTKLRSLHIGLHSSLKLCYHDMRTYEEALKSSLTVLGKHSLRSLVISRADCLGDYLMDLLCDTVPVSKSIKQKDLWVLGGLPSLLKLELHLLYGPDERLIISSQLFQCLKKFKLKYELGGGLSMVCEKEAMPKLQMLHLRFKAMETKSNTGFELRLEHLSSLRHLSVTVDCDDATRRRVEAAEATIRNTVRIHPRCPTLEIKRKWESDMVKDEDEDEMERRECTIEEEEVQHQDP


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF224
1-493 PTHR23155:SF224,OS12G0273300 PROTEIN

MKDILLLSYYDLPYHLKTCLLYLSIFPEDYWISKVDLLLRWIAEGFIPEVKDQALYQVAENYFNELINRSMIQPVNIDYDGSANACRMHDVMLELIVSLSEDENFNTLVDGKVYKCSSSNIRRLSLQSSCVENDVMQDLMNKCSHIRSLSFFRENKETPHLPKFRYLRVLIFEDCDSLGNQHIKYLRFFCQLKFLRINSEGITELPDKIGDLKNLQTLNIHGSKIGKLPAAIGHLQNLLYLHVNSDVELPDEVGDLQALQVLSDAFSYNSIKFVEELRRLTKLRSLHIGLHSSLKLCYHDMRTYEEALKSSLTVLGKHSLRSLVISRADCLGDYLMDLLCDTVPVSKSIKQKDLWVLGGLPSLLKLELHLLYGPDERLIISSQLFQCLKKFKLKYELGGGLSMVCEKEAMPKLQMLHLRFKAMETKSNTGFELRLEHLSSLRHLSVTVDCDDATRRRVEAAEATIRNTVRIHPRCPTLEIKRKWESDMVKDED

HMMPanther: PTHR23155
1-493 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

MKDILLLSYYDLPYHLKTCLLYLSIFPEDYWISKVDLLLRWIAEGFIPEVKDQALYQVAENYFNELINRSMIQPVNIDYDGSANACRMHDVMLELIVSLSEDENFNTLVDGKVYKCSSSNIRRLSLQSSCVENDVMQDLMNKCSHIRSLSFFRENKETPHLPKFRYLRVLIFEDCDSLGNQHIKYLRFFCQLKFLRINSEGITELPDKIGDLKNLQTLNIHGSKIGKLPAAIGHLQNLLYLHVNSDVELPDEVGDLQALQVLSDAFSYNSIKFVEELRRLTKLRSLHIGLHSSLKLCYHDMRTYEEALKSSLTVLGKHSLRSLVISRADCLGDYLMDLLCDTVPVSKSIKQKDLWVLGGLPSLLKLELHLLYGPDERLIISSQLFQCLKKFKLKYELGGGLSMVCEKEAMPKLQMLHLRFKAMETKSNTGFELRLEHLSSLRHLSVTVDCDDATRRRVEAAEATIRNTVRIHPRCPTLEIKRKWESDMVKDED

HMMPfam: PF00931
IPR002182
3-50 NB-ARC,NBS
NB-ARC

DILLLSYYDLPYHLKTCLLYLSIFPEDYWISKVDLLLRWIAEGFIPEV

Gene3D: G3DSA:3.80.10.10
115-288 G3DSA:3.80.10.10

KCSSSNIRRLSLQSSCVENDVMQDLMNKCSHIRSLSFFRENKETPHLPKFRYLRVLIFEDCDSLGNQHIKYLRFFCQLKFLRINSEGITELPDKIGDLKNLQTLNIHGSKIGKLPAAIGHLQNLLYLHVNSDVELPDEVGDLQALQVLSDAFSYNSIKFVEELRRLTKLRSLHI

superfamily: SSF52047
119-501 SSF52047,LRR

SNIRRLSLQSSCVENDVMQDLMNKCSHIRSLSFFRENKETPHLPKFRYLRVLIFEDCDSLGNQHIKYLRFFCQLKFLRINSEGITELPDKIGDLKNLQTLNIHGSKIGKLPAAIGHLQNLLYLHVNSDVELPDEVGDLQALQVLSDAFSYNSIKFVEELRRLTKLRSLHIGLHSSLKLCYHDMRTYEEALKSSLTVLGKHSLRSLVISRADCLGDYLMDLLCDTVPVSKSIKQKDLWVLGGLPSLLKLELHLLYGPDERLIISSQLFQCLKKFKLKYELGGGLSMVCEKEAMPKLQMLHLRFKAMETKSNTGFELRLEHLSSLRHLSVTVDCDDATRRRVEAAEATIRNTVRIHPRCPTLEIKRKWESDMVKDEDEDEMERRE


List of References


The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
BMC Biol.: 2005, 3();20
PubMed:16188032 WorldCat.org DOI (I e)





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