PRGDB00048638 (NBS-LRR type disease resistance protein, putative, expressed)

From PRG Wiki
Jump to: navigation, search
NBS-LRR type disease resistance protein, putative, expressed
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 108863896 (DP000010)
Gene Class NL
Domain Type LRR, NBS, LRR, Others
Gene Species Oryza sativa Japonica Group

Comment?

Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence.

DNA Sequence

ATGGCAGAAGCTGTGCTGCTTGCCATCTCAAAGATCAGTACAGCTTTGGGAGATGAAGCCACCAGGGCTGTCATAGCCAAACTCTCCGGAAAAGTATCTAACTTGAGGGAACTTCCTGACAAAGTTGAGTATATCAGAAGGGAATTGCGTCTCATGAAAGATGTAATACAAGATTTAGATTCCACAAATACCAACATGAATGTTGTCAAGGGTTGGATCGACGAACTGCGGAAGCTGGCTTACCGTGTTGAAGACATAATGGACAAGTACTCATACTATGCTTGTCAACGGCAGCAAGAAGGATCAGTGATGAGATGCGTAAGAGGAGCACATTATGCAGGTGTTTTCAGTGAAGTTGCTAGTGAGGTAATGAAGATAAAGGGTGATGTTGAACAGGTTAAAAGACAGCAAATGGAATGGTTACCTACAGTTCAGCTCATTTCAAGAACACCCACTGACATCGAAACACCGCGATCTCAAGGAAGAAGAAAGTTGCTTGAATGTGGCGATCCTGTGGGGATTGAATACAACAGGAAAAGGTTGCTTGAATTACTGTACCCTGAAGAACCAGGCCACAAAGTGATAACAGTGTCTGGTATGGGTGGACTGGGAAAAACCACCCTGGCCTTAGACGTATTTGAACGTGAAAAGATCAAGTTCCCAGTTCATGCCTGGATCACTGTGTCACAGACTTGCACGATCCTTAGTCTTCTAAGACAGTTAGTCAGTCCGCTCATACCCATGGAACAAGAATCATCAGAATCCAAGGAAGATCTAATCAACAAAATGGGCGTTCATGAATTGACAAAAGAATTAAACAGAAGGACTGAAAACTGTACATCATGTTTGATTGTGCTAGATGATGTCTGGGACCAGAACGTGTACTTCGAAATACAGGGCATGCTTAAGAATCCCCAAGCAAGTCGCATTATCATCACGACACGGATGGAACATGTGGCAGTTCTTGCTCCCTCTGAATGCCATCTCAAGATACAGGCTTTGGGTGAAATTGATGCATTCAACCTTTTCTGCAGAAGGGCATTTTACAACACAAAGGACCATAGGTGCCCGCTGGACCTTGAGAATGTGGCTGCCTCCATAGTAAGTAAGTGTAAGGGGCTGCCCCTAGCACTTGTTACCATGGGTGGCCTGATGTCCACAAAGCTACAAACTGAGCATGCCTGGCAACAAATGTACAACCAGCTTCGGAGTGAGCTGGCCAAAAATGATGATGTCAAGGCAATTCTGAAAGTAAGCTACCATGCATTACCAGCTGACCAAAAGAACTGCTTCTTGTACTGCAGCCTGTTCCCTGAAGATTTTCGCATATCTCGTGAGAGCCTTGTGCGGTACTGGGTTGCAGAAGGTTTTGCGGTGAGAATCGAACACAATAGACCAGAAGATGTGGCCGAAATAAATCTCATGGAACTGATCCACCGGAACATGCTTGAAGTTGACGAGTATGATGAGCTTGGCAAGGTGATCTCTTGTAAGATGCATGACATTGTGCGCAACCTGGCTCTCTCAATTGCTGGACAGGAGAGGTTCGGTTACGCAAATGATTATGGAGCTGTGGAAAAGGTTGATTGGGAAGTCCGTCGTCTGTCATTATTCTTGAACAATGGAAAAGGTTGTGCATCAACAGTGAAATTTCCACATCTTCGCACACTACTTGAAACAACTACACACCCTCCTGGATTGTTATCCTCAATTTTGTCTGAATCCAAATACCTCACTGTCCTAGAGCTACAAGACTCAGATATCACCGAAGTACCAGCATGCATAGGCAAATTGTTTAATTTACGTTACATTGGCTTAAGGCGGACAAGACTCTGCTCACTACCAGAGTCTATTGACAAGCTCTCAAACCTGCAAACTCTGGACATCAAGCAAACTAAAATAGAGAAGCTACCACGTGGAATCACTAAGATCAAGAAGCTGAGGCACCTTCTAGCTGACAGATATGAGGATGAAAATAAGTCAGAGTTCCGGTATTTTATTGGAGTGCAAGCACCCAAATATCTGTCTAAGTTGGAAGAACTTCAGACTCTTGAGACTGTGGAAGCCAGCAAGGACTTGGCCGAGCAGCTGAAGGAACTAATGCAGATAAGAAGTATTTGGATTGACAACATAAGTTCTGCTGATTGTGGAAATATTTTTGCTACACTATCAAATATGCCGCTTCTTTCCAGCTTGCTTCTTTCGGCAAAGGATGAAAATGAGCCACTTTGTTTTGAGGCTCTCCAGCCCATTTCCAATGAACTCCACAGGTTAATTATCAGAGGGCAATGGGCTAAGGGCACACTAGACTACCCGATATTTCATAGCCATGGTACATATCTGAAATATTTAGCTCTAAGTTGGTGTCATCTTGGTGAAGATCCACTGGGGATGCTCGCATCACACTTGTCAAACCTCACTTATCTAAGACTGAACAACATGCACAGTTCGAAAACTTTGGTTCTTGATGCAGAGGCGTTCCCCCACCTGAAGACTCTTGTGTTAATGCACATGCCTGATGTCAACCAGATAAACATCACGGATGGCGCCCTTCCATGCATCGAAGGTTTATACATTGTATCATTGCGGAAGCTGGATAAAGTCCCTCAAGGCATTGAATCCCTTGCCTCCCTAAAGAAGCTCTGTTTGATGGACCTGCACAAAGACTTCAAGACTCAATGGAATGGTGACGTGATGCACCAGAAGATGCTGCATATTGCAGAGATCCATGTAGGGTGGTGA


Protein sequences

Name Description Sequence
NBS-LRR type disease resistance protein, putative, expressed NBS-LRR type disease resistance protein, putative, expressed [Oryza sativa (japonica cultivar-group)].

MAEAVLLAISKISTALGDEATRAVIAKLSGKVSNLRELPDKVEYIRRELRLMKDVIQDLDSTNTNMNVVKGWIDELRKLAYRVEDIMDKYSYYACQRQQEGSVMRCVRGAHYAGVFSEVASEVMKIKGDVEQVKRQQMEWLPTVQLISRTPTDIETPRSQGRRKLLECGDPVGIEYNRKRLLELLYPEEPGHKVITVSGMGGLGKTTLALDVFEREKIKFPVHAWITVSQTCTILSLLRQLVSPLIPMEQESSESKEDLINKMGVHELTKELNRRTENCTSCLIVLDDVWDQNVYFEIQGMLKNPQASRIIITTRMEHVAVLAPSECHLKIQALGEIDAFNLFCRRAFYNTKDHRCPLDLENVAASIVSKCKGLPLALVTMGGLMSTKLQTEHAWQQMYNQLRSELAKNDDVKAILKVSYHALPADQKNCFLYCSLFPEDFRISRESLVRYWVAEGFAVRIEHNRPEDVAEINLMELIHRNMLEVDEYDELGKVISCKMHDIVRNLALSIAGQERFGYANDYGAVEKVDWEVRRLSLFLNNGKGCASTVKFPHLRTLLETTTHPPGLLSSILSESKYLTVLELQDSDITEVPACIGKLFNLRYIGLRRTRLCSLPESIDKLSNLQTLDIKQTKIEKLPRGITKIKKLRHLLADRYEDENKSEFRYFIGVQAPKYLSKLEELQTLETVEASKDLAEQLKELMQIRSIWIDNISSADCGNIFATLSNMPLLSSLLLSAKDENEPLCFEALQPISNELHRLIIRGQWAKGTLDYPIFHSHGTYLKYLALSWCHLGEDPLGMLASHLSNLTYLRLNNMHSSKTLVLDAEAFPHLKTLVLMHMPDVNQINITDGALPCIEGLYIVSLRKLDKVPQGIESLASLKKLCLMDLHKDFKTQWNGDVMHQKMLHIAEIHVGW

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF197
9-909 PTHR23155:SF197,OS11G0227100 PROTEIN

ISKISTALGDEATRAVIAKLSGKVSNLRELPDKVEYIRRELRLMKDVIQDLDSTNTNMNVVKGWIDELRKLAYRVEDIMDKYSYYACQRQQEGSVMRCVRGAHYAGVFSEVASEVMKIKGDVEQVKRQQMEWLPTVQLISRTPTDIETPRSQGRRKLLECGDPVGIEYNRKRLLELLYPEEPGHKVITVSGMGGLGKTTLALDVFEREKIKFPVHAWITVSQTCTILSLLRQLVSPLIPMEQESSESKEDLINKMGVHELTKELNRRTENCTSCLIVLDDVWDQNVYFEIQGMLKNPQASRIIITTRMEHVAVLAPSECHLKIQALGEIDAFNLFCRRAFYNTKDHRCPLDLENVAASIVSKCKGLPLALVTMGGLMSTKLQTEHAWQQMYNQLRSELAKNDDVKAILKVSYHALPADQKNCFLYCSLFPEDFRISRESLVRYWVAEGFAVRIEHNRPEDVAEINLMELIHRNMLEVDEYDELGKVISCKMHDIVRNLALSIAGQERFGYANDYGAVEKVDWEVRRLSLFLNNGKGCASTVKFPHLRTLLETTTHPPGLLSSILSESKYLTVLELQDSDITEVPACIGKLFNLRYIGLRRTRLCSLPESIDKLSNLQTLDIKQTKIEKLPRGITKIKKLRHLLADRYEDENKSEFRYFIGVQAPKYLSKLEELQTLETVEASKDLAEQLKELMQIRSIWIDNISSADCGNIFATLSNMPLLSSLLLSAKDENEPLCFEALQPISNELHRLIIRGQWAKGTLDYPIFHSHGTYLKYLALSWCHLGEDPLGMLASHLSNLTYLRLNNMHSSKTLVLDAEAFPHLKTLVLMHMPDVNQINITDGALPCIEGLYIVSLRKLDKVPQGIESLASLKKLCLMDLHKDFKTQWNGDVMHQKMLHIAEI

HMMPanther: PTHR23155
9-909 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

ISKISTALGDEATRAVIAKLSGKVSNLRELPDKVEYIRRELRLMKDVIQDLDSTNTNMNVVKGWIDELRKLAYRVEDIMDKYSYYACQRQQEGSVMRCVRGAHYAGVFSEVASEVMKIKGDVEQVKRQQMEWLPTVQLISRTPTDIETPRSQGRRKLLECGDPVGIEYNRKRLLELLYPEEPGHKVITVSGMGGLGKTTLALDVFEREKIKFPVHAWITVSQTCTILSLLRQLVSPLIPMEQESSESKEDLINKMGVHELTKELNRRTENCTSCLIVLDDVWDQNVYFEIQGMLKNPQASRIIITTRMEHVAVLAPSECHLKIQALGEIDAFNLFCRRAFYNTKDHRCPLDLENVAASIVSKCKGLPLALVTMGGLMSTKLQTEHAWQQMYNQLRSELAKNDDVKAILKVSYHALPADQKNCFLYCSLFPEDFRISRESLVRYWVAEGFAVRIEHNRPEDVAEINLMELIHRNMLEVDEYDELGKVISCKMHDIVRNLALSIAGQERFGYANDYGAVEKVDWEVRRLSLFLNNGKGCASTVKFPHLRTLLETTTHPPGLLSSILSESKYLTVLELQDSDITEVPACIGKLFNLRYIGLRRTRLCSLPESIDKLSNLQTLDIKQTKIEKLPRGITKIKKLRHLLADRYEDENKSEFRYFIGVQAPKYLSKLEELQTLETVEASKDLAEQLKELMQIRSIWIDNISSADCGNIFATLSNMPLLSSLLLSAKDENEPLCFEALQPISNELHRLIIRGQWAKGTLDYPIFHSHGTYLKYLALSWCHLGEDPLGMLASHLSNLTYLRLNNMHSSKTLVLDAEAFPHLKTLVLMHMPDVNQINITDGALPCIEGLYIVSLRKLDKVPQGIESLASLKKLCLMDLHKDFKTQWNGDVMHQKMLHIAEI

superfamily: SSF52540
152-409 SSF52540

TDIETPRSQGRRKLLECGDPVGIEYNRKRLLELLYPEEPGHKVITVSGMGGLGKTTLALDVFEREKIKFPVHAWITVSQTCTILSLLRQLVSPLIPMEQESSESKEDLINKMGVHELTKELNRRTENCTSCLIVLDDVWDQNVYFEIQGMLKNPQASRIIITTRMEHVAVLAPSECHLKIQALGEIDAFNLFCRRAFYNTKDHRCPLDLENVAASIVSKCKGLPLALVTMGGLMSTKLQTEHAWQQMYNQLRSELAKN

HMMPfam: PF00931
IPR002182
175-458 NB-ARC,NBS
NB-ARC

EYNRKRLLELLYPEEPGHKVITVSGMGGLGKTTLALDVFEREKIKFPVHAWITVSQTCTILSLLRQLVSPLIPMEQESSESKEDLINKMGVHELTKELNRRTENCTSCLIVLDDVWDQNVYFEIQGMLKNPQASRIIITTRMEHVAVLAPSECHLKIQALGEIDAFNLFCRRAFYNTKDHRCPLDLENVAASIVSKCKGLPLALVTMGGLMSTKLQTEHAWQQMYNQLRSELAKNDDVKAILKVSYHALPADQKNCFLYCSLFPEDFRISRESLVRYWVAEGFA

FPrintScan: PR00364
IPR000767
194-209 DISEASERSIST
Disease resistance protein

VITVSGMGGLGKTTLA

FPrintScan: PR00364
IPR000767
276-290 DISEASERSIST
Disease resistance protein

TENCTSCLIVLDDVW

FPrintScan: PR00364
IPR000767
371-385 DISEASERSIST
Disease resistance protein

CKGLPLALVTMGGLM

superfamily: SSF52058
482-905 SSF52058,LRR

MLEVDEYDELGKVISCKMHDIVRNLALSIAGQERFGYANDYGAVEKVDWEVRRLSLFLNNGKGCASTVKFPHLRTLLETTTHPPGLLSSILSESKYLTVLELQDSDITEVPACIGKLFNLRYIGLRRTRLCSLPESIDKLSNLQTLDIKQTKIEKLPRGITKIKKLRHLLADRYEDENKSEFRYFIGVQAPKYLSKLEELQTLETVEASKDLAEQLKELMQIRSIWIDNISSADCGNIFATLSNMPLLSSLLLSAKDENEPLCFEALQPISNELHRLIIRGQWAKGTLDYPIFHSHGTYLKYLALSWCHLGEDPLGMLASHLSNLTYLRLNNMHSSKTLVLDAEAFPHLKTLVLMHMPDVNQINITDGALPCIEGLYIVSLRKLDKVPQGIESLASLKKLCLMDLHKDFKTQWNGDVMHQKMLH

Gene3D: G3DSA:3.80.10.10
550-736 G3DSA:3.80.10.10

KFPHLRTLLETTTHPPGLLSSILSESKYLTVLELQDSDITEVPACIGKLFNLRYIGLRRTRLCSLPESIDKLSNLQTLDIKQTKIEKLPRGITKIKKLRHLLADRYEDENKSEFRYFIGVQAPKYLSKLEELQTLETVEASKDLAEQLKELMQIRSIWIDNISSADCGNIFATLSNMPLLSSLLLSA

FPrintScan: PR00364
IPR000767
619-635 DISEASERSIST
Disease resistance protein

DKLSNLQTLDIKQTKIE

Gene3D: G3DSA:3.80.10.10
779-886 G3DSA:3.80.10.10

TYLKYLALSWCHLGEDPLGMLASHLSNLTYLRLNNMHSSKTLVLDAEAFPHLKTLVLMHMPDVNQINITDGALPCIEGLYIVSLRKLDKVPQGIESLASLKKLCLMDL


List of References


The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
BMC Biol.: 2005, 3();20
PubMed:16188032 WorldCat.org DOI (I e)





List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox