PRGDB00048648 (putative NBS-LRR disease resistance protein)

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putative NBS-LRR disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 108947355 (DQ644420)
Gene Class CNL
Domain Type NBS, LRR
Gene Species Malus floribunda

Comment?

Malus floribunda clone ABGA005056CT putative NBS-LRR disease resistance protein gene, partial cds.

DNA Sequence

TATTGCTCAAAAAGTATTTAATGACAGGAAAATTGAGGAGCGCTTCGAAAGAAGAATTTGGGTATCGGTTTCTCAAAAATTCGATGAAGAACAAATCATGAGAAGTATTTTACGGAACTTGGGAGATGCTAGTGTAGGAGACGACAAGGGTGAATTATCGAAGAAGATAAATGAATATCTTTTAGGCAAGAGGTATTTGATTGTGATGGACGATGTGTGGAGCTTGGATGTTACTTGGTGGCTCAGAATTTATGAAGCATTGCCAAAAGGAAATGGAAGTAGTGTCATCATTACTACGAGGATAGAGAAGGTTGCACAGAAGATGGGAGTGAAGGAAGCAAGATCACATTGGCCCAAATGCCTCAGCAAAGATGATAGTTGGCTGCTATTTCGGAAGATTGCATTTGCGGAAAATGGAGGTGAGTGTATGTATCCAGAGCTGGAAAATGTTGGAAACGAGGTTGTTGAGAAGTGTAAG


Protein sequences

Name Description Sequence
putative NBS-LRR disease resistance protein putative NBS-LRR disease resistance protein [Malus floribunda].

IAQKVFNDRKIEERFERRIWVSVSQKFDEEQIMRSILRNLGDASVGDDKGELSKKINEYLLGKRYLIVMDDVWSLDVTWWLRIYEALPKGNGSSVIITTRIEKVAQKMGVKEARSHWPKCLSKDDSWLLFRKIAFAENGGECMYPELENVGNEVVEKCK


Domains

Domain Start-End Description Sequence

superfamily: SSF52540
1-158 SSF52540

IAQKVFNDRKIEERFERRIWVSVSQKFDEEQIMRSILRNLGDASVGDDKGELSKKINEYLLGKRYLIVMDDVWSLDVTWWLRIYEALPKGNGSSVIITTRIEKVAQKMGVKEARSHWPKCLSKDDSWLLFRKIAFAENGGECMYPELENVGNEVVEKC

HMMPanther: PTHR23155:SF244
1-97 PTHR23155:SF244,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

IAQKVFNDRKIEERFERRIWVSVSQKFDEEQIMRSILRNLGDASVGDDKGELSKKINEYLLGKRYLIVMDDVWSLDVTWWLRIYEALPKGNGSSVII

HMMPanther: PTHR23155
1-97 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

IAQKVFNDRKIEERFERRIWVSVSQKFDEEQIMRSILRNLGDASVGDDKGELSKKINEYLLGKRYLIVMDDVWSLDVTWWLRIYEALPKGNGSSVII

HMMPfam: PF00931
IPR002182
1-159 NB-ARC,NBS
NB-ARC

IAQKVFNDRKIEERFERRIWVSVSQKFDEEQIMRSILRNLGDASVGDDKGELSKKINEYLLGKRYLIVMDDVWSLDVTWWLRIYEALPKGNGSSVIITTRIEKVAQKMGVKEARSHWPKCLSKDDSWLLFRKIAFAENGGECMYPELENVGNEVVEKCK






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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