PRGDB00048650 (putative NBS-LRR disease resistance protein)

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putative NBS-LRR disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 108947351 (DQ644418)
Gene Class NL
Domain Type NBS, LRR
Gene Species Malus floribunda

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Malus floribunda clone ABGA005054CT putative NBS-LRR disease resistance protein gene, partial cds.

DNA Sequence

CCTTGCTAAGCTTGTTTATGATAGAATCTTCCATCATTTTGAAGTTCACTTCTTTCTTGGCAACATTAGAGAGGTTTCTAACGTTGATCTTCAAAAAAGACTTTTGCGCCCTATGTTGAAGGAAAAGATTGAAGAAATTTGGGATGAAGAGCGCGGAATCATTTTCATTAAAAAGTGCTTACGCAACAAAAAGGTTCTTCTTGTACTCGATGATGTGGATCACATAAACCAGCTACAAGTACTAGCTGGAAAGGAAGATTGGTTTGGCATGGAAAGTCGAATTATCATTACAACTAGAAATGAACGTCTGCTAGTCCAGCATGACGTAACATTATGTCATAATGTCAAAGTGTTGGATGAAGGCGCAGCTCTTGAACTGTTTAGCCTACATGCCTTTAAGAAAAATCTGCCTGAGGATGGGTTTTGGGAACTGTCAACATATTTCATGAATTATGCTGGA


Protein sequences

Name Description Sequence
putative NBS-LRR disease resistance protein putative NBS-LRR disease resistance protein [Malus floribunda].

LAKLVYDRIFHHFEVHFFLGNIREVSNVDLQKRLLRPMLKEKIEEIWDEERGIIFIKKCLRNKKVLLVLDDVDHINQLQVLAGKEDWFGMESRIIITTRNERLLVQHDVTLCHNVKVLDEGAALELFSLHAFKKNLPEDGFWELSTYFMNYAG


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017:SF20
1-153 PTHR11017:SF20,SUBFAMILY NOT NAMED

LAKLVYDRIFHHFEVHFFLGNIREVSNVDLQKRLLRPMLKEKIEEIWDEERGIIFIKKCLRNKKVLLVLDDVDHINQLQVLAGKEDWFGMESRIIITTRNERLLVQHDVTLCHNVKVLDEGAALELFSLHAFKKNLPEDGFWELSTYFMNYAG

HMMPanther: PTHR11017
1-153 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

LAKLVYDRIFHHFEVHFFLGNIREVSNVDLQKRLLRPMLKEKIEEIWDEERGIIFIKKCLRNKKVLLVLDDVDHINQLQVLAGKEDWFGMESRIIITTRNERLLVQHDVTLCHNVKVLDEGAALELFSLHAFKKNLPEDGFWELSTYFMNYAG

superfamily: SSF52540
1-137 SSF52540

LAKLVYDRIFHHFEVHFFLGNIREVSNVDLQKRLLRPMLKEKIEEIWDEERGIIFIKKCLRNKKVLLVLDDVDHINQLQVLAGKEDWFGMESRIIITTRNERLLVQHDVTLCHNVKVLDEGAALELFSLHAFKKNLP

HMMPfam: PF00931
IPR002182
7-136 NB-ARC,NBS
NB-ARC

DRIFHHFEVHFFLGNIREVSNVDLQKRLLRPMLKEKIEEIWDEERGIIFIKKCLRNKKVLLVLDDVDHINQLQVLAGKEDWFGMESRIIITTRNERLLVQHDVTLCHNVKVLDEGAALELFSLHAFKKNL






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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