PRGDB00048653 (putative NBS-LRR disease resistance protein)

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putative NBS-LRR disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 108947345 (DQ644415)
Gene Class NL
Domain Type NBS, LRR
Gene Species Malus floribunda

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Malus floribunda clone ABGA005043CT putative NBS-LRR disease resistance protein gene, partial cds.

DNA Sequence

TCTTGCTAAGCTAGTTTATGATAAAATCTTCCATCATTTTGAAGTTCACTGCTTTCTTGAAAACGTTAGAGAGGTTTCTGTAAGAAAGCGTACTCTAGTTCGTCTTCAAAAACAACTTCTTTCCCCAATCTTGAAAGAAAATATTGAAAACGTTAGTGACCAACAATGGGGAATCATTTACACGAAGAAATGCTTATGCAACAAAAAGGTTCTTCTTGTACTTGATGATGTGGATCAAATAAACCAGCTACAAGCACTAGCTGGAAAGGAAGATTGGTTTGGCATGGGAAGTAGAATTATTATTACAACTAGAAATGAACGTCTGCTGGTCTTGCATGACATAACATTATGTCATAATGTCAAGGTGTTAAAGGATGCCGAAGCACTAAAGCTCTTTAGCCTGCATGCCTTCAGAAAAGACCAACCTGAGAAAGATTTTTTGGAACTGTCCAAGTATTTCATTAATCATGCTGGA


Protein sequences

Name Description Sequence
putative NBS-LRR disease resistance protein putative NBS-LRR disease resistance protein [Malus floribunda].

LAKLVYDKIFHHFEVHCFLENVREVSVRKRTLVRLQKQLLSPILKENIENVSDQQWGIIYTKKCLCNKKVLLVLDDVDQINQLQALAGKEDWFGMGSRIIITTRNERLLVLHDITLCHNVKVLKDAEALKLFSLHAFRKDQPEKDFLELSKYFINHAG


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017:SF20
1-158 PTHR11017:SF20,SUBFAMILY NOT NAMED

LAKLVYDKIFHHFEVHCFLENVREVSVRKRTLVRLQKQLLSPILKENIENVSDQQWGIIYTKKCLCNKKVLLVLDDVDQINQLQALAGKEDWFGMGSRIIITTRNERLLVLHDITLCHNVKVLKDAEALKLFSLHAFRKDQPEKDFLELSKYFINHAG

superfamily: SSF52540
1-142 SSF52540

LAKLVYDKIFHHFEVHCFLENVREVSVRKRTLVRLQKQLLSPILKENIENVSDQQWGIIYTKKCLCNKKVLLVLDDVDQINQLQALAGKEDWFGMGSRIIITTRNERLLVLHDITLCHNVKVLKDAEALKLFSLHAFRKDQP

HMMPanther: PTHR11017
1-158 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

LAKLVYDKIFHHFEVHCFLENVREVSVRKRTLVRLQKQLLSPILKENIENVSDQQWGIIYTKKCLCNKKVLLVLDDVDQINQLQALAGKEDWFGMGSRIIITTRNERLLVLHDITLCHNVKVLKDAEALKLFSLHAFRKDQPEKDFLELSKYFINHAG

HMMPfam: PF00931
IPR002182
2-150 NB-ARC,NBS
NB-ARC

AKLVYDKIFHHFEVHCFLENVREVSVRKRTLVRLQKQLLSPILKENIENVSDQQWGIIYTKKCLCNKKVLLVLDDVDQINQLQALAGKEDWFGMGSRIIITTRNERLLVLHDITLCHNVKVLKDAEALKLFSLHAFRKDQPEKDFLELS






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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