PRGDB00048659 (putative NBS-LRR disease resistance protein)

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putative NBS-LRR disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 108947333 (DQ644409)
Gene Class NL
Domain Type NBS, LRR
Gene Species Malus floribunda

Comment?

Malus floribunda clone ABGA005016CT putative NBS-LRR disease resistance protein gene, partial cds.

DNA Sequence

CCTTGCCAAAGCATGTTATGAGAGGATTCGTCATAAATTTCAAGCCAAAAGCTTTCATGACGGAGTTAGAGAGGATTCTAAGGCACACGGTATGGCCAGTGTACAGAGGAAGCTTTCCAATAGCCTTATGAAAAAAAATATACAGGACTGGGATGCCGGTGAAGCTGCCAGTTGGAGAAGTTTCTTACTTGAGAAAAAGGTTCTCATCATTCTTGATGACGTGGATGATAGTAACCATTTAAGAGAGCTATGTGGAAAACCAAATTGGTTTCGTCAGGGGAGTAGAATCATTATTACGACTAGAGATGAACGCTTGCTAATTTCACATGGTGTAAAAAAAGTATTTGAGGTGCCGGAGCTGAGTAAAGTTGATGCTCTTAAACTTTTTAGCTTGAGAGCCTTCCGTAGAGAGAATCCGCCTGAAAGTTATAAGGCTCTGTCTGACAGTTTTGTGGACTATGCCAGT


Protein sequences

Name Description Sequence
putative NBS-LRR disease resistance protein putative NBS-LRR disease resistance protein [Malus floribunda].

LAKACYERIRHKFQAKSFHDGVREDSKAHGMASVQRKLSNSLMKKNIQDWDAGEAASWRSFLLEKKVLIILDDVDDSNHLRELCGKPNWFRQGSRIIITTRDERLLISHGVKKVFEVPELSKVDALKLFSLRAFRRENPPESYKALSDSFVDYAS


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017:SF20
1-155 PTHR11017:SF20,SUBFAMILY NOT NAMED

LAKACYERIRHKFQAKSFHDGVREDSKAHGMASVQRKLSNSLMKKNIQDWDAGEAASWRSFLLEKKVLIILDDVDDSNHLRELCGKPNWFRQGSRIIITTRDERLLISHGVKKVFEVPELSKVDALKLFSLRAFRRENPPESYKALSDSFVDYAS

HMMPanther: PTHR11017
1-155 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

LAKACYERIRHKFQAKSFHDGVREDSKAHGMASVQRKLSNSLMKKNIQDWDAGEAASWRSFLLEKKVLIILDDVDDSNHLRELCGKPNWFRQGSRIIITTRDERLLISHGVKKVFEVPELSKVDALKLFSLRAFRRENPPESYKALSDSFVDYAS

HMMPfam: PF00931
IPR002182
9-150 NB-ARC,NBS
NB-ARC

IRHKFQAKSFHDGVREDSKAHGMASVQRKLSNSLMKKNIQDWDAGEAASWRSFLLEKKVLIILDDVDDSNHLRELCGKPNWFRQGSRIIITTRDERLLISHGVKKVFEVPELSKVDALKLFSLRAFRRENPPESYKALSDSF

superfamily: SSF52540
61-139 SSF52540

FLLEKKVLIILDDVDDSNHLRELCGKPNWFRQGSRIIITTRDERLLISHGVKKVFEVPELSKVDALKLFSLRAFRRENP






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


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