PRGDB00048923 (putative NBS-LRR disease resistance protein)

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putative NBS-LRR disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 108946802 (DQ644145)
Gene Class NL
Domain Type NBS, LRR
Gene Species Malus x domestica

Comment?

Malus x domestica clone ABFA999011CT putative NBS-LRR disease resistance protein gene, partial cds.

DNA Sequence

CCTTGCCAAAGCATGTTATGAGAGGATTCGTCATAAATTTCAAGCCGAAAGCTTTCATGACGGAGTTAGAGAGGATTCTAAGGCACACGGTATGGCCTGTGTACAGAGGAAGCTTTCCAATAGCCTTACGAAAAGAAATATACAAGACTGGGCTGCCGGTGAAGCTGCCAGATGGAGAAGTTTCTTACTTGAGAAAAAGGTTCTCATCATTCTTGATGACGTGGACGATAGTATCCAGTTACGAGAGCTATGTGAAAAACCAGCTTGGTTTGGTCAGGGGAGTAGAATCATTATTACGACTAGAGATGAACGCTTGCTAATTTCACATGGTGTAGAAAGACGATTTAAGATGCCGGAGCTGAGTAAAGTTGATGCTCTTAAACTTTTTAACATGAGAGCCTTCCCTAGAGAGAATCCACCTGAAAGTTATAAGGCTCTGTCTGACAGTTTTGTGGACTATGCCAGT


Protein sequences

Name Description Sequence
putative NBS-LRR disease resistance protein putative NBS-LRR disease resistance protein [Malus x domestica].

LAKACYERIRHKFQAESFHDGVREDSKAHGMACVQRKLSNSLTKRNIQDWAAGEAARWRSFLLEKKVLIILDDVDDSIQLRELCEKPAWFGQGSRIIITTRDERLLISHGVERRFKMPELSKVDALKLFNMRAFPRENPPESYKALSDSFVDYAS


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017:SF20
1-155 PTHR11017:SF20,SUBFAMILY NOT NAMED

LAKACYERIRHKFQAESFHDGVREDSKAHGMACVQRKLSNSLTKRNIQDWAAGEAARWRSFLLEKKVLIILDDVDDSIQLRELCEKPAWFGQGSRIIITTRDERLLISHGVERRFKMPELSKVDALKLFNMRAFPRENPPESYKALSDSFVDYAS

HMMPanther: PTHR11017
1-155 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

LAKACYERIRHKFQAESFHDGVREDSKAHGMACVQRKLSNSLTKRNIQDWAAGEAARWRSFLLEKKVLIILDDVDDSIQLRELCEKPAWFGQGSRIIITTRDERLLISHGVERRFKMPELSKVDALKLFNMRAFPRENPPESYKALSDSFVDYAS

HMMPfam: PF00931
IPR002182
25-150 NB-ARC,NBS
NB-ARC

DSKAHGMACVQRKLSNSLTKRNIQDWAAGEAARWRSFLLEKKVLIILDDVDDSIQLRELCEKPAWFGQGSRIIITTRDERLLISHGVERRFKMPELSKVDALKLFNMRAFPRENPPESYKALSDSF

superfamily: SSF52540
61-139 SSF52540

FLLEKKVLIILDDVDDSIQLRELCEKPAWFGQGSRIIITTRDERLLISHGVERRFKMPELSKVDALKLFNMRAFPRENP






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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