PRGDB00048931 (putative NBS-LRR disease resistance protein)

putative NBS-LRR disease resistance protein
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	83571777 (DQ285630)
Gene Class	NL
Domain Type	NBS, LRR, Others
Gene Species	Oryza sativa Indica Group
	Comment?

Oryza sativa (indica cultivar-group) putative nitrate-induced NOI protein (75-1-127BAC12.1), putative NBS-LRR disease resistance protein (Nbs1-Pi9), putative NBS-LRR disease resistance protein (Nbs3-Pi9), and NBS-LRR disease resistance protein (Pi9) genes

DNA Sequence

ATGGCGGATACAGTACTCAGCATTGCAAAGTCCCTGGTGGGAAGTGCTGTAAGTAAGGTTGCTTCGGTTGCTGCCGACAAGATGATCTTGCTGCTGGGAGTGCAGAAGGAGATATGTTGCATTAGATTTTTTGGGACCACACTTATGCAGAGTGAAATTAAAGTTACCCTCAGATTCGATGTAGATCGGTCTGACCGGAGTAGTCTCGTCAGGTCTGACCGCGCCTGTGCCGCCGGTCTGACCGCAGTCACCTGCCGGTCTGACCGCCGTGATGCCGCCGGTCTGACCGCCGGTGCGCCGCCGGTTAGACCGCCGAAACCCGGTGAAACACAAATCGAAGAACTCTTAAAGTTCATCAAAGACGAGCTACAAACGATACAAGCATTTTTGATGGCTGCCGAAGCATCAAAGAAAAGCATACTGTTGAAGGTTTGGGTGCAGCAAGTAAGGGATCTATCCTATGACATTGAAGATTGCCTTGATGAATTTACAGTTCATGTGGGCAGCCAAACCTTGTCGAGGCAGTTGATGAAGCTAAAGGATCGCCATCGGATCGCCGTTCAGATCCGCAATCTCAGGACAAGAATCGAAGAAGTGAGCAGTAGGAACACACGCTACAACTTAATAGAGAATGACCTTACCAGCACCACTGGTGAGAGGAATTTCATTATGGAAGACATTCGAAATGAATCAGCTAACAATATCGAGGAAGCTGAGCTTGTGGGTTTTTCGGGACCCAAAAGAGAGTTGCTTGATCTTATAGATGTCCATGCCAAGGATGGACCTACAAAGGTTGTATGTGTTGTCGGTATGGGTGGTTTGGGTAAGACTACTATTGCAAGGAAAATTTATGAAAGCAAAGAGGACATTGCAAAGAATTTTTCTTGCTGTGCTTGGATTACTGTTTCACAGTCCTTTGTTAGGTTGGAACTACTCAAGGATTTGATGGTGAAACTTTTTGGAGAGGAAGTACTCAAGAAGCGGCTGAGAGAACTTGAAGGGAAGGTTCCACAAGTAGACGACCTCGCCAGCTACCTCAGGACAGAGTTAAATGAAAGGAGGTACTTTGTTGTGCTTGATGATGTGTGGAGTACAGATTCATGGAAATGGATTAATAGTATTGCCTTCCCTAGAAATAACAATAAAGGGAGCCGGGTGATAGTAACAACAAGAGATGTTGGCTTAGCTAAGGAGTGTACTTCTGAATTGCTTATCTACCGGCTTAAACCCCTAGAAATAACCTATGCGAAAGAGTTGCTTCTAAGGAAAGCAAATAAAAAAATTGAAGATATGAAAAGTGATAAAAAGATGAGTGACATCATTACTAAAATAGTAAAAAAGTGTGGCTATTTACCACTGGCTATACTCACAATAGGAGGCGTGCTTGCCACCAAAGATCCATCAAGAGCGGGTGTACGAGGAGAATTTAAGAGCTGTCGAATCCACGACATCATGCGTGATATTGCAATTTCGATTTCTAGAGAGGAAAATTTCATACTCTTACCTGAGGGCACTGACTATGACGTAGTGCATGGGAACACTCGGCACATAGCATTTCACGGGA

Protein sequences

Name	Description	Sequence
putative NBS-LRR disease resistance protein	putative NBS-LRR disease resistance protein [Oryza sativa (indica cultivar-group)].	MADTVLSIAKSLVGSAVSKVASVAADKMILLLGVQKEICCIRFFGTTLMQSEIKVTLRFDVDRSDRSSLVRSDRACAAGLTAVTCRSDRRDAAGLTAGAPPVRPPKPGETQIEELLKFIKDELQTIQAFLMAAEASKKSILLKVWVQQVRDLSYDIEDCLDEFTVHVGSQTLSRQLMKLKDRHRIAVQIRNLRTRIEEVSSRNTRYNLIENDLTSTTGERNFIMEDIRNESANNIEEAELVGFSGPKRELLDLIDVHAKDGPTKVVCVVGMGGLGKTTIARKIYESKEDIAKNFSCCAWITVSQSFVRLELLKDLMVKLFGEEVLKKRLRELEGKVPQVDDLASYLRTELNERRYFVVLDDVWSTDSWKWINSIAFPRNNNKGSRVIVTTRDVGLAKECTSELLIYRLKPLEITYAKELLLRKANKKIEDMKSDKKMSDIITKIVKKCGYLPLAILTIGGVLATKDPSRAGVRGEFKSCRIHDIMRDIAISISREENFILLPEGTDYDVVHGNTRHIAFHG

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR23155	118-452	PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	FIKDELQTIQAFLMAAEASKKSILLKVWVQQVRDLSYDIEDCLDEFTVHVGSQTLSRQLMKLKDRHRIAVQIRNLRTRIEEVSSRNTRYNLIENDLTSTTGERNFIMEDIRNESANNIEEAELVGFSGPKRELLDLIDVHAKDGPTKVVCVVGMGGLGKTTIARKIYESKEDIAKNFSCCAWITVSQSFVRLELLKDLMVKLFGEEVLKKRLRELEGKVPQVDDLASYLRTELNERRYFVVLDDVWSTDSWKWINSIAFPRNNNKGSRVIVTTRDVGLAKECTSELLIYRLKPLEITYAKELLLRKANKKIEDMKSDKKMSDIITKIVKKCGYLP
HMMPanther: PTHR23155:SF148	118-452	PTHR23155:SF148,OS06G0125000 PROTEIN	FIKDELQTIQAFLMAAEASKKSILLKVWVQQVRDLSYDIEDCLDEFTVHVGSQTLSRQLMKLKDRHRIAVQIRNLRTRIEEVSSRNTRYNLIENDLTSTTGERNFIMEDIRNESANNIEEAELVGFSGPKRELLDLIDVHAKDGPTKVVCVVGMGGLGKTTIARKIYESKEDIAKNFSCCAWITVSQSFVRLELLKDLMVKLFGEEVLKKRLRELEGKVPQVDDLASYLRTELNERRYFVVLDDVWSTDSWKWINSIAFPRNNNKGSRVIVTTRDVGLAKECTSELLIYRLKPLEITYAKELLLRKANKKIEDMKSDKKMSDIITKIVKKCGYLP
superfamily: SSF52540	222-464	SSF52540	FIMEDIRNESANNIEEAELVGFSGPKRELLDLIDVHAKDGPTKVVCVVGMGGLGKTTIARKIYESKEDIAKNFSCCAWITVSQSFVRLELLKDLMVKLFGEEVLKKRLRELEGKVPQVDDLASYLRTELNERRYFVVLDDVWSTDSWKWINSIAFPRNNNKGSRVIVTTRDVGLAKECTSELLIYRLKPLEITYAKELLLRKANKKIEDMKSDKKMSDIITKIVKKCGYLPLAILTIGGVLAT
Gene3D: G3DSA:3.40.50.300	247-392	G3DSA:3.40.50.300	KRELLDLIDVHAKDGPTKVVCVVGMGGLGKTTIARKIYESKEDIAKNFSCCAWITVSQSFVRLELLKDLMVKLFGEEVLKKRLRELEGKVPQVDDLASYLRTELNERRYFVVLDDVWSTDSWKWINSIAFPRNNNKGSRVIVTTRD
HMMPfam: PF00931 IPR002182	263-466	NB-ARC,NBS NB-ARC	TKVVCVVGMGGLGKTTIARKIYESKEDIAKNFSCCAWITVSQSFVRLELLKDLMVKLFGEEVLKKRLRELEGKVPQVDDLASYLRTELNERRYFVVLDDVWSTDSWKWINSIAFPRNNNKGSRVIVTTRDVGLAKECTSELLIYRLKPLEITYAKELLLRKANKKIEDMKSDKKMSDIITKIVKKCGYLPLAILTIGGVLATKD
FPrintScan: PR00364 IPR000767	265-280	DISEASERSIST Disease resistance protein	VVCVVGMGGLGKTTIA
FPrintScan: PR00364 IPR000767	349-363	DISEASERSIST Disease resistance protein	ELNERRYFVVLDDVW
FPrintScan: PR00364 IPR000767	448-462	DISEASERSIST Disease resistance protein	CGYLPLAILTIGGVL

List of References

Shaohong Qu, Guifu Liu, Bo Zhou, Maria Bellizzi, Lirong Zeng, Liangying Dai, Bin Han, Guo-Liang Wang
The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice.
Genetics: 2006, 172(3);1901-14
PubMed:16387888 WorldCat.org DOI (P p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show