PRGDB00048931 (putative NBS-LRR disease resistance protein)
putative NBS-LRR disease resistance protein | |
---|---|
Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
GenBank | 83571777 (DQ285630) |
Gene Class | NL |
Domain Type | NBS, LRR, Others |
Gene Species | Oryza sativa Indica Group |
DNA Sequence
ATGGCGGATACAGTACTCAGCATTGCAAAGTCCCTGGTGGGAAGTGCTGTAAGTAAGGTTGCTTCGGTTGCTGCCGACAAGATGATCTTGCTGCTGGGAGTGCAGAAGGAGATATGTTGCATTAGATTTTTTGGGACCACACTTATGCAGAGTGAAATTAAAGTTACCCTCAGATTCGATGTAGATCGGTCTGACCGGAGTAGTCTCGTCAGGTCTGACCGCGCCTGTGCCGCCGGTCTGACCGCAGTCACCTGCCGGTCTGACCGCCGTGATGCCGCCGGTCTGACCGCCGGTGCGCCGCCGGTTAGACCGCCGAAACCCGGTGAAACACAAATCGAAGAACTCTTAAAGTTCATCAAAGACGAGCTACAAACGATACAAGCATTTTTGATGGCTGCCGAAGCATCAAAGAAAAGCATACTGTTGAAGGTTTGGGTGCAGCAAGTAAGGGATCTATCCTATGACATTGAAGATTGCCTTGATGAATTTACAGTTCATGTGGGCAGCCAAACCTTGTCGAGGCAGTTGATGAAGCTAAAGGATCGCCATCGGATCGCCGTTCAGATCCGCAATCTCAGGACAAGAATCGAAGAAGTGAGCAGTAGGAACACACGCTACAACTTAATAGAGAATGACCTTACCAGCACCACTGGTGAGAGGAATTTCATTATGGAAGACATTCGAAATGAATCAGCTAACAATATCGAGGAAGCTGAGCTTGTGGGTTTTTCGGGACCCAAAAGAGAGTTGCTTGATCTTATAGATGTCCATGCCAAGGATGGACCTACAAAGGTTGTATGTGTTGTCGGTATGGGTGGTTTGGGTAAGACTACTATTGCAAGGAAAATTTATGAAAGCAAAGAGGACATTGCAAAGAATTTTTCTTGCTGTGCTTGGATTACTGTTTCACAGTCCTTTGTTAGGTTGGAACTACTCAAGGATTTGATGGTGAAACTTTTTGGAGAGGAAGTACTCAAGAAGCGGCTGAGAGAACTTGAAGGGAAGGTTCCACAAGTAGACGACCTCGCCAGCTACCTCAGGACAGAGTTAAATGAAAGGAGGTACTTTGTTGTGCTTGATGATGTGTGGAGTACAGATTCATGGAAATGGATTAATAGTATTGCCTTCCCTAGAAATAACAATAAAGGGAGCCGGGTGATAGTAACAACAAGAGATGTTGGCTTAGCTAAGGAGTGTACTTCTGAATTGCTTATCTACCGGCTTAAACCCCTAGAAATAACCTATGCGAAAGAGTTGCTTCTAAGGAAAGCAAATAAAAAAATTGAAGATATGAAAAGTGATAAAAAGATGAGTGACATCATTACTAAAATAGTAAAAAAGTGTGGCTATTTACCACTGGCTATACTCACAATAGGAGGCGTGCTTGCCACCAAAGATCCATCAAGAGCGGGTGTACGAGGAGAATTTAAGAGCTGTCGAATCCACGACATCATGCGTGATATTGCAATTTCGATTTCTAGAGAGGAAAATTTCATACTCTTACCTGAGGGCACTGACTATGACGTAGTGCATGGGAACACTCGGCACATAGCATTTCACGGGA
Protein sequences
Name | Description | Sequence |
---|---|---|
putative NBS-LRR disease resistance protein | putative NBS-LRR disease resistance protein [Oryza sativa (indica cultivar-group)]. | MADTVLSIAKSLVGSAVSKVASVAADKMILLLGVQKEICCIRFFGTTLMQSEIKVTLRFDVDRSDRSSLVRSDRACAAGLTAVTCRSDRRDAAGLTAGAPPVRPPKPGETQIEELLKFIKDELQTIQAFLMAAEASKKSILLKVWVQQVRDLSYDIEDCLDEFTVHVGSQTLSRQLMKLKDRHRIAVQIRNLRTRIEEVSSRNTRYNLIENDLTSTTGERNFIMEDIRNESANNIEEAELVGFSGPKRELLDLIDVHAKDGPTKVVCVVGMGGLGKTTIARKIYESKEDIAKNFSCCAWITVSQSFVRLELLKDLMVKLFGEEVLKKRLRELEGKVPQVDDLASYLRTELNERRYFVVLDDVWSTDSWKWINSIAFPRNNNKGSRVIVTTRDVGLAKECTSELLIYRLKPLEITYAKELLLRKANKKIEDMKSDKKMSDIITKIVKKCGYLPLAILTIGGVLATKDPSRAGVRGEFKSCRIHDIMRDIAISISREENFILLPEGTDYDVVHGNTRHIAFHG |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
HMMPanther: PTHR23155 | 118-452 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | FIKDELQTIQAFLMAAEASKKSILLKVWVQQVRDLSYDIEDCLDEFTVHVGSQTLSRQLMKLKDRHRIAVQIRNLRTRIEEVSSRNTRYNLIENDLTSTTGERNFIMEDIRNESANNIEEAELVGFSGPKRELLDLIDVHAKDGPTKVVCVVGMGGLGKTTIARKIYESKEDIAKNFSCCAWITVSQSFVRLELLKDLMVKLFGEEVLKKRLRELEGKVPQVDDLASYLRTELNERRYFVVLDDVWSTDSWKWINSIAFPRNNNKGSRVIVTTRDVGLAKECTSELLIYRLKPLEITYAKELLLRKANKKIEDMKSDKKMSDIITKIVKKCGYLP |
HMMPanther: PTHR23155:SF148 | 118-452 | PTHR23155:SF148,OS06G0125000 PROTEIN | FIKDELQTIQAFLMAAEASKKSILLKVWVQQVRDLSYDIEDCLDEFTVHVGSQTLSRQLMKLKDRHRIAVQIRNLRTRIEEVSSRNTRYNLIENDLTSTTGERNFIMEDIRNESANNIEEAELVGFSGPKRELLDLIDVHAKDGPTKVVCVVGMGGLGKTTIARKIYESKEDIAKNFSCCAWITVSQSFVRLELLKDLMVKLFGEEVLKKRLRELEGKVPQVDDLASYLRTELNERRYFVVLDDVWSTDSWKWINSIAFPRNNNKGSRVIVTTRDVGLAKECTSELLIYRLKPLEITYAKELLLRKANKKIEDMKSDKKMSDIITKIVKKCGYLP |
superfamily: SSF52540 | 222-464 | SSF52540 | FIMEDIRNESANNIEEAELVGFSGPKRELLDLIDVHAKDGPTKVVCVVGMGGLGKTTIARKIYESKEDIAKNFSCCAWITVSQSFVRLELLKDLMVKLFGEEVLKKRLRELEGKVPQVDDLASYLRTELNERRYFVVLDDVWSTDSWKWINSIAFPRNNNKGSRVIVTTRDVGLAKECTSELLIYRLKPLEITYAKELLLRKANKKIEDMKSDKKMSDIITKIVKKCGYLPLAILTIGGVLAT |
Gene3D: G3DSA:3.40.50.300 | 247-392 | G3DSA:3.40.50.300 | KRELLDLIDVHAKDGPTKVVCVVGMGGLGKTTIARKIYESKEDIAKNFSCCAWITVSQSFVRLELLKDLMVKLFGEEVLKKRLRELEGKVPQVDDLASYLRTELNERRYFVVLDDVWSTDSWKWINSIAFPRNNNKGSRVIVTTRD |
HMMPfam: PF00931 IPR002182
|
263-466 | NB-ARC,NBS NB-ARC
|
TKVVCVVGMGGLGKTTIARKIYESKEDIAKNFSCCAWITVSQSFVRLELLKDLMVKLFGEEVLKKRLRELEGKVPQVDDLASYLRTELNERRYFVVLDDVWSTDSWKWINSIAFPRNNNKGSRVIVTTRDVGLAKECTSELLIYRLKPLEITYAKELLLRKANKKIEDMKSDKKMSDIITKIVKKCGYLPLAILTIGGVLATKD |
FPrintScan: PR00364 IPR000767
|
265-280 | DISEASERSIST Disease resistance protein
|
VVCVVGMGGLGKTTIA |
FPrintScan: PR00364 IPR000767
|
349-363 | DISEASERSIST Disease resistance protein
|
ELNERRYFVVLDDVW |
FPrintScan: PR00364 IPR000767
|
448-462 | DISEASERSIST Disease resistance protein
|
CGYLPLAILTIGGVL |
List of References
Shaohong Qu, Guifu Liu, Bo Zhou, Maria Bellizzi, Lirong Zeng, Liangying Dai, Bin Han, Guo-Liang Wang
The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice.
Genetics: 2006, 172(3);1901-14
PubMed:16387888
WorldCat.org
DOI
(P p)
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