PRGDB00048934 (putative NBS-LRR disease resistance protein)

putative NBS-LRR disease resistance protein
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	83571777 (DQ285630)
Gene Class	NL
Domain Type	NBS, LRR, Others
Gene Species	Oryza sativa Indica Group
	Comment?

Oryza sativa (indica cultivar-group) putative nitrate-induced NOI protein (75-1-127BAC12.1), putative NBS-LRR disease resistance protein (Nbs1-Pi9), putative NBS-LRR disease resistance protein (Nbs3-Pi9), and NBS-LRR disease resistance protein (Pi9) genes

DNA Sequence

ATGGCGATGTCGGTGCTGGGCAGCGCCGTCGGGAAGGCCGCCTCCGCCGCCGCCGACGAGGCCACCCTCCTGCTCGGCGTCCAGAAGGAGATCTGGTACATCAAGGACGAGCTGAAAACTATTCAGGCATTCTTAAGAGCTGCTGAAGTAACAAAGAAGAAAGATGACTTGCTAAAGGTATGGGCAGAGCAAGTACGAGATCTGTCATATAACATTGAAGATTGCCTAGACGAATTCAAGGTTCATGTTGAGAGCCAAAGCTTGGCAAAGCAACTAATGAAGCTTGGTGAACGCCATCGAATTGCTGTACAGATTCTCAACTTAAAATCAAGAATTGAAGAAGTGAGCAACAGGAATACACGCTACAGCTTAATCAAGCTCATTTCCTCTATAACCACAGAGGATGAGAGGGATTCCTACCTAGAAGATGCTCGCAATCGATCAGGTAGCAACACTGACGAGTCAGAACTTGTGGGCTTTGCCAAGACTAAAGATGAGTTGCTTAAACTGATAGATGTCAATACTAATGACGGTCCAGCTAAAGTGATATGTGTGGTTGGAATGGGTGGATTAGGCAAGACTACCCTTGCAAGGAAGGCATATGAAAACAAGGAACACATGAAGAACTTCTCGTGTTGTGCTTGGATCACTGTGTCTCAGTCATTTGACAGGAAAGAAATTCTGAAACAAATGATCAGGCAACTTCTGGGTGCTGATTCATTAGACAAACTCTTGAAAGAATTTAGTGAGAAGTTGCTCGTGCAAGTCCAGCATCTCGCTGATCACTTGGTTGAAGGGCTAAAGGAGAAAAGGTACTTTGTTGTCCTTGATGACCTATGGACCATAGATGCATGGAATTGGATTCATGATACTGCTTTTCCGAAGATTAACAACAGAGGTAGTCGCATAATAATAACAACGCGAGATGCTGGCTTAGCTGGAAGGTGTACCTCTGAATCACTTATTTACCACCTTGAACCGTTACATATAGATGATGCTATACACTTGCTACTAGCAAAGACAAACATAAGACTTGAAGACATGGAAAATGATGAGGACTTGGGCAGCATAGTTACAAAATTGGTAAAAAGGTGTGGTTATTTACCGCTGGCTATACTCACAATAGGAGGCATTCTTGCTACTAAGAAGATAATGGAATGGGGAAAATTTTACAGAGAACTTCCTTCAGAGCTTGAGAGCAATCCAAGCCTAGAAGCCATGAGGAGGATGGTGACCCTAAGCTACAATCACTTACCATCTCATCTTAAACCATGCTTTCTTTACCTAAGTATTTTCCCTGAAGATTTTGAAATTCAAAGAGGGCGCCTGGTAGATAGATGGATAGCAGAGGGTTTTGTCAGAGCCACAGATGGGGTGAACATTGAGGATGTTGGAAATAGTCACTTTAATGAGCTTATCAACAGAAGTCTGATTCAGCCCTCAAAAGTTAGTACAGATGGAGTTGTTAAGAGATGTCGAATCCATGATATCATGCGTGATATCATAGTTTCAATTTCTAGAGAGGAAAATTTTGTGCTGTTGACTAGGGAGAAGATCACTGTTGTAGCGGAGGAGAGCATCCGCCATCTAGCATTTCATGGGAGCAAATGCTCAAAGATATGCTTGGAGTGGAACCATCTGCGCTCAGTAACTTTGTTTGGTGACAGACCTGCGGGGCGAACACCTGCACTTTGTTCACCACAATTTAGGATGCTGAGAGTGTTGGATCTGGAAGATGCAAAATTCAAATTCACACAAAATGATATCAGGAATATAGGGTTGTTGCGCCACATGAAATATTTGAATTTTGCAAGAGCCTCAACTATTTATACACTTCCAAGGTCCATAGGAAAATTGCAGTGCTTGCAAATTTTGAACATGAGGGAGGCAAATATCTCAGCACTAACAACTGAGGTGACTAAACTCCAGAATCTCCGTAGCCTCCGATGCAGCAGGAGGTCAGGTTCTGGTTACTTTAGCATAATAGATAATCCCAAGGAATGCTTGATGATCACCATGTGCTTACCGATGGTTTTCTCAACTTCAATAAATTTCAGTGACCGTGTGAAGTTAATTCCTGAGATATGCATGTCATGTTCTACCCGTTGGTCTGATACAAAGGGTGTGAGGGTGCCAAGAGGAATTGACAACCTAAAAGAGTTACAGATTCTAGAAGTCGTGGACATCAACAGAACTAGTAGGAAGGCGATTGAAGAGCTGGGGGAGCTAATTCAGTTAAGAAAATTAAGCGTGACAACAAAAGGCGCCACAAATAAGAAGTATCAGATATTTTGTGCAGCGATTGAGAAGCTCTCTTCTCTGCAATCTCTCCGTGTGGATGCTGAGGGATTCTCAGATACTGGAACACTTGAGTGGCTCAATTCGATTGCATGTCCTCCTCCATTCTTGAAGACACTCAAGTTGAATGGATCTCTTGCAGATACACCAAACTGGTTTGGGAACCTTAAGCAGCTGGTGAAGATGTGCTTATCCAGATGTGTGCTACAAGATGGTAAAACTATGGAGATACTTGGGGCACTGCCCAACCTTATGGTTCTTCGTCTTTATCGCAACGCATATGCTGACGAGAAAATGGCATTCAGAAGGGGAACATTCCCAAATCTCAGGTGTCTTGATATTTACTTGCTGAAGCAACTTAGAGAGATAAGATTTGAGGAGGGCACCTCGCCAACAATGGAAAGTATAGAAATTTATGGTTGCAGGTTGGAATCAGGGATTATTGGTATCAAGCACCTTCCAAGACTTAAGATTATTTCGCTTGAATATGATGGTAAAGTCGCGAAGCTTGATGTGCTGCAAGAGGAAGTGAATACACACCCCAATCATACTGAACTGCAAATGGCAGAGGATCGAAGTCATCATGACCTAGGAGATTGTGACCATACATTTTCTTTTACTACATCTTTGCACCCCAAAGCGAAGATACTTTGCCGCCTGCTGATGCTATCTCTAATATCGAATTCTATGCGGATTCCCGTGCAAATAGCACCTCCACGTGGCGCGGCCAGATTCACGGATTCGCTCCCACGCACAGCCGTCCGATTGCATTTCAACGCCTCTCTATCCCCTGCGCCTCCACATGTCGCGGCTACGCGGGCATCTCGTTGGATCTATCATCGGCGGCGAGGAGGCGTGGCGATGGTGCCGAGGTTCATCGGCCGGTGGAGGAACATCGTCGACTTGAGGACCGTGCCCAGGTTCCGCATGGTCCCCAACTACTGCCACCCCGTGGGAGCCGCCGAGGGGGGCAACAACTATGGCTTTCAGATGATAGTTTGA

Protein sequences

Name	Description	Sequence
putative NBS-LRR disease resistance protein	putative NBS-LRR disease resistance protein [Oryza sativa (indica cultivar-group)].	MAMSVLGSAVGKAASAAADEATLLLGVQKEIWYIKDELKTIQAFLRAAEVTKKKDDLLKVWAEQVRDLSYNIEDCLDEFKVHVESQSLAKQLMKLGERHRIAVQILNLKSRIEEVSNRNTRYSLIKLISSITTEDERDSYLEDARNRSGSNTDESELVGFAKTKDELLKLIDVNTNDGPAKVICVVGMGGLGKTTLARKAYENKEHMKNFSCCAWITVSQSFDRKEILKQMIRQLLGADSLDKLLKEFSEKLLVQVQHLADHLVEGLKEKRYFVVLDDLWTIDAWNWIHDTAFPKINNRGSRIIITTRDAGLAGRCTSESLIYHLEPLHIDDAIHLLLAKTNIRLEDMENDEDLGSIVTKLVKRCGYLPLAILTIGGILATKKIMEWGKFYRELPSELESNPSLEAMRRMVTLSYNHLPSHLKPCFLYLSIFPEDFEIQRGRLVDRWIAEGFVRATDGVNIEDVGNSHFNELINRSLIQPSKVSTDGVVKRCRIHDIMRDIIVSISREENFVLLTREKITVVAEESIRHLAFHGSKCSKICLEWNHLRSVTLFGDRPAGRTPALCSPQFRMLRVLDLEDAKFKFTQNDIRNIGLLRHMKYLNFARASTIYTLPRSIGKLQCLQILNMREANISALTTEVTKLQNLRSLRCSRRSGSGYFSIIDNPKECLMITMCLPMVFSTSINFSDRVKLIPEICMSCSTRWSDTKGVRVPRGIDNLKELQILEVVDINRTSRKAIEELGELIQLRKLSVTTKGATNKKYQIFCAAIEKLSSLQSLRVDAEGFSDTGTLEWLNSIACPPPFLKTLKLNGSLADTPNWFGNLKQLVKMCLSRCVLQDGKTMEILGALPNLMVLRLYRNAYADEKMAFRRGTFPNLRCLDIYLLKQLREIRFEEGTSPTMESIEIYGCRLESGIIGIKHLPRLKIISLEYDGKVAKLDVLQEEVNTHPNHTELQMAEDRSHHDLGDCDHTFSFTTSLHPKAKILCRLLMLSLISNSMRIPVQIAPPRGAARFTDSLPRTAVRLHFNASLSPAPPHVAATRASRWIYHRRRGGVAMVPRFIGRWRNIVDLRTVPRFRMVPNYCHPVGAAEGGNNYGFQMIV

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR11017	8-964	PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	SAVGKAASAAADEATLLLGVQKEIWYIKDELKTIQAFLRAAEVTKKKDDLLKVWAEQVRDLSYNIEDCLDEFKVHVESQSLAKQLMKLGERHRIAVQILNLKSRIEEVSNRNTRYSLIKLISSITTEDERDSYLEDARNRSGSNTDESELVGFAKTKDELLKLIDVNTNDGPAKVICVVGMGGLGKTTLARKAYENKEHMKNFSCCAWITVSQSFDRKEILKQMIRQLLGADSLDKLLKEFSEKLLVQVQHLADHLVEGLKEKRYFVVLDDLWTIDAWNWIHDTAFPKINNRGSRIIITTRDAGLAGRCTSESLIYHLEPLHIDDAIHLLLAKTNIRLEDMENDEDLGSIVTKLVKRCGYLPLAILTIGGILATKKIMEWGKFYRELPSELESNPSLEAMRRMVTLSYNHLPSHLKPCFLYLSIFPEDFEIQRGRLVDRWIAEGFVRATDGVNIEDVGNSHFNELINRSLIQPSKVSTDGVVKRCRIHDIMRDIIVSISREENFVLLTREKITVVAEESIRHLAFHGSKCSKICLEWNHLRSVTLFGDRPAGRTPALCSPQFRMLRVLDLEDAKFKFTQNDIRNIGLLRHMKYLNFARASTIYTLPRSIGKLQCLQILNMREANISALTTEVTKLQNLRSLRCSRRSGSGYFSIIDNPKECLMITMCLPMVFSTSINFSDRVKLIPEICMSCSTRWSDTKGVRVPRGIDNLKELQILEVVDINRTSRKAIEELGELIQLRKLSVTTKGATNKKYQIFCAAIEKLSSLQSLRVDAEGFSDTGTLEWLNSIACPPPFLKTLKLNGSLADTPNWFGNLKQLVKMCLSRCVLQDGKTMEILGALPNLMVLRLYRNAYADEKMAFRRGTFPNLRCLDIYLLKQLREIRFEEGTSPTMESIEIYGCRLESGIIGIKHLPRLKIISLEYDGKVAKLDVLQEEVNTHPNHTELQMAEDRSHHDLG
HMMPanther: PTHR11017:SF129	8-964	PTHR11017:SF129	SAVGKAASAAADEATLLLGVQKEIWYIKDELKTIQAFLRAAEVTKKKDDLLKVWAEQVRDLSYNIEDCLDEFKVHVESQSLAKQLMKLGERHRIAVQILNLKSRIEEVSNRNTRYSLIKLISSITTEDERDSYLEDARNRSGSNTDESELVGFAKTKDELLKLIDVNTNDGPAKVICVVGMGGLGKTTLARKAYENKEHMKNFSCCAWITVSQSFDRKEILKQMIRQLLGADSLDKLLKEFSEKLLVQVQHLADHLVEGLKEKRYFVVLDDLWTIDAWNWIHDTAFPKINNRGSRIIITTRDAGLAGRCTSESLIYHLEPLHIDDAIHLLLAKTNIRLEDMENDEDLGSIVTKLVKRCGYLPLAILTIGGILATKKIMEWGKFYRELPSELESNPSLEAMRRMVTLSYNHLPSHLKPCFLYLSIFPEDFEIQRGRLVDRWIAEGFVRATDGVNIEDVGNSHFNELINRSLIQPSKVSTDGVVKRCRIHDIMRDIIVSISREENFVLLTREKITVVAEESIRHLAFHGSKCSKICLEWNHLRSVTLFGDRPAGRTPALCSPQFRMLRVLDLEDAKFKFTQNDIRNIGLLRHMKYLNFARASTIYTLPRSIGKLQCLQILNMREANISALTTEVTKLQNLRSLRCSRRSGSGYFSIIDNPKECLMITMCLPMVFSTSINFSDRVKLIPEICMSCSTRWSDTKGVRVPRGIDNLKELQILEVVDINRTSRKAIEELGELIQLRKLSVTTKGATNKKYQIFCAAIEKLSSLQSLRVDAEGFSDTGTLEWLNSIACPPPFLKTLKLNGSLADTPNWFGNLKQLVKMCLSRCVLQDGKTMEILGALPNLMVLRLYRNAYADEKMAFRRGTFPNLRCLDIYLLKQLREIRFEEGTSPTMESIEIYGCRLESGIIGIKHLPRLKIISLEYDGKVAKLDVLQEEVNTHPNHTELQMAEDRSHHDLG
superfamily: SSF52540	140-401	SSF52540	YLEDARNRSGSNTDESELVGFAKTKDELLKLIDVNTNDGPAKVICVVGMGGLGKTTLARKAYENKEHMKNFSCCAWITVSQSFDRKEILKQMIRQLLGADSLDKLLKEFSEKLLVQVQHLADHLVEGLKEKRYFVVLDDLWTIDAWNWIHDTAFPKINNRGSRIIITTRDAGLAGRCTSESLIYHLEPLHIDDAIHLLLAKTNIRLEDMENDEDLGSIVTKLVKRCGYLPLAILTIGGILATKKIMEWGKFYRELPSELESN
Gene3D: G3DSA:3.40.50.300	151-312	G3DSA:3.40.50.300	NTDESELVGFAKTKDELLKLIDVNTNDGPAKVICVVGMGGLGKTTLARKAYENKEHMKNFSCCAWITVSQSFDRKEILKQMIRQLLGADSLDKLLKEFSEKLLVQVQHLADHLVEGLKEKRYFVVLDDLWTIDAWNWIHDTAFPKINNRGSRIIITTRDAGL
HMMPfam: PF00931 IPR002182	178-457	NB-ARC,NBS NB-ARC	GPAKVICVVGMGGLGKTTLARKAYENKEHMKNFSCCAWITVSQSFDRKEILKQMIRQLLGADSLDKLLKEFSEKLLVQVQHLADHLVEGLKEKRYFVVLDDLWTIDAWNWIHDTAFPKINNRGSRIIITTRDAGLAGRCTSESLIYHLEPLHIDDAIHLLLAKTNIRLEDMENDEDLGSIVTKLVKRCGYLPLAILTIGGILATKKIMEWGKFYRELPSELESNPSLEAMRRMVTLSYNHLPSHLKPCFLYLSIFPEDFEIQRGRLVDRWIAEGFVRATD
FPrintScan: PR00364 IPR000767	182-197	DISEASERSIST Disease resistance protein	VICVVGMGGLGKTTLA
FPrintScan: PR00364 IPR000767	266-280	DISEASERSIST Disease resistance protein	GLKEKRYFVVLDDLW
FPrintScan: PR00364 IPR000767	365-379	DISEASERSIST Disease resistance protein	CGYLPLAILTIGGIL
superfamily: SSF52058	493-929	SSF52058,LRR	RIHDIMRDIIVSISREENFVLLTREKITVVAEESIRHLAFHGSKCSKICLEWNHLRSVTLFGDRPAGRTPALCSPQFRMLRVLDLEDAKFKFTQNDIRNIGLLRHMKYLNFARASTIYTLPRSIGKLQCLQILNMREANISALTTEVTKLQNLRSLRCSRRSGSGYFSIIDNPKECLMITMCLPMVFSTSINFSDRVKLIPEICMSCSTRWSDTKGVRVPRGIDNLKELQILEVVDINRTSRKAIEELGELIQLRKLSVTTKGATNKKYQIFCAAIEKLSSLQSLRVDAEGFSDTGTLEWLNSIACPPPFLKTLKLNGSLADTPNWFGNLKQLVKMCLSRCVLQDGKTMEILGALPNLMVLRLYRNAYADEKMAFRRGTFPNLRCLDIYLLKQLREIRFEEGTSPTMESIEIYGCRLESGIIGIKHLPRLKIISLEY
Gene3D: G3DSA:3.80.10.10	545-655	G3DSA:3.80.10.10	NHLRSVTLFGDRPAGRTPALCSPQFRMLRVLDLEDAKFKFTQNDIRNIGLLRHMKYLNFARASTIYTLPRSIGKLQCLQILNMREANISALTTEVTKLQNLRSLRCSRRSG
Gene3D: G3DSA:3.80.10.10	705-772	G3DSA:3.80.10.10	DTKGVRVPRGIDNLKELQILEVVDINRTSRKAIEELGELIQLRKLSVTTKGATNKKYQIFCAAIEKLS
FPrintScan: PR00364 IPR000767	719-735	DISEASERSIST Disease resistance protein	KELQILEVVDINRTSRK
Gene3D: G3DSA:3.80.10.10	773-928	G3DSA:3.80.10.10	SLQSLRVDAEGFSDTGTLEWLNSIACPPPFLKTLKLNGSLADTPNWFGNLKQLVKMCLSRCVLQDGKTMEILGALPNLMVLRLYRNAYADEKMAFRRGTFPNLRCLDIYLLKQLREIRFEEGTSPTMESIEIYGCRLESGIIGIKHLPRLKIISLE

List of References

Shaohong Qu, Guifu Liu, Bo Zhou, Maria Bellizzi, Lirong Zeng, Liangying Dai, Bin Han, Guo-Liang Wang
The broad-spectrum blast resistance gene Pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice.
Genetics: 2006, 172(3);1901-14
PubMed:16387888 WorldCat.org DOI (P p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show