PRGDB00048956 (Pto)

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Pto
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 70913156 (DQ019205)
Gene Class Unknown
Domain Type Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase
Gene Species Solanum peruvianum

Comment?

Lycopersicon peruvianum clone peru605 Pto disease resistance protein (Pto) gene, partial cds.

DNA Sequence

ACAAATTCCATAAATGATGCTTTAAGCTCGAGTTATCTCGTTCCTTTTGAAAGTTATCGAGTTCCTTTAGTAGATTTGGAGGAAGCAACTAATAATTTTGATCACAAGTTTTTAATTGGACATGGTGTCTTTGGGAAGGTTTACAAGGGTGTTTTGCGTGATGGAGCAAAGGTGGCTCTGAAAAGGCGTCAACCTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGACTCTCTCATTTTGCAGACATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATAAATACATGGAGAATGGGAACCTCAAGAGATATTTGTATGGATCAGATCTACCCACAATGAGCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTACACTTCCTTCATACTAGAGCAGTTATACATCGTGATGTCAAGTCTATAAACATATTGCTTGATGAGAATTTTGTGGCAAAAATTACTGATTTTGGAATATCCAAGAAAGGGACTGAGCTTGATCAAACCCATCTTAGCACAGTAGTGAAAGGAACTTTCGGCTACCTTGACCCTGAATATTTTATAAAGGGACGACTCACTGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTAGAAGTTCTTTGTGCTAGGTCTGCCATAGTTCAATCTCTTCCAAGGGAGATGGTTAATTTAGCTGAATGGGCAGTGGAGTCGCATAATAATGGACAGTTGGAACAAATCGTAGATCCCAATATTGCAGATAAAATAAGACCAGAGTCCCTCAGGAAGTTTGGAGAAACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCA


Protein sequences

Name Description Sequence
Pto disease resistance protein Pto disease resistance protein [Lycopersicon peruvianum].

TNSINDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRQPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRYLYGSDLPTMSMSWEQRLEICIGAARGLHFLHTRAVIHRDVKSINILLDENFVAKITDFGISKKGTELDQTHLSTVVKGTFGYLDPEYFIKGRLTEKSDVYSFGVVLLEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNIADKIRPESLRKFGETAVKCLALSSEDRPSMGDVLWKLEYA

Domains

Domain Start-End Description Sequence

superfamily: SSF56112
IPR011009
5-302 Kinase_like
Protein kinase-like domain

NDALSSSYLVPFESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRQPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRYLYGSDLPTMSMSWEQRLEICIGAARGLHFLHTRAVIHRDVKSINILLDENFVAKITDFGISKKGTELDQTHLSTVVKGTFGYLDPEYFIKGRLTEKSDVYSFGVVLLEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNIADKIRPESLRKFGETAVKCLALSSEDRPSMGDVLWKL

HMMPanther: PTHR24420
17-305 PTHR24420,FAMILY NOT NAMED

ESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRQPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRYLYGSDLPTMSMSWEQRLEICIGAARGLHFLHTRAVIHRDVKSINILLDENFVAKITDFGISKKGTELDQTHLSTVVKGTFGYLDPEYFIKGRLTEKSDVYSFGVVLLEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNIADKIRPESLRKFGETAVKCLALSSEDRPSMGDVLWKLEYA

HMMPanther: PTHR24420:SF785
17-305 PTHR24420:SF785

ESYRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRQPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRYLYGSDLPTMSMSWEQRLEICIGAARGLHFLHTRAVIHRDVKSINILLDENFVAKITDFGISKKGTELDQTHLSTVVKGTFGYLDPEYFIKGRLTEKSDVYSFGVVLLEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNIADKIRPESLRKFGETAVKCLALSSEDRPSMGDVLWKLEYA

Gene3D: G3DSA:3.30.200.20
21-109 G3DSA:3.30.200.20

VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRQPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYM

ProfileScan: PS50011
IPR000719
33-305 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

FDHKFLIGHGVFGKVYKGVLRDGAKVALKRRQPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRYLYGSDLPTMSMSWEQRLEICIGAARGLHFLHTRAVIHRDVKSINILLDENFVAKITDFGISKKGTELDQTHLSTVVKGTFGYLDPEYFIKGRLTEKSDVYSFGVVLLEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNIADKIRPESLRKFGETAVKCLALSSEDRPSMGDVLWKLEYA

HMMPfam: PF07714
IPR001245
38-299 Pkinase_Tyr
Serine-threonine/tyrosine-protein kinase catalytic

LIGHGVFGKVYKGVLRDGAKVALKRRQPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRYLYGSDLPTMSMSWEQRLEICIGAARGLHFLHTRAVIHRDVKSINILLDENFVAKITDFGISKKGTELDQTHLSTVVKGTFGYLDPEYFIKGRLTEKSDVYSFGVVLLEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNIADKIRPESLRKFGETAVKCLALSSEDRPSMGDVL

PatternScan: PS00107
IPR017441
39-61 PROTEIN_KINASE_ATP
Protein kinase, ATP binding site

IGHGVFGKVYKGVLRDGAKVALK

Gene3D: G3DSA:1.10.510.10
111-300 G3DSA:1.10.510.10

NGNLKRYLYGSDLPTMSMSWEQRLEICIGAARGLHFLHTRAVIHRDVKSINILLDENFVAKITDFGISKKGTELDQTHLSTVVKGTFGYLDPEYFIKGRLTEKSDVYSFGVVLLEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNIADKIRPESLRKFGETAVKCLALSSEDRPSMGDVLW

PatternScan: PS00108
IPR008271
152-164 PROTEIN_KINASE_ST
Serine/threonine-protein kinase, active site

VIHRDVKSINILL


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Analyses

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