PRGDB00048968 (Pto)

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Pto
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 70913130 (DQ019191)
Gene Class Unknown
Domain Type Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase
Gene Species Solanum chilense

Comment?

Lycopersicon chilense clone chi558 Pto disease resistance protein (Pto) gene, partial cds.

DNA Sequence

ACAAATTCCATAAATGATGCTTTAAGCTCGAGTTATCTCGTTCCTTTTGAAAGTTATCGAGTTCCTTTATTAGATTTGGAGGAAGCAACCAACAATTTTGATGACAAGTTTTTCATTGGAGAGGGTGGATTTGGGAAGGTTTACAAGGGTGTTTTGCGTGATGGAACAAAGGTCGCCCTGAAAAGTTGTAAACCTGAGTCCTCACAAGGTATTGAAGAGTTCGAAACAGAAATTGAGATTCTCTCATTTTGCAGACATCCGCATCTGGTTTCATTGATAGGATTCTGTGATGAAAGAAATGAGATGATTCTAATTTATAAATACATGGAGAATGGGAACCTCAAGAGACATTTGTATGGATCAGATCTACTTTTCATGAGCTGGGAGCAGAGGCTGGAGATATGCATAGGGGCAGCCAGAGGTCTACACTACCTTCATACTAGAGCAATTATACATCGTGATGTCAAGTCTATAAACATATTGCTTGATGAGAATTTTGTGGCAAAAATTACTGATTTTGGAATATCCAAGAAAGGGACTGAGCTTGATCAAACCCATCTTAGTACAATAGTGAAAGGAACTCTCGGCTACCTTGACCCTGAATATTTTATAAAGGGACGACTCACAGAAAAATCTGATGTTTATTCTTTCGGTGTTGTTTTATTCGAAGTTCTTTGTGCTAGGTCTGCCATAGTTCAATCTCTTCCAAGGGAGATGGTTAATTTAGCTGAATGGGCAGTGGAGTCGCATAATAATGGACAGTTGGAACAAATCGTAGATCCCAATCTTGCAGATAAAATAAGACCAGAGTCCCTCAGGAAGTTTGGAGAAACAGCGGTAAAATGCTTAGCTTTGTCTAGTGAAGATAGGCCATCAATGGGTGATGTGTTGTGGAAACTGGAGTATGCA


Protein sequences

Name Description Sequence
Pto disease resistance protein Pto disease resistance protein [Lycopersicon chilense].

TNSINDALSSSYLVPFESYRVPLLDLEEATNNFDDKFFIGEGGFGKVYKGVLRDGTKVALKSCKPESSQGIEEFETEIEILSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLLFMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVAKITDFGISKKGTELDQTHLSTIVKGTLGYLDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGETAVKCLALSSEDRPSMGDVLWKLEYA

Domains

Domain Start-End Description Sequence

superfamily: SSF56112
IPR011009
5-300 Kinase_like
Protein kinase-like domain

NDALSSSYLVPFESYRVPLLDLEEATNNFDDKFFIGEGGFGKVYKGVLRDGTKVALKSCKPESSQGIEEFETEIEILSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLLFMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVAKITDFGISKKGTELDQTHLSTIVKGTLGYLDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGETAVKCLALSSEDRPSMGDVLWKL

HMMPanther: PTHR24420
17-303 PTHR24420,FAMILY NOT NAMED

ESYRVPLLDLEEATNNFDDKFFIGEGGFGKVYKGVLRDGTKVALKSCKPESSQGIEEFETEIEILSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLLFMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVAKITDFGISKKGTELDQTHLSTIVKGTLGYLDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGETAVKCLALSSEDRPSMGDVLWKLEYA

HMMPanther: PTHR24420:SF785
17-303 PTHR24420:SF785

ESYRVPLLDLEEATNNFDDKFFIGEGGFGKVYKGVLRDGTKVALKSCKPESSQGIEEFETEIEILSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLLFMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVAKITDFGISKKGTELDQTHLSTIVKGTLGYLDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGETAVKCLALSSEDRPSMGDVLWKLEYA

Gene3D: G3DSA:3.30.200.20
22-109 G3DSA:3.30.200.20

PLLDLEEATNNFDDKFFIGEGGFGKVYKGVLRDGTKVALKSCKPESSQGIEEFETEIEILSFCRHPHLVSLIGFCDERNEMILIYKYM

ProfileScan: PS50011
IPR000719
33-303 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

FDDKFFIGEGGFGKVYKGVLRDGTKVALKSCKPESSQGIEEFETEIEILSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLLFMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVAKITDFGISKKGTELDQTHLSTIVKGTLGYLDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGETAVKCLALSSEDRPSMGDVLWKLEYA

PatternScan: PS00107
IPR017441
39-61 PROTEIN_KINASE_ATP
Protein kinase, ATP binding site

IGEGGFGKVYKGVLRDGTKVALK

HMMPfam: PF07714
IPR001245
39-297 Pkinase_Tyr
Serine-threonine/tyrosine-protein kinase catalytic

IGEGGFGKVYKGVLRDGTKVALKSCKPESSQGIEEFETEIEILSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLLFMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVAKITDFGISKKGTELDQTHLSTIVKGTLGYLDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGETAVKCLALSSEDRPSMGDVL

Gene3D: G3DSA:1.10.510.10
112-298 G3DSA:1.10.510.10

GNLKRHLYGSDLLFMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVAKITDFGISKKGTELDQTHLSTIVKGTLGYLDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGETAVKCLALSSEDRPSMGDVLW

PatternScan: PS00108
IPR008271
150-162 PROTEIN_KINASE_ST
Serine/threonine-protein kinase, active site

IIHRDVKSINILL


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Analyses

Blast

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