PRGDB00049049 (lrr1)

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lrr1
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 47457503 (AJ617634)
Gene Class Unknown
Domain Type LRR
Gene Species Populus tremula

Comment?

Populus tremula lrr1 gene for LRR disease resistance protein, isolate llr1_65-2.

DNA Sequence

ATGGAATCCTTAACTGAGCTGCTAGCCGATGGGATTGAAAATGAGCAATTTCTCTCTTCAATTGGACAATTAAAGCATGTTAGAAGGTTATCATTGCGCGGATACAGTTCGGCCCCACCAAGTTGTTCTTTGATTACAGCAAATGTTTCGAATTTGAAACGTTGGCTACCAACATCTTTTATTAAATGGATATCAGTGAAACGTCTTGAGCTTTCTAAAGGTGGTTTGTCTGATCGCGCAATTAACTGTGTTGATTTCAGTGGTTTGTCCGCTCTAGAAGTATTGGATCTAAGTGGAAACAAATTCTCTAGTCTGCCTTCTGGGATCGGCTTCCTTCCCAAGCTATGGTGCTTGGGTGTTAAGACATGTGAATATCTTGTATCAATCTCAGATGTTCCCTCAAGTTTATGCTTTTTAGGTGCATCTTATTGCAAATCATTGGAAAGAGTAAGAATACCAATCGAGTAA


Protein sequences

Name Description Sequence
putative LRR disease resistance protein putative LRR disease resistance protein [Populus tremula].

MESLTELLADGIENEQFLSSIGQLKHVRRLSLRGYSSAPPSCSLITANVSNLKRWLPTSFIKWISVKRLELSKGGLSDRAINCVDFSGLSALEVLDLSGNKFSSLPSGIGFLPKLWCLGVKTCEYLVSISDVPSSLCFLGASYCKSLERVRIPIE


Domains

Domain Start-End Description Sequence

Gene3D: G3DSA:3.80.10.10
11-129 G3DSA:3.80.10.10

GIENEQFLSSIGQLKHVRRLSLRGYSSAPPSCSLITANVSNLKRWLPTSFIKWISVKRLELSKGGLSDRAINCVDFSGLSALEVLDLSGNKFSSLPSGIGFLPKLWCLGVKTCEYLVSI

superfamily: SSF52058
16-145 SSF52058,LRR

QFLSSIGQLKHVRRLSLRGYSSAPPSCSLITANVSNLKRWLPTSFIKWISVKRLELSKGGLSDRAINCVDFSGLSALEVLDLSGNKFSSLPSGIGFLPKLWCLGVKTCEYLVSISDVPSSLCFLGASYCK

HMMSmart: SM00369
IPR003591
89-112 LRR_TYP
Leucine-rich repeat, typical subtype

LSALEVLDLSGNKFSSLPSGIGFL

ProfileScan: PS51450
IPR001611
91-113 LRR,Leucine-rich repeat profile.
Leucine-rich repeat

ALEVLDLSGNKFSSLPSGIGFLP






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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