PRGDB00049096 (T3F20.26)

From PRG Wiki
Jump to: navigation, search
T3F20.26
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 7109457 (AC018748)
Gene Class RLP
Domain Type LRR, Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase
Gene Species Arabidopsis thaliana

Comment?

Sequence of BAC T3F20 from Arabidopsis thaliana chromosome 1, complete sequence.

DNA Sequence

AGGTTACATGGCTCCAGAGTATGCAATGAGAGGTTACTTAACAGACAAAGCAGATGTTTATAGCTTCGGTGTAGTCTGTTTAGAGATTGTTAGCGGAAAGAGCAACACAAATTACAGACCAAAAGAAGAGTTTATTTACCTTCTTGACTGGGCATATGTCTTGCAAGAACAAGGGAGTCTTCTAGAACTCGTGGATCCAGATCTCGGTACAAGCTTTTCGAAGAAAGAAGCAATGAGGATGTTGAACATAGCTTTACTCTGTACAAACCCATCTCCAACATTGAGACCACCGATGTCATCTGTTGTAAGTATGCTACAAGGAAAAATCAAAGTCCAACCACCACTGGTGAAACGTGAAGCTGATCCAAGTGGTTCAGCCGCAATGAGGTTTAAGGCCTTAGAGCATTTGTCACAAGACAGCGAGTCACAAGTCTCAACCTATACAAGAAACAAAGAACACAAAAGCTCCTCCTCGATGGACGGTCCTTGGGTCGATTCTTCCTTCTCTGATCCGAGCAAAGATGTTAGCCTATTACAGCAAGAAGAAGGAAATTCATCATCTTCGTCGAGGAGACTGTTAGATGATCTTACTGATGTGGAGATTGAGTAAGCACAGAGAAACAAAGACTTCACTTGGATTGGTCCACGAGGAACAAGGTATGCATAGGGATTGCGAAAGGATTGGCTTATCTACACGAGGAATCAAGGCTGAAGATTGTGCACAGAGACATTAAAGCGACAAATGTGCTTCTTGATCTGTCTCTAAATGCTAAGATCTCTGATTTTGGTCTAGCGAAACTCGATGAAGAAGAGAATACACATATCAGCACAAGGATTGCAGGAACAATGGTGTTCTCGCTGATGGGATGACCATAGCGGTGAAGCAGCTTTCATCGAAATCTAAGCAAGGAAACCGAGAATTTGTGACTGAGATCGGTATGATATCTGCGTTGCAACACCCTAATCTTGTGAAACTTTATGGTTGTTGCATCGAAGGGAAAGAGCTTTTGCTTGTGTATGAATACTTAGAGAACAACAGTCTCGCTCGCGCACTCTTTGAAGAGCTTCGGGGACTCGATTTGCAGACAGGATCGTTCACATTGAAGCAAATCAAACGTGCTACTAACAACTTTGATCCAGAAAACAAGATTGGAGAAGGAGGATTTGGACCGGTTTATAAGATTTCAAGGTTGATACCGGAAAACCATTGTCCAATGGAGTAGTTGCAGGCATTGTAATCGCAGCGTGTGTAGCTTTCGGGTTGCTGGTACTTGTAATCCTCAGGCTAACAGGTTACTTAGGTGGAAAAGAAGTGGATGAAAATGGGGATTTTGTTGGAGAGGGACTTTAACATAGCACAGAGAGCAGGTGGAGTTGGTAAACCGTTCCTAAGGCAAGTTGATGAAGTTCAAGTGAATGGAAGTACGTTGGAGATTCATTTGAAGTGGACAGGAAAAGGCACAAACGTAATACCAACAAGAGGTGTTTACGGGCCTCTCATATCCGCTATAACCGTCACACCGAATTCTTCCTTGTTCATTAACTGTGGAGGAAACCGACTCAAGGTTGATAAAGACGAGTATGCGGATGACTTAAACAAAAGAGGAGCATCAACATTCTCTTCTGTCTCTGAAAGATGGGGATACAGTAGTTCTGGAGCTTGGTTAGGCAATGACGGTGCCACTTACTTAGCAACAGATACGTTTAACTTGATCAATGAATCAACTCCAGAGTATTACAAAACAGCCCGTCTCGCTTCACAATCACTCAAGTACTATGGACTATGCATGAGAAGAGGAAGTTACAAAGTTCAGCTCTATTTTGCAGAGATAATGTTCTCAAATGATCAGACTTATAGTAGCTTAGGGCGGCGACTATTCGACATTTATGTTCAATGTCCAATGGTGCTTAAGAAAGGATCTTCCGTGTCCTGGAGACGCACACCGTATCTGAATAATAACTCATTGACTGGTCCAGTTCCTCAGTTCATTCTTGATAGTAAACAAAACATAGATTTAAGCTCAAACATGTTAAATGGTACAATTCCAGACACATTTCGGAGTCTGAACGCATTCAACTTTATGGTACTAAGAAACTGTTTGATAAGGGAACCTATACCGGAGTACATCGGTACTTCCATGACTATGTTGAAGTTACTGAGGATAACAGATTTGCGTGGACCAACTTCTCCTTTTCCAGACCTTCAAAATATGACGAATATGGAAAGATTAGACCTCCAAGGCACATCAATGGAAGGTCCTATTCCAGCTTCGATTTCAAACTTGAAAAACCTGACTGAATTTCGGATTGATGGAAACTCTCTATCTGGGAAGATACCTGATTTTATTGGAAACTGGACTCGGCTCGTTAGGCTGCTAATCTCTTCAAATAACATCACGGGTCGGATCCCTGAGTCCTTGAGCAATCTCAAGAATTTGACTAATTTGATTATGGAAAGTAATTTATTCACAGGACAACTTCCTCCAAACCTAGGGAACTTAAGAAGCTTGAAAAGATTGGCTGTAACCGGAAACCGACTCTCTGGACCATTTCCTCCTCAGCTCGGACAGATTACTACACTTACTGATGTACAGCTTAGAGGTTTCAATTTGCGAGGAATTATACCGCCTGAATTCGGGAACCTCACACGTCTTACAGAGATTTCAAACATTGCGAACGATCTTTAGAAAGCTTCAAAACCAAACAGTGAACATCGAAAGAACTTCTTGTTTGGACAGAAAATGGAACTTTGTTGCCGAGTCAACCTCCAAGCTACCAACCAGTAACATTACCTGCGACTGTACTTTCAACGCCAGCTCAGTCTGTCGTGTCACAAACATATGGGTTTCTTTTTCTCGACCCGGAAAGGTCTTCTTCTCATCATCTTCATTTGCTTGGATATTTTCGGATCAAATGCTCAACTTTTGCCAGAAGATGAAG



Domains

Domain Start-End Description Sequence

HMMPanther: PTHR24420
11-961 FAMILY NOT NAMED,FAMILY NOT NAMED

LLLIIFICLDIFGSNAQLLPEDEVQTLRTIFRKLQNQTVNIERTSCLDRKWNFVAESTSKLPTSNITCDCTFNASSVCRVTNIQLRGFNLRGIIPPEFGNLTRLTEMAVTGNRLSGPFPPQLGQITTLTDVIMESNLFTGQLPPNLGNLRSLKRLLISSNNITGRIPESLSNLKNLTNFRIDGNSLSGKIPDFIGNWTRLVRLDLQGTSMEGPIPASISNLKNLTELRITDLRGPTSPFPDLQNMTNMERLVLRNCLIREPIPEYIGTSMTMLKLLDLSSNMLNGTIPDTFRSLNAFNFMYLNNNSLTGPVPQFILDSKQNIVQWCLRKDLPCPGDAHHSSLFINCGGNRLKVDKDEYADDLNKRGASTFSSVSERWGYSSSGAWLGNDGATYLATDTFNLINESTPEYYKTARLASQSLKYYGLCMRRGSYKVQLYFAEIMFSNDQTYSSLGRRLFDIYVQGILLERDFNIAQRAGGVGKPFLRQVDEVQVNGSTLEIHLKWTGKGTNVIPTRGVYGPLISAITVTPNFKVDTGKPLSNGVVAGIVIAACVAFGLLVLVILRLTGYLGGKEVDENEELRGLDLQTGSFTLKQIKRATNNFDPENKIGEGGFGPVYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLARALFGTEKQRLHLDWSTRNKVCIGIAKGLAYLHEESRLKIVHRDIKATNVLLDLSLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVCLEIVSGKSNTNYRPKEEFIYLLDWAYVLQEQGSLLELVDPDLGTSFSKKEAMRMLNIALLCTNPSPTLRPPMSSVVSMLQGKIKVQPPLVKREADPSGSAAMRFKALEHLSQDSESQVSTYTRNKEHKSSSSMDGPWVDSSFSDPSKDVSLLQQEEGN

Seg: seg
11-22 seg

LLLIIFICLDIF

HMMPanther: PTHR24420:SF696
11-961 LEUCINE-RICH REPEAT FAMILY PROTEIN / PROTEIN KINASE FAMILY PROTEIN

LLLIIFICLDIFGSNAQLLPEDEVQTLRTIFRKLQNQTVNIERTSCLDRKWNFVAESTSKLPTSNITCDCTFNASSVCRVTNIQLRGFNLRGIIPPEFGNLTRLTEMAVTGNRLSGPFPPQLGQITTLTDVIMESNLFTGQLPPNLGNLRSLKRLLISSNNITGRIPESLSNLKNLTNFRIDGNSLSGKIPDFIGNWTRLVRLDLQGTSMEGPIPASISNLKNLTELRITDLRGPTSPFPDLQNMTNMERLVLRNCLIREPIPEYIGTSMTMLKLLDLSSNMLNGTIPDTFRSLNAFNFMYLNNNSLTGPVPQFILDSKQNIVQWCLRKDLPCPGDAHHSSLFINCGGNRLKVDKDEYADDLNKRGASTFSSVSERWGYSSSGAWLGNDGATYLATDTFNLINESTPEYYKTARLASQSLKYYGLCMRRGSYKVQLYFAEIMFSNDQTYSSLGRRLFDIYVQGILLERDFNIAQRAGGVGKPFLRQVDEVQVNGSTLEIHLKWTGKGTNVIPTRGVYGPLISAITVTPNFKVDTGKPLSNGVVAGIVIAACVAFGLLVLVILRLTGYLGGKEVDENEELRGLDLQTGSFTLKQIKRATNNFDPENKIGEGGFGPVYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLARALFGTEKQRLHLDWSTRNKVCIGIAKGLAYLHEESRLKIVHRDIKATNVLLDLSLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVCLEIVSGKSNTNYRPKEEFIYLLDWAYVLQEQGSLLELVDPDLGTSFSKKEAMRMLNIALLCTNPSPTLRPPMSSVVSMLQGKIKVQPPLVKREADPSGSAAMRFKALEHLSQDSESQVSTYTRNKEHKSSSSMDGPWVDSSFSDPSKDVSLLQQEEGN

superfamily: SSF52058
27-322 L domain-like,LRR

QLLPEDEVQTLRTIFRKLQNQTVNIERTSCLDRKWNFVAESTSKLPTSNITCDCTFNASSVCRVTNIQLRGFNLRGIIPPEFGNLTRLTEMAVTGNRLSGPFPPQLGQITTLTDVIMESNLFTGQLPPNLGNLRSLKRLLISSNNITGRIPESLSNLKNLTNFRIDGNSLSGKIPDFIGNWTRLVRLDLQGTSMEGPIPASISNLKNLTELRITDLRGPTSPFPDLQNMTNMERLVLRNCLIREPIPEYIGTSMTMLKLLDLSSNMLNGTIPDTFRSLNAFNFMYLNNNSLTGPVP

Gene3D: G3DSA:3.80.10.10
76-324 no description

ITCDCTFNASSVCRVTNIQLRGFNLRGIIPPEFGNLTRLTEMAVTGNRLSGPFPPQLGQITTLTDVIMESNLFTGQLPPNLGNLRSLKRLLISSNNITGRIPESLSNLKNLTNFRIDGNSLSGKIPDFIGNWTRLVRLDLQGTSMEGPIPASISNLKNLTELRITDLRGPTSPFPDLQNMTNMERLVLRNCLIREPIPEYIGTSMTMLKLLDLSSNMLNGTIPDTFRSLNAFNFMYLNNNSLTGPVPQF

HMMPfam: PF00560
IPR001611
161-183 LRR_1
Leucine-rich repeat

SLKRLLISSNNITGRIPESLSNL

HMMPfam: PF00560
IPR001611
283-304 LRR_1
Leucine-rich repeat

LKLLDLSSNMLNGTIPDTFRSL

HMMPfam: PF11721
IPR021720
351-534 Malectin
Malectin

SLFINCGGNRLKVDKDEYADDLNKRGASTFSSVSERWGYSSSGAWLGNDGATYLATDTFNLINESTPEYYKTARLASQSLKYYGLCMRRGSYKVQLYFAEIMFSNDQTYSSLGRRLFDIYVQGILLERDFNIAQRAGGVGKPFLRQVDEVQVNGSTLEIHLKWTGKGTNVIPTRGVYGPLISAI

Seg: seg
551-563 seg

GVVAGIVIAACVA

superfamily: SSF56112
IPR011009
581-890 Protein kinase-like (PK-like)
Protein kinase-like domain

KEVDENEELRGLDLQTGSFTLKQIKRATNNFDPENKIGEGGFGPVYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLARALFGTEKQRLHLDWSTRNKVCIGIAKGLAYLHEESRLKIVHRDIKATNVLLDLSLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVCLEIVSGKSNTNYRPKEEFIYLLDWAYVLQEQGSLLELVDPDLGTSFSKKEAMRMLNIALLCTNPSPTLRPPMSSVVSMLQGKIKVQP

Gene3D: G3DSA:3.30.200.20
598-672 no description

SFTLKQIKRATNNFDPENKIGEGGFGPVYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYG

HMMSmart: SM00219
IPR020635
611-882 Tyrosine kinase, catalytic domain
Tyrosine-protein kinase, catalytic domain

FDPENKIGEGGFGPVYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLARALFGTEKQRLHLDWSTRNKVCIGIAKGLAYLHEESRLKIVHRDIKATNVLLDLSLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVCLEIVSGKSNTNYRPKEEFIYLLDWAYVLQEQGSLLELVDPDLGTSFSKKEAMRMLNIALLCTNPSPTLRPPMSSVVSML

ProfileScan: PS50011
IPR000719
611-892 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

FDPENKIGEGGFGPVYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLARALFGTEKQRLHLDWSTRNKVCIGIAKGLAYLHEESRLKIVHRDIKATNVLLDLSLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVCLEIVSGKSNTNYRPKEEFIYLLDWAYVLQEQGSLLELVDPDLGTSFSKKEAMRMLNIALLCTNPSPTLRPPMSSVVSMLQGKIKVQPPL

HMMSmart: SM00220
IPR002290
611-880 Serine/Threonine protein kinases, catalytic
Serine/threonine- / dual-specificity protein kinas

FDPENKIGEGGFGPVYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLARALFGTEKQRLHLDWSTRNKVCIGIAKGLAYLHEESRLKIVHRDIKATNVLLDLSLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVCLEIVSGKSNTNYRPKEEFIYLLDWAYVLQEQGSLLELVDPDLGTSFSKKEAMRMLNIALLCTNPSPTLRPPMSSVVS

HMMPfam: PF07714
IPR001245
614-882 Pkinase_Tyr
Serine-threonine/tyrosine-protein kinase catalytic

ENKIGEGGFGPVYKGVLADGMTIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGKELLLVYEYLENNSLARALFGTEKQRLHLDWSTRNKVCIGIAKGLAYLHEESRLKIVHRDIKATNVLLDLSLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVCLEIVSGKSNTNYRPKEEFIYLLDWAYVLQEQGSLLELVDPDLGTSFSKKEAMRMLNIALLCTNPSPTLRPPMSSVVSML

Gene3D: G3DSA:1.10.510.10
673-879 no description

CCIEGKELLLVYEYLENNSLARALFGTEKQRLHLDWSTRNKVCIGIAKGLAYLHEESRLKIVHRDIKATNVLLDLSLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGVVCLEIVSGKSNTNYRPKEEFIYLLDWAYVLQEQGSLLELVDPDLGTSFSKKEAMRMLNIALLCTNPSPTLRPPMSSVV

Seg: seg
679-692 seg

ELLLVYEYLENNSL

PatternScan: PS00108
IPR008271
733-745 PROTEIN_KINASE_ST
Serine/threonine-protein kinase, active site

IVHRDIKATNVLL

Seg: seg
953-973 seg

SLLQQEEGNSSSSSRRLLDDL






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox