PRGDB00049144 (putative TIR/NBS/LRR disease resistance protein)

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putative TIR/NBS/LRR disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 21655204 (AY091566)
Gene Class TNL
Domain Type LRR, NBS, LRR, LRR, TIR, Others
Gene Species Pinus taeda

Comment?

Pinus taeda putative TIR/NBS/LRR disease resistance protein mRNA, partial cds.

DNA Sequence

GGCACGAGGCTACTCTCTCTTCCATGGCATCCACCTCATATGGATCCTCCAACACCAACAACAGCTTTGTCTTTGATATCTTTCTCAACCACAGGGGTCCTGACTCCAAGAAAACCCTCGCCAAACATCTCTATGACGGCCTTAGCAAACACGGACTGCGAGTATTTCTCGACGAAGATGAATTGCAAGCAGGAGAGTATATAAAACCTCAAATCGAGAGTGCCATTCGAACAGCTTGGGTGCATATCGCTATTTTCTCTAAAGGATATGCAGACTCACCTTGGTGTCTTAATGAGCTCTTGCTCATGTTCCAATCGGGGTCAACAATTATTCCAGTCTTCTATGATGTCGACCCTGCAGATCTTCGATGGGTAACGCACAGCGAAAAAGGAGTCTATGCTCGATCCCTGCAAACTCTCGAAAAGAAGAGAAAGGCCGATTCTACACCACGATACGACCCCGATACCATCCAGAAATGGAGGAAGGCTCTCACTGATGCTGCAGAAATAAAAGGTTTCGATAAGAAGACGTATAATGGCAGCTCNCTTGAACAGGTCGTAAAAGGAGTGTTGGAAAAGGTTAAAAGGCCATTAAATGTGTCTACATATCCAACTGGGTTGGATGAGAAAGTTGCAGAATTTGAACGGGCAATGTTACTCAACCAGCAAAGCAGCAGAGAGACTAGAGTTATAGGAATTGTCGGGCTTGGCGGAGCTGGCAAAACCACCCTAGCAAAGGAGATCTTTAACCGTCGAAGATCAAATTACAAGCAAATTTACTTTCAATCCGATGTCAGAGAAAACGCAGCGAGAAAATCTTTAAAATCTTTGCAGAAACTGATTCTTAAGCACTTGGCTAAAGTCGATGTCGGAATAGACAGCACTGATGATGGTATAGAGAAACTCCGAAGGTATCTTCAATCTTCTCATGCTTTCTTAATTTTAGATGATGTGGACCATTTTCAGCAGGTGGAAGCATTACTTTTACCGGTGAGAGACGTGGTTAGGCAAGGTAGCTTAATTCTAGTCACATCTCGAAACAAGGATATACTTAAAAGGTCAGGGATTGCGGAATCTTTCATTTTCACGGTTACAGGACTCAGTCCACCACAATCGCGAGAGCTATTCTGCTGCCATGCGTTCGACCAGCGATATCCTCCTATAGAATTTGAACAAGTGGTCGAAGAGTTTGTGCATGCTTGCGCTGATTTGCCCTTATCCCTTAAAGTGCTCGGAGGTCTTCTTCGTGGAAAAGATTTGAAGTATGGGAAAGAGCTATTGCACGATATCTCCAAAAATCTTCCCCAAGATATAATGGCTACACTCAAAATTAGCTATGACAGTCTCGGTAAAATAGAGAAGCAGATTTTCTTAGACATTGTCTGCTTCTTTATAGGAGAGGACAAAGATACAGCTATAAGAATCTGGGATGGAACGGAGTGGGGAGGATCGCTTCGTTTTCAGAACCTGGAGAGTAGGTGTCTCGTGGAAGTAGACGATGAAAACTGTATAAGAATGCACGACCACCTGAGGGACCTGGGCAGACAAATTGCGGAGACTGAACCTCCAGAATGGACATTTCGCCTTTCGTGCCCAACCCACGACATTCGGCTTCTGTCCGACAAATCACTGGTATGTATTTTGAACTTTAGACCCATATCCAAAATAGTGTTTTTGTCAAAGTTGTGTGTGTTATGTTTTGAATACTTAATAGTGATTCTAATAAACATCTTTGAGAAAACAATATATAAGGTGCGCGGAATTAGCACTTATCACTCTCAAGGCTGCCAAAGGGCTCAACCATTGTTCACAAACCTCAAGGACTTGGCAGGCAGTCGTTTCACAAATTATGTGAACGGGTTGCAGCTGATTAGGACGGAAGGTTGTTTTGAGGAGAGCGAATTCATCGAAAGCATATTCCGCGGTGCCATGTCACTCATATGGCTCTGTTGGGTTGACTTTCCGTACTCCAGCCTACCTTCTTGGATTTCACTCAAGAATTTAAGAGTTCTAAGAATAGAGACTTACGGACTTCAAACGCTGTGGCTGCATGAATCGCAGGCACCGCAGCAGTTGAGGGAATTGTATGTTAAAGCTAGCGATGTGGAGGTTCCGAAGTCTATTGGGAAGTTGACCCATCTCGAAAAAATTGTGGTCTCTGTTTCTGATCATTTAACATTACCAGACGAACTCTGGCATCTACAATCGTTGAAACACTTGGAATTAGTGGGAGGACTCTTACCTCACAGATGCGGGGCGTGCTCCAGTATGAACATACTCCCAGATTCGTTTGGGAACTTGACGAATCTCCAAACTATTACCCTGCACTCCTGGAGTAATCTGCGGGTGCTTCCAGATTCGATTGGGAACTTGACGAATCTCCAAACTATTCAGATGTACAGGNGCGAGAGTTTACAGGTGCTTCCAGATTCGTTTGGAAACTTGACGAATCTCAAAACTATTAAGCTGTCCCAGTGCGGGAGTCTGTGCGTGCTTCCAGAATTGTTTGGGAACTTGACTAATCTCCAAACTATTGACATCTCATGCTGCTCTAGTCTGAAGGTGCTTCCAGATTCGTTTGGGAACTTGAAGAATCTCCAAACTATTGACCTGTCCTCCTGCGCGAGTCTACAGTTACTTCCAGGTTCGTTTGGAAACTTGACGAATCTCCAAACCATCGACCTGTCCTCTTGCGATAGTCTGCTGGTGCTTCCAGATTCGTTTGGAAACTTGACGAATCTCCAAACTATTAACCTGTCCGGGTGCACTAGGCTGCAGGTGCTTGCAGATTCGTTTGGAAACTTAATACAACTTGAAGGTCTACAGTTTGACAGATTGACCGTCTCCCACGAAGTCTATGAAAAGATGCACACATTTAAATGCTCGGGTGTCATTGATTTCAACAGGGTAGAAGTAGTGGCCCCGGCAGGTTTTCTCACTTTCTTGTCTCAGTTTCTTGTGAGATAG


Protein sequences

Name Description Sequence
putative TIR/NBS/LRR disease resistance protein putative TIR/NBS/LRR disease resistance protein [Pinus taeda].

HEATLSSMASTSYGSSNTNNSFVFDIFLNHRGPDSKKTLAKHLYDGLSKHGLRVFLDEDELQAGEYIKPQIESAIRTAWVHIAIFSKGYADSPWCLNELLLMFQSGSTIIPVFYDVDPADLRWVTHSEKGVYARSLQTLEKKRKADSTPRYDPDTIQKWRKALTDAAEIKGFDKKTYNGSSLEQVVKGVLEKVKRPLNVSTYPTGLDEKVAEFERAMLLNQQSSRETRVIGIVGLGGAGKTTLAKEIFNRRRSNYKQIYFQSDVRENAARKSLKSLQKLILKHLAKVDVGIDSTDDGIEKLRRYLQSSHAFLILDDVDHFQQVEALLLPVRDVVRQGSLILVTSRNKDILKRSGIAESFIFTVTGLSPPQSRELFCCHAFDQRYPPIEFEQVVEEFVHACADLPLSLKVLGGLLRGKDLKYGKELLHDISKNLPQDIMATLKISYDSLGKIEKQIFLDIVCFFIGEDKDTAIRIWDGTEWGGSLRFQNLESRCLVEVDDENCIRMHDHLRDLGRQIAETEPPEWTFRLSCPTHDIRLLSDKSLVCILNFRPISKIVFLSKLCVLCFEYLIVILINIFEKTIYKVRGISTYHSQGCQRAQPLFTNLKDLAGSRFTNYVNGLQLIRTEGCFEESEFIESIFRGAMSLIWLCWVDFPYSSLPSWISLKNLRVLRIETYGLQTLWLHESQAPQQLRELYVKASDVEVPKSIGKLTHLEKIVVSVSDHLTLPDELWHLQSLKHLELVGGLLPHRCGACSSMNILPDSFGNLTNLQTITLHSWSNLRVLPDSIGNLTNLQTIQMYRXESLQVLPDSFGNLTNLKTIKLSQCGSLCVLPELFGNLTNLQTIDISCCSSLKVLPDSFGNLKNLQTIDLSSCASLQLLPGSFGNLTNLQTIDLSSCDSLLVLPDSFGNLTNLQTINLSGCTRLQVLADSFGNLIQLEGLQFDRLTVSHEVYEKMHTFKCSGVIDFNRVEVVAPAGFLTFLSQFLVR

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
12-172 TIR
Toll/interleukin-1 receptor homology (TIR) domain

SYGSSNTNNSFVFDIFLNHRGPDSKKTLAKHLYDGLSKHGLRVFLDEDELQAGEYIKPQIESAIRTAWVHIAIFSKGYADSPWCLNELLLMFQSGSTIIPVFYDVDPADLRWVTHSEKGVYARSLQTLEKKRKADSTPRYDPDTIQKWRKALTDAAEIKGF

Gene3D: G3DSA:3.40.50.10140
20-127 G3DSA:3.40.50.10140

NSFVFDIFLNHRGPDSKKTLAKHLYDGLSKHGLRVFLDEDELQAGEYIKPQIESAIRTAWVHIAIFSKGYADSPWCLNELLLMFQSGSTIIPVFYDVDPADLRWVTHS

ProfileScan: PS50104
IPR000157
22-169 TIR
Toll/interleukin-1 receptor homology (TIR) domain

FVFDIFLNHRGPDSKKTLAKHLYDGLSKHGLRVFLDEDELQAGEYIKPQIESAIRTAWVHIAIFSKGYADSPWCLNELLLMFQSGSTIIPVFYDVDPADLRWVTHSEKGVYARSLQTLEKKRKADSTPRYDPDTIQKWRKALTDAAEI

HMMSmart: SM00255
IPR000157
23-169 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFDIFLNHRGPDSKKTLAKHLYDGLSKHGLRVFLDEDELQAGEYIKPQIESAIRTAWVHIAIFSKGYADSPWCLNELLLMFQSGSTIIPVFYDVDPADLRWVTHSEKGVYARSLQTLEKKRKADSTPRYDPDTIQKWRKALTDAAEI

HMMPfam: PF01582
IPR000157
27-164 TIR
Toll/interleukin-1 receptor homology (TIR) domain

FLNHRGPDSKKTLAKHLYDGLSKHGLRVFLDEDELQAGEYIKPQIESAIRTAWVHIAIFSKGYADSPWCLNELLLMFQSGSTIIPVFYDVDPADLRWVTHSEKGVYARSLQTLEKKRKADSTPRYDPDTIQKWRKALT

HMMPanther: PTHR11017
55-943 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

FLDEDELQAGEYIKPQIESAIRTAWVHIAIFSKGYADSPWCLNELLLMFQSGSTIIPVFYDVDPADLRWVTHSEKGVYARSLQTLEKKRKADSTPRYDPDTIQKWRKALTDAAEIKGFDKKTYNGSSLEQVVKGVLEKVKRPLNVSTYPTGLDEKVAEFERAMLLNQQSSRETRVIGIVGLGGAGKTTLAKEIFNRRRSNYKQIYFQSDVRENAARKSLKSLQKLILKHLAKVDVGIDSTDDGIEKLRRYLQSSHAFLILDDVDHFQQVEALLLPVRDVVRQGSLILVTSRNKDILKRSGIAESFIFTVTGLSPPQSRELFCCHAFDQRYPPIEFEQVVEEFVHACADLPLSLKVLGGLLRGKDLKYGKELLHDISKNLPQDIMATLKISYDSLGKIEKQIFLDIVCFFIGEDKDTAIRIWDGTEWGGSLRFQNLESRCLVEVDDENCIRMHDHLRDLGRQIAETEPPEWTFRLSCPTHDIRLLSDKSLVCILNFRPISKIVFLSKLCVLCFEYLIVILINIFEKTIYKVRGISTYHSQGCQRAQPLFTNLKDLAGSRFTNYVNGLQLIRTEGCFEESEFIESIFRGAMSLIWLCWVDFPYSSLPSWISLKNLRVLRIETYGLQTLWLHESQAPQQLRELYVKASDVEVPKSIGKLTHLEKIVVSVSDHLTLPDELWHLQSLKHLELVGGLLPHRCGACSSMNILPDSFGNLTNLQTITLHSWSNLRVLPDSIGNLTNLQTIQMYRXESLQVLPDSFGNLTNLKTIKLSQCGSLCVLPELFGNLTNLQTIDISCCSSLKVLPDSFGNLKNLQTIDLSSCASLQLLPGSFGNLTNLQTIDLSSCDSLLVLPDSFGNLTNLQTINLSGCTRLQVLADSFGNLIQLEGLQFD

HMMPanther: PTHR11017:SF20
55-943 PTHR11017:SF20,SUBFAMILY NOT NAMED

FLDEDELQAGEYIKPQIESAIRTAWVHIAIFSKGYADSPWCLNELLLMFQSGSTIIPVFYDVDPADLRWVTHSEKGVYARSLQTLEKKRKADSTPRYDPDTIQKWRKALTDAAEIKGFDKKTYNGSSLEQVVKGVLEKVKRPLNVSTYPTGLDEKVAEFERAMLLNQQSSRETRVIGIVGLGGAGKTTLAKEIFNRRRSNYKQIYFQSDVRENAARKSLKSLQKLILKHLAKVDVGIDSTDDGIEKLRRYLQSSHAFLILDDVDHFQQVEALLLPVRDVVRQGSLILVTSRNKDILKRSGIAESFIFTVTGLSPPQSRELFCCHAFDQRYPPIEFEQVVEEFVHACADLPLSLKVLGGLLRGKDLKYGKELLHDISKNLPQDIMATLKISYDSLGKIEKQIFLDIVCFFIGEDKDTAIRIWDGTEWGGSLRFQNLESRCLVEVDDENCIRMHDHLRDLGRQIAETEPPEWTFRLSCPTHDIRLLSDKSLVCILNFRPISKIVFLSKLCVLCFEYLIVILINIFEKTIYKVRGISTYHSQGCQRAQPLFTNLKDLAGSRFTNYVNGLQLIRTEGCFEESEFIESIFRGAMSLIWLCWVDFPYSSLPSWISLKNLRVLRIETYGLQTLWLHESQAPQQLRELYVKASDVEVPKSIGKLTHLEKIVVSVSDHLTLPDELWHLQSLKHLELVGGLLPHRCGACSSMNILPDSFGNLTNLQTITLHSWSNLRVLPDSIGNLTNLQTIQMYRXESLQVLPDSFGNLTNLKTIKLSQCGSLCVLPELFGNLTNLQTIDISCCSSLKVLPDSFGNLKNLQTIDLSSCASLQLLPGSFGNLTNLQTIDLSSCDSLLVLPDSFGNLTNLQTINLSGCTRLQVLADSFGNLIQLEGLQFD

Gene3D: G3DSA:3.40.50.300
215-351 G3DSA:3.40.50.300

RAMLLNQQSSRETRVIGIVGLGGAGKTTLAKEIFNRRRSNYKQIYFQSDVRENAARKSLKSLQKLILKHLAKVDVGIDSTDDGIEKLRRYLQSSHAFLILDDVDHFQQVEALLLPVRDVVRQGSLILVTSRNKDILK

HMMPfam: PF00931
IPR002182
223-477 NB-ARC,NBS
NB-ARC

SSRETRVIGIVGLGGAGKTTLAKEIFNRRRSNYKQIYFQSDVRENAARKSLKSLQKLILKHLAKVDVGIDSTDDGIEKLRRYLQSSHAFLILDDVDHFQQVEALLLPVRDVVRQGSLILVTSRNKDILKRSGIAESFIFTVTGLSPPQSRELFCCHAFDQRYPPIEFEQVVEEFVHACADLPLSLKVLGGLLRGKDLKYGKELLHDISKNLPQDIMATLKISYDSLGKIEKQIFLDIVCFFIGEDKDTAIRIWDG

superfamily: SSF52540
225-437 SSF52540

RETRVIGIVGLGGAGKTTLAKEIFNRRRSNYKQIYFQSDVRENAARKSLKSLQKLILKHLAKVDVGIDSTDDGIEKLRRYLQSSHAFLILDDVDHFQQVEALLLPVRDVVRQGSLILVTSRNKDILKRSGIAESFIFTVTGLSPPQSRELFCCHAFDQRYPPIEFEQVVEEFVHACADLPLSLKVLGGLLRGKDLKYGKELLHDISKNLPQDI

HMMSmart: SM00382
IPR003593
226-385 AAA,NBS
AAA+ ATPase domain

ETRVIGIVGLGGAGKTTLAKEIFNRRRSNYKQIYFQSDVRENAARKSLKSLQKLILKHLAKVDVGIDSTDDGIEKLRRYLQSSHAFLILDDVDHFQQVEALLLPVRDVVRQGSLILVTSRNKDILKRSGIAESFIFTVTGLSPPQSRELFCCHAFDQRYP

FPrintScan: PR00364
IPR000767
229-244 DISEASERSIST
Disease resistance protein

VIGIVGLGGAGKTTLA

FPrintScan: PR00364
IPR000767
304-318 DISEASERSIST
Disease resistance protein

YLQSSHAFLILDDVD

FPrintScan: PR00364
IPR000767
400-414 DISEASERSIST
Disease resistance protein

CADLPLSLKVLGGLL

superfamily: SSF46785
435-534 SSF46785

QDIMATLKISYDSLGKIEKQIFLDIVCFFIGEDKDTAIRIWDGTEWGGSLRFQNLESRCLVEVDDENCIRMHDHLRDLGRQIAETEPPEWTFRLSCPTHD

superfamily: SSF52058
504-944 SSF52058,LRR

RMHDHLRDLGRQIAETEPPEWTFRLSCPTHDIRLLSDKSLVCILNFRPISKIVFLSKLCVLCFEYLIVILINIFEKTIYKVRGISTYHSQGCQRAQPLFTNLKDLAGSRFTNYVNGLQLIRTEGCFEESEFIESIFRGAMSLIWLCWVDFPYSSLPSWISLKNLRVLRIETYGLQTLWLHESQAPQQLRELYVKASDVEVPKSIGKLTHLEKIVVSVSDHLTLPDELWHLQSLKHLELVGGLLPHRCGACSSMNILPDSFGNLTNLQTITLHSWSNLRVLPDSIGNLTNLQTIQMYRXESLQVLPDSFGNLTNLKTIKLSQCGSLCVLPELFGNLTNLQTIDISCCSSLKVLPDSFGNLKNLQTIDLSSCASLQLLPGSFGNLTNLQTIDLSSCDSLLVLPDSFGNLTNLQTINLSGCTRLQVLADSFGNLIQLEGLQFDR

Gene3D: G3DSA:3.80.10.10
657-741 G3DSA:3.80.10.10

SLPSWISLKNLRVLRIETYGLQTLWLHESQAPQQLRELYVKASDVEVPKSIGKLTHLEKIVVSVSDHLTLPDELWHLQSLKHLEL

Gene3D: G3DSA:3.80.10.10
758-955 G3DSA:3.80.10.10

ILPDSFGNLTNLQTITLHSWSNLRVLPDSIGNLTNLQTIQMYRXESLQVLPDSFGNLTNLKTIKLSQCGSLCVLPELFGNLTNLQTIDISCCSSLKVLPDSFGNLKNLQTIDLSSCASLQLLPGSFGNLTNLQTIDLSSCDSLLVLPDSFGNLTNLQTINLSGCTRLQVLADSFGNLIQLEGLQFDRLTVSHEVYEKM

HMMPfam: PF13855
839-897 LRR_8,Leucine rich repeat

TNLQTIDISCCSSLKVLPDSFGNLKNLQTIDLSSCASLQLLPGSFGNLTNLQTIDLSSC

FPrintScan: PR00364
IPR000767
860-876 DISEASERSIST
Disease resistance protein

GNLKNLQTIDLSSCASL

HMMPfam: PF00560
IPR001611
912-934 LRR_1
Leucine-rich repeat

NLQTINLSGCTRLQVLADSFGNL


List of References

Blake C Meyers, Michele Morgante, Richard W Michelmore
TIR-X and TIR-NBS proteins: two new families related to disease resistance TIR-NBS-LRR proteins encoded in Arabidopsis and other plant genomes.
Plant J.: 2002, 32(1);77-92
PubMed:12366802 WorldCat.org (P p)





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Analyses

Blast

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