PRGDB00049205 (RGA)

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RGA
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 13937089 (AF363799)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Phaseolus vulgaris

Comment?

Phaseolus vulgaris putative disease resistance protein SB5 (RGA) gene, partial cds.

DNA Sequence

GGGGGGGTGGGGAAGACGACACTTGTCAAAGCTTTGTATGACTCCATTTACAAGGAGTTTGAGGGTTCATGTTTTCTTTCCAACGTTAGAGAAACTTCAAATCAAATTAAGGGTATAGAATTTCTGCAACAAAGGCTTCTATCAGAGATTCTTGAGGACAGAAAAATTCAGTTGGGAAGTAAAGAAGAAGGAACCAACACAATAAGACGTAGTCTAGCTTCAAAAAGAGTTTTTATAGTTCTGGACGATGTTGACAACATTGAACAGTTGGAAAACTTGGCAGGGAGAAGATTTTGGTTTGGGGATGGGAGCAGAATCATTGTAACAACGAGAGATCAACATTTGCTTGAGGTTGGTCAGATCAACAATAGATATGAAGTGAAAGTGCTAAACAACCAAGAATCTCTGGAACTCTTCTGTCAAAGTGCATTTAGAAAGAGTTGTCCTGAAAAAAACTATGAAGATCTGTCAAATCGTGCAATAAGCTGCTGCAAAGGCCTCCCCCTCGCCCTC


Protein sequences

Name Description Sequence
putative disease resistance protein SB5 putative disease resistance protein SB5 [Phaseolus vulgaris].

GGVGKTTLVKALYDSIYKEFEGSCFLSNVRETSNQIKGIEFLQQRLLSEILEDRKIQLGSKEEGTNTIRRSLASKRVFIVLDDVDNIEQLENLAGRRFWFGDGSRIIVTTRDQHLLEVGQINNRYEVKVLNNQESLELFCQSAFRKSCPEKNYEDLSNRAISCCKGLPLAL

Domains

Domain Start-End Description Sequence

HMMPfam: PF00931
IPR002182
1-171 NB-ARC,NBS
NB-ARC

GGVGKTTLVKALYDSIYKEFEGSCFLSNVRETSNQIKGIEFLQQRLLSEILEDRKIQLGSKEEGTNTIRRSLASKRVFIVLDDVDNIEQLENLAGRRFWFGDGSRIIVTTRDQHLLEVGQINNRYEVKVLNNQESLELFCQSAFRKSCPEKNYEDLSNRAISCCKGLPLAL

superfamily: SSF52540
1-171 SSF52540

GGVGKTTLVKALYDSIYKEFEGSCFLSNVRETSNQIKGIEFLQQRLLSEILEDRKIQLGSKEEGTNTIRRSLASKRVFIVLDDVDNIEQLENLAGRRFWFGDGSRIIVTTRDQHLLEVGQINNRYEVKVLNNQESLELFCQSAFRKSCPEKNYEDLSNRAISCCKGLPLAL

HMMPanther: PTHR11017:SF20
1-171 PTHR11017:SF20,SUBFAMILY NOT NAMED

GGVGKTTLVKALYDSIYKEFEGSCFLSNVRETSNQIKGIEFLQQRLLSEILEDRKIQLGSKEEGTNTIRRSLASKRVFIVLDDVDNIEQLENLAGRRFWFGDGSRIIVTTRDQHLLEVGQINNRYEVKVLNNQESLELFCQSAFRKSCPEKNYEDLSNRAISCCKGLPLAL

HMMPanther: PTHR11017
1-171 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GGVGKTTLVKALYDSIYKEFEGSCFLSNVRETSNQIKGIEFLQQRLLSEILEDRKIQLGSKEEGTNTIRRSLASKRVFIVLDDVDNIEQLENLAGRRFWFGDGSRIIVTTRDQHLLEVGQINNRYEVKVLNNQESLELFCQSAFRKSCPEKNYEDLSNRAISCCKGLPLAL

Gene3D: G3DSA:3.40.50.300
2-117 G3DSA:3.40.50.300

GVGKTTLVKALYDSIYKEFEGSCFLSNVRETSNQIKGIEFLQQRLLSEILEDRKIQLGSKEEGTNTIRRSLASKRVFIVLDDVDNIEQLENLAGRRFWFGDGSRIIVTTRDQHLLE

FPrintScan: PR00364
IPR000767
71-85 DISEASERSIST
Disease resistance protein

SLASKRVFIVLDDVD

FPrintScan: PR00364
IPR000767
164-171 DISEASERSIST
Disease resistance protein

CKGLPLAL


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Analyses

Blast

Blast matches against Reference R-Genes. Show


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