PRGDB00049222 (RPM1)
| RPM1 | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 4092773 (AF105140) |
| Gene Class | NL |
| Domain Type | LRR, NBS, LRR, Others |
| Gene Species | Brassica napus |
DNA Sequence
ATGGCTTCAGCTACTGTTGATGTTGGGATAGGACTGATTCTCAGCCTCCTAGAAAACGAGACCTTGTTGCTGTCAGGAGTTCACAGCGAGATCGAGAAGATGAAGAAGGAGTTGCTTATCATAAAGTCCTTTCTTGAGGACACACATAAACAAGATTGGAATGGTTCCACCACCACAACAACGGGAACAACAACAACAACTCAACTCTTTCGAACTTTTGTGTCAAACATAAGAGACTTGGCTTACCAAGTGGAAGACATCATCGACGAATTCACCTATCACATCCATGGTTATCGCAGCTGCACAAAGCTTCGGCGTGCGGTTCATTTCCCCAAGTACATGTGGGCTAGGCACTCCATAGCTAAGAAGCTAGGAGCCGTGAATGTCATGATTCGTTCCATTTCTGAATCCATGAAAAGGTACCAAACCTATCAAGGAGCATCAGTATCGCATGTTGATGATGGTGGTGGTACAAAGTGGGTGAATCACATCAGCGAGTCATCTCTGTTCTTTAGTGAAAACAGTCTTGTAGGGATTGATGCAGCTAAAGGAAAGCTCATTGGATGGCTTCTAAGTCCTGAACCTCAAAGGATAGTTGTCTCGGTGGTCGGAATGGGTGGTTCAGGGAAGACTACACTCTCAGCTAACATCTTCAAGTCCCAAACCGTGCGCAAGCATTTCGCGTCATACGCTTGGGTTACTATCTCTAAATCCTATGTGATTGAAGATGTGTTTAGGACAATGATAAAAGAGTTCTACAAAGAAGCAGAAACGCAGATTCCAGGTGAGTTGTACTCCTTAACTTACAGAGAGCTGGTTGAGAAGCTTGTGGAGTATTTGCATTCCAAGAGGTACTTTGTTGTGCTTGATGATGTGTGGAACACTAGTCTGTGGAGGGAGATAAACATCGCTCTACCAGATGGCATTAGCGGAAGCCGTGTTGTGATAACTACTCGCAGCAATAACGTGGCTTCTTTCTCATATGGCAGTGGGAGTAGAAAGCATGAGATTGAGCTCTTGAACGAAGACGAAGCTTGGGTGCTTTTCTGCAACAAAGCGTTTTCTGGAAGCCTTGAGGAATGTAGGAGGAGGAATCTAGAGCTGATAGCAAGGAAGTTACTTGAGAGATGTCAAGGCCTGCCGTTAGCTATAGCTTCTTTGGGGAGCATGATGTCAACAAAGAGGTTGGAGTCAGAGTGGAAGCAAGTCTACAACTCTTTGAACTGGGAACTTAACAACAATCTTGAGCTCAAGGTTGTTAGAAGCATCTTGTCGCTTAGCTTCAGTGATCTGCCGTATCCTCTTAAACGTTGTTTCTTGTACTGTTGTATGTTCCCTGTGAACTATCGGATGAAAAGGAAGAGGCTGGTTAGGATGTGGATGGCGCAACGGTTTGTGGAACCGATCAGAGGAGTGAAAGCGGAGGAAGTGGCTGATGGTTACTTAAATGAGCTTGTTTACAGAAACATGCTTCAAGTTATCTTGTGGAATCCTTTTGGACGTCCCAAAGTGTTCAAGATGCATGATGTGATAAGGGAGATCGCTCTATCTATATCCAAAGCTGAGAGGTTCTGTGATGTTAATGGTGATGATGATGACGATGATGCAGAAACAGCCGAGGATCACGGTACTCGCCATTTATGCATTCAGAAAGAGATGAGATCAGGTACTGTACGTAGAACAAACCTTCACACTCTTTTGGTTTGCACTAAACACAGCATTGAACTGCCTCCAAGTCTGAAACTTCTAAGAGCCTTAGACCTTGAAGGCTCCGGCATCAGCAAGCTACCTGAGATTTTGGTAACTCTGTTCAATTTAAAGTACTTGAACTTGTCGAAAACCGAAGTGAAGGAACTCCCAAGAGACTTTCATAGACTCATCAACTTGGAGACATTGAACACTAGGCACTCCAAGGTTGATGAGCTTCCTCCAGGGATGTGGAAGCTTCGGAAGCTGCGTTATCTGATTACTTTCCGTTGCAACTATGGACATGATTCCAACTGGAACTATGTTTTAGGCACAAAGGTTTCTCCGAGTATCTGCCAGCTGAAGGATTTGCAAGTCATGGACTGCTTCAACGCAGAAGCTGAGCTTATCAAAACGCTAGGGGGCATGACTCAGCTCACGAGAGTAAGTATTGTCATGATTAGAAGAGAACATGGACGTGACTTATGCGAGTCGCTGAACAAGATCAAAAGACTCAGATTCTTATCCCTAACGTCTATTCATGAAGAGGAACCGTTAGAGATAGATAGACTGATAGCAACTGCAAGTATTGAGAAACTCTTTCTTGCAGGGAAACTAGAAAGAGTACCGAGTTGGTTCAGTACTCTTCAGAACGTTACCTATTTGGGTCTGCGCGGCTCTAAGCTGCAAGAAAACTCCATTCACTACCTCCAAACGCTTCCTAAATTAGTATGGCTTTCATTTTATAATGCATACATGGGGACTAGGTTGTGTTTTGCTGAAGGGTTTGAGAATCTGAAGATGCTAGATATAGTCCAGATGAAACATCTGAAAGAGGTTGTGATTGAAGATGGTGCAATGGTTGGGATACAGAAGCTTTACATCAGAGCTTGTAGAGTGTTGGAGTCGGTACCGAGGGGAATAGAGAATCTTGTGAACCTTCAAGAACTGCATTTGAGTCATGTTTCTGATCAGCTAGTGGAGAGGATTCGTGGGGAAGAGGGTGTATACACGTCCAAGGTTAAACATATTCCTGCCATCAAGCATCATTTCAGAACTGAGGATGGCTCTTTCTATGTGAGCCTCTCATCTTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance gene homolog 9N | disease resistance gene homolog 9N [Brassica napus]. | MASATVDVGIGLILSLLENETLLLSGVHSEIEKMKKELLIIKSFLEDTHKQDWNGSTTTTTGTTTTTQLFRTFVSNIRDLAYQVEDIIDEFTYHIHGYRSCTKLRRAVHFPKYMWARHSIAKKLGAVNVMIRSISESMKRYQTYQGASVSHVDDGGGTKWVNHISESSLFFSENSLVGIDAAKGKLIGWLLSPEPQRIVVSVVGMGGSGKTTLSANIFKSQTVRKHFASYAWVTISKSYVIEDVFRTMIKEFYKEAETQIPGELYSLTYRELVEKLVEYLHSKRYFVVLDDVWNTSLWREINIALPDGISGSRVVITTRSNNVASFSYGSGSRKHEIELLNEDEAWVLFCNKAFSGSLEECRRRNLELIARKLLERCQGLPLAIASLGSMMSTKRLESEWKQVYNSLNWELNNNLELKVVRSILSLSFSDLPYPLKRCFLYCCMFPVNYRMKRKRLVRMWMAQRFVEPIRGVKAEEVADGYLNELVYRNMLQVILWNPFGRPKVFKMHDVIREIALSISKAERFCDVNGDDDDDDAETAEDHGTRHLCIQKEMRSGTVRRTNLHTLLVCTKHSIELPPSLKLLRALDLEGSGISKLPEILVTLFNLKYLNLSKTEVKELPRDFHRLINLETLNTRHSKVDELPPGMWKLRKLRYLITFRCNYGHDSNWNYVLGTKVSPSICQLKDLQVMDCFNAEAELIKTLGGMTQLTRVSIVMIRREHGRDLCESLNKIKRLRFLSLTSIHEEEPLEIDRLIATASIEKLFLAGKLERVPSWFSTLQNVTYLGLRGSKLQENSIHYLQTLPKLVWLSFYNAYMGTRLCFAEGFENLKMLDIVQMKHLKEVVIEDGAMVGIQKLYIRACRVLESVPRGIENLVNLQELHLSHVSDQLVERIRGEEGVYTSKVKHIPAIKHHFRTEDGSFYVSLSS |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR23155 | 2-926 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | ASATVDVGIGLILSLLENETLLLSGVHSEIEKMKKELLIIKSFLEDTHKQDWNGSTTTTTGTTTTTQLFRTFVSNIRDLAYQVEDIIDEFTYHIHGYRSCTKLRRAVHFPKYMWARHSIAKKLGAVNVMIRSISESMKRYQTYQGASVSHVDDGGGTKWVNHISESSLFFSENSLVGIDAAKGKLIGWLLSPEPQRIVVSVVGMGGSGKTTLSANIFKSQTVRKHFASYAWVTISKSYVIEDVFRTMIKEFYKEAETQIPGELYSLTYRELVEKLVEYLHSKRYFVVLDDVWNTSLWREINIALPDGISGSRVVITTRSNNVASFSYGSGSRKHEIELLNEDEAWVLFCNKAFSGSLEECRRRNLELIARKLLERCQGLPLAIASLGSMMSTKRLESEWKQVYNSLNWELNNNLELKVVRSILSLSFSDLPYPLKRCFLYCCMFPVNYRMKRKRLVRMWMAQRFVEPIRGVKAEEVADGYLNELVYRNMLQVILWNPFGRPKVFKMHDVIREIALSISKAERFCDVNGDDDDDDAETAEDHGTRHLCIQKEMRSGTVRRTNLHTLLVCTKHSIELPPSLKLLRALDLEGSGISKLPEILVTLFNLKYLNLSKTEVKELPRDFHRLINLETLNTRHSKVDELPPGMWKLRKLRYLITFRCNYGHDSNWNYVLGTKVSPSICQLKDLQVMDCFNAEAELIKTLGGMTQLTRVSIVMIRREHGRDLCESLNKIKRLRFLSLTSIHEEEPLEIDRLIATASIEKLFLAGKLERVPSWFSTLQNVTYLGLRGSKLQENSIHYLQTLPKLVWLSFYNAYMGTRLCFAEGFENLKMLDIVQMKHLKEVVIEDGAMVGIQKLYIRACRVLESVPRGIENLVNLQELHLSHVSDQLVERIRGEEGVYTSKVKHIPAIKHHFRTEDGSFYVSLSS |
| HMMPanther: PTHR23155:SF234 | 2-926 | PTHR23155:SF234,RPM1 (RESISTANCE TO P. SYRINGAE PV MACULICOLA 1) | ASATVDVGIGLILSLLENETLLLSGVHSEIEKMKKELLIIKSFLEDTHKQDWNGSTTTTTGTTTTTQLFRTFVSNIRDLAYQVEDIIDEFTYHIHGYRSCTKLRRAVHFPKYMWARHSIAKKLGAVNVMIRSISESMKRYQTYQGASVSHVDDGGGTKWVNHISESSLFFSENSLVGIDAAKGKLIGWLLSPEPQRIVVSVVGMGGSGKTTLSANIFKSQTVRKHFASYAWVTISKSYVIEDVFRTMIKEFYKEAETQIPGELYSLTYRELVEKLVEYLHSKRYFVVLDDVWNTSLWREINIALPDGISGSRVVITTRSNNVASFSYGSGSRKHEIELLNEDEAWVLFCNKAFSGSLEECRRRNLELIARKLLERCQGLPLAIASLGSMMSTKRLESEWKQVYNSLNWELNNNLELKVVRSILSLSFSDLPYPLKRCFLYCCMFPVNYRMKRKRLVRMWMAQRFVEPIRGVKAEEVADGYLNELVYRNMLQVILWNPFGRPKVFKMHDVIREIALSISKAERFCDVNGDDDDDDAETAEDHGTRHLCIQKEMRSGTVRRTNLHTLLVCTKHSIELPPSLKLLRALDLEGSGISKLPEILVTLFNLKYLNLSKTEVKELPRDFHRLINLETLNTRHSKVDELPPGMWKLRKLRYLITFRCNYGHDSNWNYVLGTKVSPSICQLKDLQVMDCFNAEAELIKTLGGMTQLTRVSIVMIRREHGRDLCESLNKIKRLRFLSLTSIHEEEPLEIDRLIATASIEKLFLAGKLERVPSWFSTLQNVTYLGLRGSKLQENSIHYLQTLPKLVWLSFYNAYMGTRLCFAEGFENLKMLDIVQMKHLKEVVIEDGAMVGIQKLYIRACRVLESVPRGIENLVNLQELHLSHVSDQLVERIRGEEGVYTSKVKHIPAIKHHFRTEDGSFYVSLSS |
| superfamily: SSF52540 | 159-415 | SSF52540 | KWVNHISESSLFFSENSLVGIDAAKGKLIGWLLSPEPQRIVVSVVGMGGSGKTTLSANIFKSQTVRKHFASYAWVTISKSYVIEDVFRTMIKEFYKEAETQIPGELYSLTYRELVEKLVEYLHSKRYFVVLDDVWNTSLWREINIALPDGISGSRVVITTRSNNVASFSYGSGSRKHEIELLNEDEAWVLFCNKAFSGSLEECRRRNLELIARKLLERCQGLPLAIASLGSMMSTKRLESEWKQVYNSLNWELNNNL |
| HMMPfam: PF00931 IPR002182
|
181-469 | NB-ARC,NBS NB-ARC
|
AAKGKLIGWLLSPEPQRIVVSVVGMGGSGKTTLSANIFKSQTVRKHFASYAWVTISKSYVIEDVFRTMIKEFYKEAETQIPGELYSLTYRELVEKLVEYLHSKRYFVVLDDVWNTSLWREINIALPDGISGSRVVITTRSNNVASFSYGSGSRKHEIELLNEDEAWVLFCNKAFSGSLEECRRRNLELIARKLLERCQGLPLAIASLGSMMSTKRLESEWKQVYNSLNWELNNNLELKVVRSILSLSFSDLPYPLKRCFLYCCMFPVNYRMKRKRLVRMWMAQRFVEPI |
| Gene3D: G3DSA:3.40.50.300 | 198-219 | G3DSA:3.40.50.300 | IVVSVVGMGGSGKTTLSANIFK |
| FPrintScan: PR00364 IPR000767
|
199-214 | DISEASERSIST Disease resistance protein
|
VVSVVGMGGSGKTTLS |
| FPrintScan: PR00364 IPR000767
|
279-293 | DISEASERSIST Disease resistance protein
|
YLHSKRYFVVLDDVW |
| FPrintScan: PR00364 IPR000767
|
377-391 | DISEASERSIST Disease resistance protein
|
CQGLPLAIASLGSMM |
| superfamily: SSF52058 | 506-883 | SSF52058,LRR | KMHDVIREIALSISKAERFCDVNGDDDDDDAETAEDHGTRHLCIQKEMRSGTVRRTNLHTLLVCTKHSIELPPSLKLLRALDLEGSGISKLPEILVTLFNLKYLNLSKTEVKELPRDFHRLINLETLNTRHSKVDELPPGMWKLRKLRYLITFRCNYGHDSNWNYVLGTKVSPSICQLKDLQVMDCFNAEAELIKTLGGMTQLTRVSIVMIRREHGRDLCESLNKIKRLRFLSLTSIHEEEPLEIDRLIATASIEKLFLAGKLERVPSWFSTLQNVTYLGLRGSKLQENSIHYLQTLPKLVWLSFYNAYMGTRLCFAEGFENLKMLDIVQMKHLKEVVIEDGAMVGIQKLYIRACRVLESVPRGIENLVNLQELHLSH |
| Gene3D: G3DSA:3.80.10.10 | 560-732 | G3DSA:3.80.10.10 | RTNLHTLLVCTKHSIELPPSLKLLRALDLEGSGISKLPEILVTLFNLKYLNLSKTEVKELPRDFHRLINLETLNTRHSKVDELPPGMWKLRKLRYLITFRCNYGHDSNWNYVLGTKVSPSICQLKDLQVMDCFNAEAELIKTLGGMTQLTRVSIVMIRREHGRDLCESLNKIK |
| Gene3D: G3DSA:3.80.10.10 | 733-883 | G3DSA:3.80.10.10 | RLRFLSLTSIHEEEPLEIDRLIATASIEKLFLAGKLERVPSWFSTLQNVTYLGLRGSKLQENSIHYLQTLPKLVWLSFYNAYMGTRLCFAEGFENLKMLDIVQMKHLKEVVIEDGAMVGIQKLYIRACRVLESVPRGIENLVNLQELHLSH |
| FPrintScan: PR00364 IPR000767
|
823-839 | DISEASERSIST Disease resistance protein
|
EGFENLKMLDIVQMKHL |
List of References
M R Grant, J M McDowell, A G Sharpe, M de Torres Zabala, D J Lydiate, J L Dangl
Independent deletions of a pathogen-resistance gene in Brassica and Arabidopsis.
Proc. Natl. Acad. Sci. U.S.A.: 1998, 95(26);15843-8
PubMed:9861058
WorldCat.org
(P p)
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