PRGDB00049222 (RPM1)

RPM1
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	4092773 (AF105140)
Gene Class	NL
Domain Type	LRR, NBS, LRR, Others
Gene Species	Brassica napus
	Comment?

Brassica napus chromosome N1 disease resistance gene homolog 9N (RPM1) gene, complete cds.

DNA Sequence

ATGGCTTCAGCTACTGTTGATGTTGGGATAGGACTGATTCTCAGCCTCCTAGAAAACGAGACCTTGTTGCTGTCAGGAGTTCACAGCGAGATCGAGAAGATGAAGAAGGAGTTGCTTATCATAAAGTCCTTTCTTGAGGACACACATAAACAAGATTGGAATGGTTCCACCACCACAACAACGGGAACAACAACAACAACTCAACTCTTTCGAACTTTTGTGTCAAACATAAGAGACTTGGCTTACCAAGTGGAAGACATCATCGACGAATTCACCTATCACATCCATGGTTATCGCAGCTGCACAAAGCTTCGGCGTGCGGTTCATTTCCCCAAGTACATGTGGGCTAGGCACTCCATAGCTAAGAAGCTAGGAGCCGTGAATGTCATGATTCGTTCCATTTCTGAATCCATGAAAAGGTACCAAACCTATCAAGGAGCATCAGTATCGCATGTTGATGATGGTGGTGGTACAAAGTGGGTGAATCACATCAGCGAGTCATCTCTGTTCTTTAGTGAAAACAGTCTTGTAGGGATTGATGCAGCTAAAGGAAAGCTCATTGGATGGCTTCTAAGTCCTGAACCTCAAAGGATAGTTGTCTCGGTGGTCGGAATGGGTGGTTCAGGGAAGACTACACTCTCAGCTAACATCTTCAAGTCCCAAACCGTGCGCAAGCATTTCGCGTCATACGCTTGGGTTACTATCTCTAAATCCTATGTGATTGAAGATGTGTTTAGGACAATGATAAAAGAGTTCTACAAAGAAGCAGAAACGCAGATTCCAGGTGAGTTGTACTCCTTAACTTACAGAGAGCTGGTTGAGAAGCTTGTGGAGTATTTGCATTCCAAGAGGTACTTTGTTGTGCTTGATGATGTGTGGAACACTAGTCTGTGGAGGGAGATAAACATCGCTCTACCAGATGGCATTAGCGGAAGCCGTGTTGTGATAACTACTCGCAGCAATAACGTGGCTTCTTTCTCATATGGCAGTGGGAGTAGAAAGCATGAGATTGAGCTCTTGAACGAAGACGAAGCTTGGGTGCTTTTCTGCAACAAAGCGTTTTCTGGAAGCCTTGAGGAATGTAGGAGGAGGAATCTAGAGCTGATAGCAAGGAAGTTACTTGAGAGATGTCAAGGCCTGCCGTTAGCTATAGCTTCTTTGGGGAGCATGATGTCAACAAAGAGGTTGGAGTCAGAGTGGAAGCAAGTCTACAACTCTTTGAACTGGGAACTTAACAACAATCTTGAGCTCAAGGTTGTTAGAAGCATCTTGTCGCTTAGCTTCAGTGATCTGCCGTATCCTCTTAAACGTTGTTTCTTGTACTGTTGTATGTTCCCTGTGAACTATCGGATGAAAAGGAAGAGGCTGGTTAGGATGTGGATGGCGCAACGGTTTGTGGAACCGATCAGAGGAGTGAAAGCGGAGGAAGTGGCTGATGGTTACTTAAATGAGCTTGTTTACAGAAACATGCTTCAAGTTATCTTGTGGAATCCTTTTGGACGTCCCAAAGTGTTCAAGATGCATGATGTGATAAGGGAGATCGCTCTATCTATATCCAAAGCTGAGAGGTTCTGTGATGTTAATGGTGATGATGATGACGATGATGCAGAAACAGCCGAGGATCACGGTACTCGCCATTTATGCATTCAGAAAGAGATGAGATCAGGTACTGTACGTAGAACAAACCTTCACACTCTTTTGGTTTGCACTAAACACAGCATTGAACTGCCTCCAAGTCTGAAACTTCTAAGAGCCTTAGACCTTGAAGGCTCCGGCATCAGCAAGCTACCTGAGATTTTGGTAACTCTGTTCAATTTAAAGTACTTGAACTTGTCGAAAACCGAAGTGAAGGAACTCCCAAGAGACTTTCATAGACTCATCAACTTGGAGACATTGAACACTAGGCACTCCAAGGTTGATGAGCTTCCTCCAGGGATGTGGAAGCTTCGGAAGCTGCGTTATCTGATTACTTTCCGTTGCAACTATGGACATGATTCCAACTGGAACTATGTTTTAGGCACAAAGGTTTCTCCGAGTATCTGCCAGCTGAAGGATTTGCAAGTCATGGACTGCTTCAACGCAGAAGCTGAGCTTATCAAAACGCTAGGGGGCATGACTCAGCTCACGAGAGTAAGTATTGTCATGATTAGAAGAGAACATGGACGTGACTTATGCGAGTCGCTGAACAAGATCAAAAGACTCAGATTCTTATCCCTAACGTCTATTCATGAAGAGGAACCGTTAGAGATAGATAGACTGATAGCAACTGCAAGTATTGAGAAACTCTTTCTTGCAGGGAAACTAGAAAGAGTACCGAGTTGGTTCAGTACTCTTCAGAACGTTACCTATTTGGGTCTGCGCGGCTCTAAGCTGCAAGAAAACTCCATTCACTACCTCCAAACGCTTCCTAAATTAGTATGGCTTTCATTTTATAATGCATACATGGGGACTAGGTTGTGTTTTGCTGAAGGGTTTGAGAATCTGAAGATGCTAGATATAGTCCAGATGAAACATCTGAAAGAGGTTGTGATTGAAGATGGTGCAATGGTTGGGATACAGAAGCTTTACATCAGAGCTTGTAGAGTGTTGGAGTCGGTACCGAGGGGAATAGAGAATCTTGTGAACCTTCAAGAACTGCATTTGAGTCATGTTTCTGATCAGCTAGTGGAGAGGATTCGTGGGGAAGAGGGTGTATACACGTCCAAGGTTAAACATATTCCTGCCATCAAGCATCATTTCAGAACTGAGGATGGCTCTTTCTATGTGAGCCTCTCATCTTGA

Protein sequences

Name	Description	Sequence
disease resistance gene homolog 9N	disease resistance gene homolog 9N [Brassica napus].	MASATVDVGIGLILSLLENETLLLSGVHSEIEKMKKELLIIKSFLEDTHKQDWNGSTTTTTGTTTTTQLFRTFVSNIRDLAYQVEDIIDEFTYHIHGYRSCTKLRRAVHFPKYMWARHSIAKKLGAVNVMIRSISESMKRYQTYQGASVSHVDDGGGTKWVNHISESSLFFSENSLVGIDAAKGKLIGWLLSPEPQRIVVSVVGMGGSGKTTLSANIFKSQTVRKHFASYAWVTISKSYVIEDVFRTMIKEFYKEAETQIPGELYSLTYRELVEKLVEYLHSKRYFVVLDDVWNTSLWREINIALPDGISGSRVVITTRSNNVASFSYGSGSRKHEIELLNEDEAWVLFCNKAFSGSLEECRRRNLELIARKLLERCQGLPLAIASLGSMMSTKRLESEWKQVYNSLNWELNNNLELKVVRSILSLSFSDLPYPLKRCFLYCCMFPVNYRMKRKRLVRMWMAQRFVEPIRGVKAEEVADGYLNELVYRNMLQVILWNPFGRPKVFKMHDVIREIALSISKAERFCDVNGDDDDDDAETAEDHGTRHLCIQKEMRSGTVRRTNLHTLLVCTKHSIELPPSLKLLRALDLEGSGISKLPEILVTLFNLKYLNLSKTEVKELPRDFHRLINLETLNTRHSKVDELPPGMWKLRKLRYLITFRCNYGHDSNWNYVLGTKVSPSICQLKDLQVMDCFNAEAELIKTLGGMTQLTRVSIVMIRREHGRDLCESLNKIKRLRFLSLTSIHEEEPLEIDRLIATASIEKLFLAGKLERVPSWFSTLQNVTYLGLRGSKLQENSIHYLQTLPKLVWLSFYNAYMGTRLCFAEGFENLKMLDIVQMKHLKEVVIEDGAMVGIQKLYIRACRVLESVPRGIENLVNLQELHLSHVSDQLVERIRGEEGVYTSKVKHIPAIKHHFRTEDGSFYVSLSS

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR23155	2-926	PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	ASATVDVGIGLILSLLENETLLLSGVHSEIEKMKKELLIIKSFLEDTHKQDWNGSTTTTTGTTTTTQLFRTFVSNIRDLAYQVEDIIDEFTYHIHGYRSCTKLRRAVHFPKYMWARHSIAKKLGAVNVMIRSISESMKRYQTYQGASVSHVDDGGGTKWVNHISESSLFFSENSLVGIDAAKGKLIGWLLSPEPQRIVVSVVGMGGSGKTTLSANIFKSQTVRKHFASYAWVTISKSYVIEDVFRTMIKEFYKEAETQIPGELYSLTYRELVEKLVEYLHSKRYFVVLDDVWNTSLWREINIALPDGISGSRVVITTRSNNVASFSYGSGSRKHEIELLNEDEAWVLFCNKAFSGSLEECRRRNLELIARKLLERCQGLPLAIASLGSMMSTKRLESEWKQVYNSLNWELNNNLELKVVRSILSLSFSDLPYPLKRCFLYCCMFPVNYRMKRKRLVRMWMAQRFVEPIRGVKAEEVADGYLNELVYRNMLQVILWNPFGRPKVFKMHDVIREIALSISKAERFCDVNGDDDDDDAETAEDHGTRHLCIQKEMRSGTVRRTNLHTLLVCTKHSIELPPSLKLLRALDLEGSGISKLPEILVTLFNLKYLNLSKTEVKELPRDFHRLINLETLNTRHSKVDELPPGMWKLRKLRYLITFRCNYGHDSNWNYVLGTKVSPSICQLKDLQVMDCFNAEAELIKTLGGMTQLTRVSIVMIRREHGRDLCESLNKIKRLRFLSLTSIHEEEPLEIDRLIATASIEKLFLAGKLERVPSWFSTLQNVTYLGLRGSKLQENSIHYLQTLPKLVWLSFYNAYMGTRLCFAEGFENLKMLDIVQMKHLKEVVIEDGAMVGIQKLYIRACRVLESVPRGIENLVNLQELHLSHVSDQLVERIRGEEGVYTSKVKHIPAIKHHFRTEDGSFYVSLSS
HMMPanther: PTHR23155:SF234	2-926	PTHR23155:SF234,RPM1 (RESISTANCE TO P. SYRINGAE PV MACULICOLA 1)	ASATVDVGIGLILSLLENETLLLSGVHSEIEKMKKELLIIKSFLEDTHKQDWNGSTTTTTGTTTTTQLFRTFVSNIRDLAYQVEDIIDEFTYHIHGYRSCTKLRRAVHFPKYMWARHSIAKKLGAVNVMIRSISESMKRYQTYQGASVSHVDDGGGTKWVNHISESSLFFSENSLVGIDAAKGKLIGWLLSPEPQRIVVSVVGMGGSGKTTLSANIFKSQTVRKHFASYAWVTISKSYVIEDVFRTMIKEFYKEAETQIPGELYSLTYRELVEKLVEYLHSKRYFVVLDDVWNTSLWREINIALPDGISGSRVVITTRSNNVASFSYGSGSRKHEIELLNEDEAWVLFCNKAFSGSLEECRRRNLELIARKLLERCQGLPLAIASLGSMMSTKRLESEWKQVYNSLNWELNNNLELKVVRSILSLSFSDLPYPLKRCFLYCCMFPVNYRMKRKRLVRMWMAQRFVEPIRGVKAEEVADGYLNELVYRNMLQVILWNPFGRPKVFKMHDVIREIALSISKAERFCDVNGDDDDDDAETAEDHGTRHLCIQKEMRSGTVRRTNLHTLLVCTKHSIELPPSLKLLRALDLEGSGISKLPEILVTLFNLKYLNLSKTEVKELPRDFHRLINLETLNTRHSKVDELPPGMWKLRKLRYLITFRCNYGHDSNWNYVLGTKVSPSICQLKDLQVMDCFNAEAELIKTLGGMTQLTRVSIVMIRREHGRDLCESLNKIKRLRFLSLTSIHEEEPLEIDRLIATASIEKLFLAGKLERVPSWFSTLQNVTYLGLRGSKLQENSIHYLQTLPKLVWLSFYNAYMGTRLCFAEGFENLKMLDIVQMKHLKEVVIEDGAMVGIQKLYIRACRVLESVPRGIENLVNLQELHLSHVSDQLVERIRGEEGVYTSKVKHIPAIKHHFRTEDGSFYVSLSS
superfamily: SSF52540	159-415	SSF52540	KWVNHISESSLFFSENSLVGIDAAKGKLIGWLLSPEPQRIVVSVVGMGGSGKTTLSANIFKSQTVRKHFASYAWVTISKSYVIEDVFRTMIKEFYKEAETQIPGELYSLTYRELVEKLVEYLHSKRYFVVLDDVWNTSLWREINIALPDGISGSRVVITTRSNNVASFSYGSGSRKHEIELLNEDEAWVLFCNKAFSGSLEECRRRNLELIARKLLERCQGLPLAIASLGSMMSTKRLESEWKQVYNSLNWELNNNL
HMMPfam: PF00931 IPR002182	181-469	NB-ARC,NBS NB-ARC	AAKGKLIGWLLSPEPQRIVVSVVGMGGSGKTTLSANIFKSQTVRKHFASYAWVTISKSYVIEDVFRTMIKEFYKEAETQIPGELYSLTYRELVEKLVEYLHSKRYFVVLDDVWNTSLWREINIALPDGISGSRVVITTRSNNVASFSYGSGSRKHEIELLNEDEAWVLFCNKAFSGSLEECRRRNLELIARKLLERCQGLPLAIASLGSMMSTKRLESEWKQVYNSLNWELNNNLELKVVRSILSLSFSDLPYPLKRCFLYCCMFPVNYRMKRKRLVRMWMAQRFVEPI
Gene3D: G3DSA:3.40.50.300	198-219	G3DSA:3.40.50.300	IVVSVVGMGGSGKTTLSANIFK
FPrintScan: PR00364 IPR000767	199-214	DISEASERSIST Disease resistance protein	VVSVVGMGGSGKTTLS
FPrintScan: PR00364 IPR000767	279-293	DISEASERSIST Disease resistance protein	YLHSKRYFVVLDDVW
FPrintScan: PR00364 IPR000767	377-391	DISEASERSIST Disease resistance protein	CQGLPLAIASLGSMM
superfamily: SSF52058	506-883	SSF52058,LRR	KMHDVIREIALSISKAERFCDVNGDDDDDDAETAEDHGTRHLCIQKEMRSGTVRRTNLHTLLVCTKHSIELPPSLKLLRALDLEGSGISKLPEILVTLFNLKYLNLSKTEVKELPRDFHRLINLETLNTRHSKVDELPPGMWKLRKLRYLITFRCNYGHDSNWNYVLGTKVSPSICQLKDLQVMDCFNAEAELIKTLGGMTQLTRVSIVMIRREHGRDLCESLNKIKRLRFLSLTSIHEEEPLEIDRLIATASIEKLFLAGKLERVPSWFSTLQNVTYLGLRGSKLQENSIHYLQTLPKLVWLSFYNAYMGTRLCFAEGFENLKMLDIVQMKHLKEVVIEDGAMVGIQKLYIRACRVLESVPRGIENLVNLQELHLSH
Gene3D: G3DSA:3.80.10.10	560-732	G3DSA:3.80.10.10	RTNLHTLLVCTKHSIELPPSLKLLRALDLEGSGISKLPEILVTLFNLKYLNLSKTEVKELPRDFHRLINLETLNTRHSKVDELPPGMWKLRKLRYLITFRCNYGHDSNWNYVLGTKVSPSICQLKDLQVMDCFNAEAELIKTLGGMTQLTRVSIVMIRREHGRDLCESLNKIK
Gene3D: G3DSA:3.80.10.10	733-883	G3DSA:3.80.10.10	RLRFLSLTSIHEEEPLEIDRLIATASIEKLFLAGKLERVPSWFSTLQNVTYLGLRGSKLQENSIHYLQTLPKLVWLSFYNAYMGTRLCFAEGFENLKMLDIVQMKHLKEVVIEDGAMVGIQKLYIRACRVLESVPRGIENLVNLQELHLSH
FPrintScan: PR00364 IPR000767	823-839	DISEASERSIST Disease resistance protein	EGFENLKMLDIVQMKHL

List of Contributions

There has not been any contribution yet.

Add a Contribution

Analyses

Blast

Blast matches against Reference R-Genes. Show