PRGDB00049239 (putative disease resistance protein)

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putative disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 3075475 (AF039383)
Gene Class CNL
Domain Type NBS, LRR
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana clone L4 putative disease resistance protein gene, partial cds.

DNA Sequence

GTTGCTAGACAAGTCTTTAACCACGAGGATGTGAAACATCATTTTGATGGACTCGCATGGGTGTGTGTTTCACAAGATTTTACCCGGAAGAATGTGTGGCAAGCTATCTTTAGGAATCTCAGACCAAACGAAGAAGAAAAGAAAATCTTGGAAATGACAGAAGCTACACTCCTGGATAAACTCTCCCGGTTGTTGGAAACATCCAGATCATTAATTGTGATTGATGACATATGGAAACAAGAAGATTGGGACCTAATCAAGCCAATATTTCCACCCAAAAAAGGTTGGACTGTGCTACTTACTTCTAGAGATGAGAGTATTGCAGTACGTGGTGATACGGCATATATCAACTTTAAAGCAGATTACCTAACTATTGACGATAGTTGGACACTTTTTCAAAGGATAGCATTTCCTAGGAAAGACACAGCAGAATTTAAGGTTGATGTGGAAATGGAGGAGATGGGTAAGAAAATGATTAAACATTGTGGA


Protein sequences

Name Description Sequence
putative disease resistance protein putative disease resistance protein [Arabidopsis thaliana].

VARQVFNHEDVKHHFDGLAWVCVSQDFTRKNVWQAIFRNLRPNEEEKKILEMTEATLLDKLSRLLETSRSLIVIDDIWKQEDWDLIKPIFPPKKGWTVLLTSRDESIAVRGDTAYINFKADYLTIDDSWTLFQRIAFPRKDTAEFKVDVEMEEMGKKMIKHCG


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017:SF125
1-163 PTHR11017:SF125,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

VARQVFNHEDVKHHFDGLAWVCVSQDFTRKNVWQAIFRNLRPNEEEKKILEMTEATLLDKLSRLLETSRSLIVIDDIWKQEDWDLIKPIFPPKKGWTVLLTSRDESIAVRGDTAYINFKADYLTIDDSWTLFQRIAFPRKDTAEFKVDVEMEEMGKKMIKHCG

superfamily: SSF52540
1-163 SSF52540

VARQVFNHEDVKHHFDGLAWVCVSQDFTRKNVWQAIFRNLRPNEEEKKILEMTEATLLDKLSRLLETSRSLIVIDDIWKQEDWDLIKPIFPPKKGWTVLLTSRDESIAVRGDTAYINFKADYLTIDDSWTLFQRIAFPRKDTAEFKVDVEMEEMGKKMIKHCG

HMMPanther: PTHR11017
1-163 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

VARQVFNHEDVKHHFDGLAWVCVSQDFTRKNVWQAIFRNLRPNEEEKKILEMTEATLLDKLSRLLETSRSLIVIDDIWKQEDWDLIKPIFPPKKGWTVLLTSRDESIAVRGDTAYINFKADYLTIDDSWTLFQRIAFPRKDTAEFKVDVEMEEMGKKMIKHCG

HMMPfam: PF00931
IPR002182
2-162 NB-ARC,NBS
NB-ARC

ARQVFNHEDVKHHFDGLAWVCVSQDFTRKNVWQAIFRNLRPNEEEKKILEMTEATLLDKLSRLLETSRSLIVIDDIWKQEDWDLIKPIFPPKKGWTVLLTSRDESIAVRGDTAYINFKADYLTIDDSWTLFQRIAFPRKDTAEFKVDVEMEEMGKKMIKHC


List of References

M G Aarts, B te Lintel Hekkert, E B Holub, J L Beynon, W J Stiekema, A Pereira
Identification of R-gene homologous DNA fragments genetically linked to disease resistance loci in Arabidopsis thaliana.
Mol. Plant Microbe Interact.: 1998, 11(4);251-8
PubMed:9530866 WorldCat.org DOI (P p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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