PRGDB00049243 (putative disease resistance protein)

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putative disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 3075467 (AF039379)
Gene Class NL
Domain Type NBS, LRR
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana clone C3 putative disease resistance protein gene, partial cds.

DNA Sequence

CTACTCCGAAGATCCAACAATAAGTTTTCTAAAATAGATGACAGTATTGATGTTGTGATATGGGTTGTTGTGCCTAGAAGTTCAACAGTCCGTAAGATACNAAGAGACATAGCAGNNNAGGTAGGCCTTGGGGGAATGGAGTGGAGCGAGAAAAACGATAACCAGATAGCCGTTGACATCCACAATGTCCTTAGGAGACGAAAGTTTGTTTTATCGTTGGATGACATATGGGAGAAAGTGAATTTAAAAGCGGTTGGAGTCCCGTATCCAAGCAAAGATAACGGATGCAAGGTAGCATTCACTACTCGTTCTCGAGATGTGTGTGGGCGCATGGGGGTTGATGATCCGATGGAAGTTAGCTGTCTACAACCCGAAGAATCTTGGGATTTGTTTCAAATGAAGGTTGGGAAAAATACACTGGGAAGTCACCCAGACATTCCCGGACTTGCTAGAAAAGTCGCTAGGAAATG


Protein sequences

Name Description Sequence
putative disease resistance protein putative disease resistance protein [Arabidopsis thaliana].

LLRRSNNKFSKIDDSIDVVIWVVVPRSSTVRKIXRDIAXXVGLGGMEWSEKNDNQIAVDIHNVLRRRKFVLSLDDIWEKVNLKAVGVPYPSKDNGCKVAFTTRSRDVCGRMGVDDPMEVSCLQPEESWDLFQMKVGKNTLGSHPDIPGLARKVARK


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155
1-95 FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

LLRRSNNKFSKIDDSIDVVIWVVVPRSSTVRKIXRDIAXXVGLGGMEWSEKNDNQIAVDIHNVLRRRKFVLSLDDIWEKVNLKAVGVPYPSKDNG

HMMPanther: PTHR23155:SF119
1-95 RFL1 (RPS5-LIKE 1); ATP BINDING / PROTEIN BINDING,RFL1 (RPS5-LIKE 1)

LLRRSNNKFSKIDDSIDVVIWVVVPRSSTVRKIXRDIAXXVGLGGMEWSEKNDNQIAVDIHNVLRRRKFVLSLDDIWEKVNLKAVGVPYPSKDNG

HMMPfam: PF00931
IPR002182
5-155 NB-ARC,NBS
NB-ARC

SNNKFSKIDDSIDVVIWVVVPRSSTVRKIXRDIAXXVGLGGMEWSEKNDNQIAVDIHNVLRRRKFVLSLDDIWEKVNLKAVGVPYPSKDNGCKVAFTTRSRDVCGRMGVDDPMEVSCLQPEESWDLFQMKVGKNTLGSHPDIPGLARKVAR

Seg: seg
12-30 seg

IDDSIDVVIWVVVPRSSTV

superfamily: SSF52540
19-154 P-loop containing nucleoside triphosphate hydrolases

VIWVVVPRSSTVRKIXRDIAXXVGLGGMEWSEKNDNQIAVDIHNVLRRRKFVLSLDDIWEKVNLKAVGVPYPSKDNGCKVAFTTRSRDVCGRMGVDDPMEVSCLQPEESWDLFQMKVGKNTLGSHPDIPGLARKVA


List of References

M G Aarts, B te Lintel Hekkert, E B Holub, J L Beynon, W J Stiekema, A Pereira
Identification of R-gene homologous DNA fragments genetically linked to disease resistance loci in Arabidopsis thaliana.
Mol. Plant Microbe Interact.: 1998, 11(4);251-8
PubMed:9530866 WorldCat.org DOI (P p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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