PRGDB00049243 (putative disease resistance protein)

putative disease resistance protein
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	3075467 (AF039379)
Gene Class	NL
Domain Type	NBS, LRR
Gene Species	Arabidopsis thaliana
	Comment?

Arabidopsis thaliana clone C3 putative disease resistance protein gene, partial cds.

DNA Sequence

CTACTCCGAAGATCCAACAATAAGTTTTCTAAAATAGATGACAGTATTGATGTTGTGATATGGGTTGTTGTGCCTAGAAGTTCAACAGTCCGTAAGATACNAAGAGACATAGCAGNNNAGGTAGGCCTTGGGGGAATGGAGTGGAGCGAGAAAAACGATAACCAGATAGCCGTTGACATCCACAATGTCCTTAGGAGACGAAAGTTTGTTTTATCGTTGGATGACATATGGGAGAAAGTGAATTTAAAAGCGGTTGGAGTCCCGTATCCAAGCAAAGATAACGGATGCAAGGTAGCATTCACTACTCGTTCTCGAGATGTGTGTGGGCGCATGGGGGTTGATGATCCGATGGAAGTTAGCTGTCTACAACCCGAAGAATCTTGGGATTTGTTTCAAATGAAGGTTGGGAAAAATACACTGGGAAGTCACCCAGACATTCCCGGACTTGCTAGAAAAGTCGCTAGGAAATG

Protein sequences

Name	Description	Sequence
putative disease resistance protein	putative disease resistance protein [Arabidopsis thaliana].	LLRRSNNKFSKIDDSIDVVIWVVVPRSSTVRKIXRDIAXXVGLGGMEWSEKNDNQIAVDIHNVLRRRKFVLSLDDIWEKVNLKAVGVPYPSKDNGCKVAFTTRSRDVCGRMGVDDPMEVSCLQPEESWDLFQMKVGKNTLGSHPDIPGLARKVARK

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR23155	1-95	FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	LLRRSNNKFSKIDDSIDVVIWVVVPRSSTVRKIXRDIAXXVGLGGMEWSEKNDNQIAVDIHNVLRRRKFVLSLDDIWEKVNLKAVGVPYPSKDNG
HMMPanther: PTHR23155:SF119	1-95	RFL1 (RPS5-LIKE 1); ATP BINDING / PROTEIN BINDING,RFL1 (RPS5-LIKE 1)	LLRRSNNKFSKIDDSIDVVIWVVVPRSSTVRKIXRDIAXXVGLGGMEWSEKNDNQIAVDIHNVLRRRKFVLSLDDIWEKVNLKAVGVPYPSKDNG
HMMPfam: PF00931 IPR002182	5-155	NB-ARC,NBS NB-ARC	SNNKFSKIDDSIDVVIWVVVPRSSTVRKIXRDIAXXVGLGGMEWSEKNDNQIAVDIHNVLRRRKFVLSLDDIWEKVNLKAVGVPYPSKDNGCKVAFTTRSRDVCGRMGVDDPMEVSCLQPEESWDLFQMKVGKNTLGSHPDIPGLARKVAR
Seg: seg	12-30	seg	IDDSIDVVIWVVVPRSSTV
superfamily: SSF52540	19-154	P-loop containing nucleoside triphosphate hydrolases	VIWVVVPRSSTVRKIXRDIAXXVGLGGMEWSEKNDNQIAVDIHNVLRRRKFVLSLDDIWEKVNLKAVGVPYPSKDNGCKVAFTTRSRDVCGRMGVDDPMEVSCLQPEESWDLFQMKVGKNTLGSHPDIPGLARKVA

List of References

M G Aarts, B te Lintel Hekkert, E B Holub, J L Beynon, W J Stiekema, A Pereira
Identification of R-gene homologous DNA fragments genetically linked to disease resistance loci in Arabidopsis thaliana.
Mol. Plant Microbe Interact.: 1998, 11(4);251-8
PubMed:9530866 WorldCat.org DOI (P p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show