PRGDB00049275 (VRP1-2)

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VRP1-2
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 189096589 (EU669439)
Gene Class CNL
Domain Type LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, LRR, NBS, RPW8, Others
Gene Species Vitis hybrid cultivar

Comment?

Vitis hybrid cultivar Regent VRP1-1, VRP1-2, and VRP1-3 genes, complete cds.

DNA Sequence

ATGGAAATTATTGGACAAGCCGTTCTGGGAGAAGTCACTGGAGAATTGATAAAACCCATTTTCGATGGAGTAAATAAGGCAGCTTCGTTCGATGAGATCTTAAAACAAGTCAGATCCATTCTAAAACTCATAGGGCCGACCGTCCATCAGATCAAACAATTGAGCGGAGAGAGAGATCGTCCAAAGGGGGAGAGCGAGAAGCAGCTAATACAGCTGTATGAAGAAGGCGAGAAGCTTATTCAAAAATACTATAGGGCCCATTGGCTGATCAATAAATGGAAATACGAAGGTAAGGTTAATGCCTTTTACAAGTCGCTTCTTCTCTTCTTCCAGTTTGGTATGCCGCTGGAACAATTAAAGACCAACATGGAGAGTTTGGTCCTTCGTCAATCTCAATTGAAATCTGGAGCTGGTGAGGTGTCTGGTCAAATTGGATTTTTGGGTTCGGGAGGTTGCTATGCCCGTAAATCCCCTGATTTTACGGTGGGACTGGATGTGCCCCTGAGAGAAGTGAAAGAGCTGCTGTTCAAAGAATCTGTGGTTGTGGTGTCGGCTCCTGGAGGATGTGGGAAGACCACGCTTGTTCAAAAACTCTGCCAAGACCCGGATGTTAAAGGAAAATTTAAGGACAACATCTTCTTTGTCACCGTATCTAAGGTGCCCAACATCAAACTCATGGTACGGAAACTATTTGAACATAATCATAGCCGGGTGCCAGAGTTTCAAAATGATCAAGATGCGATCATTCAGTTGGAACAACTGCTGAAAAAACAAGCAGAAAAAGCTCCTGTACTGTTGGTCCTCGATGATGTTTGGGGTGGCCCTGATATTAGGGTTGAACCTGAATTCCCTCTTCAGAAGTTTGAGTTTAAAATACCGGAATGCAGGATTCTGGTTACATCAAGATACAAATTTCCAGGCTTTGGCTGTGCCTACAAACTGGACTTGTTGCATGGTGAAGAAGCCATGAAACTTTTTCGGCACTCAGCATTCCCCACAGATGGGGATTTCACGCTGGATGAAGATTTTGATGAAGATCTTGTGAAGGAGATTGTGAAAAGATGCGGTGGATTCCCTCTGGTCCTCCAAGTTGTAGCCCGATCACTCTGTGGGCTACCTGTAGAGATCTGGAAAAGCAGACTGCTGGAATGGTCGGAAGGTCAATCCATTTTGGAATCTGGGGAAGGTCTTCTTGATTGCCTCCAAAGTAGCTTAGCTTCCTTGAATGATAAGCTGAAGGACTGCTTTATGGACCTGGGCTCGTTTCCTGAGGATAAAAAAATACCTGTCACGGCTCTTATAGATATGTGGGCAGAATTGTACAAACTCGATAAAAATGGCCTGCATGCTATTTCCAGACTTATTAAACTCTCCTTACAGAATCTGCTTAATCTGGTAGTCACAAGGAAAGGCACAGCAGAGGTTGAAGGCTGCTATGACGACGCCTTTGTCTTGCAACATGATCTTCTGAGAGAACTGGCCATTCGTCAGAGCAGCCAGGAGCCCATGGAAGAGAGGAAAAGACTAATCTTGGACTTGAGTGGAAACAAGCTCCCTGATTGGTGGACAGAAGAAAAACAACCCTGCATCAAGGCTCGCCTTCTGTCTATCTCCACAGACGAAATGTTCTCCTCAAGCTGGTGCGACATGCAAGCACCTGAAGTGGAGGTCCTGATACTCAACTTTCAGACAAGGGAAAGCAACTACACACTGCCAGAGTTCATGAAGCGAATGGATAAGTTGAAGGTCTTGGTATTAACAAATTATGGTTTCTCCATTCCTGAACTGACTAATTTTTCAGTCCTCGGTTCTTTATCCAGTCTTAAGAGAATCAGGTTAGAGCGGGTTTCAATCCCAGCCCTCTGCAACACCATGGTAGAGTTAAAGAATTTGGAGAAAATAACCTTGGTTATGTGTAAGATCAATCAGGCTTTTAACTGCAGTGCCATCCAGATGCCTGTTATGTTGCCTAATCTTAAGGAAATAAATATTGATTCCTGCAATGACTTGGTGGGGTTACCTGAGTGGCTCTGTGATTTAGTACAGCTAAGGAAGCTCAGCATCTCCAACTGCCATAAGCCATCTACACTGCCAGAAGGGATGGGGAGGCTGGGGAATCTGGAGGTGCTGAGGCTTCATGCCTGCACAAAACTAGTGGGATTGCCAGACTCAATTGCAAGCCTCCACAACTTGACTTTTCTTGATATAAGTGGTTGTTTTCGAATGAGGGAACTGCCAAAACAAATGGGTGAGTTGTGCAGATTGAGAAAGCTCTACATGAGAAGGTGCTCAAGACTGAGAGAGTTGCCACCATCAATCATGCGTATCAAGCAGTTGAAAGTAATCTGTGACACAGAAAAGGCCCATCTGTGGGAAGATCACAATTTCACCAATTTGATGATTGACGAGACAACTGACTTAGATTGGCTTGTTTGA


Protein sequences

Name Description Sequence
VRP1-2 VRP1-2 [Vitis hybrid cultivar].

MEIIGQAVLGEVTGELIKPIFDGVNKAASFDEILKQVRSILKLIGPTVHQIKQLSGERDRPKGESEKQLIQLYEEGEKLIQKYYRAHWLINKWKYEGKVNAFYKSLLLFFQFGMPLEQLKTNMESLVLRQSQLKSGAGEVSGQIGFLGSGGCYARKSPDFTVGLDVPLREVKELLFKESVVVVSAPGGCGKTTLVQKLCQDPDVKGKFKDNIFFVTVSKVPNIKLMVRKLFEHNHSRVPEFQNDQDAIIQLEQLLKKQAEKAPVLLVLDDVWGGPDIRVEPEFPLQKFEFKIPECRILVTSRYKFPGFGCAYKLDLLHGEEAMKLFRHSAFPTDGDFTLDEDFDEDLVKEIVKRCGGFPLVLQVVARSLCGLPVEIWKSRLLEWSEGQSILESGEGLLDCLQSSLASLNDKLKDCFMDLGSFPEDKKIPVTALIDMWAELYKLDKNGLHAISRLIKLSLQNLLNLVVTRKGTAEVEGCYDDAFVLQHDLLRELAIRQSSQEPMEERKRLILDLSGNKLPDWWTEEKQPCIKARLLSISTDEMFSSSWCDMQAPEVEVLILNFQTRESNYTLPEFMKRMDKLKVLVLTNYGFSIPELTNFSVLGSLSSLKRIRLERVSIPALCNTMVELKNLEKITLVMCKINQAFNCSAIQMPVMLPNLKEINIDSCNDLVGLPEWLCDLVQLRKLSISNCHKPSTLPEGMGRLGNLEVLRLHACTKLVGLPDSIASLHNLTFLDISGCFRMRELPKQMGELCRLRKLYMRRCSRLRELPPSIMRIKQLKVICDTEKAHLWEDHNFTNLMIDETTDLDWLV

Domains

Domain Start-End Description Sequence

ProfileScan: PS51153
IPR008808
1-148 RPW8
Powdery mildew resistance protein, RPW8 domain

MEIIGQAVLGEVTGELIKPIFDGVNKAASFDEILKQVRSILKLIGPTVHQIKQLSGERDRPKGESEKQLIQLYEEGEKLIQKYYRAHWLINKWKYEGKVNAFYKSLLLFFQFGMPLEQLKTNMESLVLRQSQLKSGAGEVSGQIGFLG

HMMPfam: PF05659
IPR008808
2-122 RPW8
Powdery mildew resistance protein, RPW8 domain

EIIGQAVLGEVTGELIKPIFDGVNKAASFDEILKQVRSILKLIGPTVHQIKQLSGERDRPKGESEKQLIQLYEEGEKLIQKYYRAHWLINKWKYEGKVNAFYKSLLLFFQFGMPLEQLKTN

superfamily: SSF52540
157-383 SSF52540

SPDFTVGLDVPLREVKELLFKESVVVVSAPGGCGKTTLVQKLCQDPDVKGKFKDNIFFVTVSKVPNIKLMVRKLFEHNHSRVPEFQNDQDAIIQLEQLLKKQAEKAPVLLVLDDVWGGPDIRVEPEFPLQKFEFKIPECRILVTSRYKFPGFGCAYKLDLLHGEEAMKLFRHSAFPTDGDFTLDEDFDEDLVKEIVKRCGGFPLVLQVVARSLCGLPVEIWKSRLLE

HMMPanther: PTHR23155:SF239
162-782 PTHR23155:SF239,DISEASE RESISTANCE PROTEIN (CC-NBS-LRR CLASS)

VGLDVPLREVKELLFKESVVVVSAPGGCGKTTLVQKLCQDPDVKGKFKDNIFFVTVSKVPNIKLMVRKLFEHNHSRVPEFQNDQDAIIQLEQLLKKQAEKAPVLLVLDDVWGGPDIRVEPEFPLQKFEFKIPECRILVTSRYKFPGFGCAYKLDLLHGEEAMKLFRHSAFPTDGDFTLDEDFDEDLVKEIVKRCGGFPLVLQVVARSLCGLPVEIWKSRLLEWSEGQSILESGEGLLDCLQSSLASLNDKLKDCFMDLGSFPEDKKIPVTALIDMWAELYKLDKNGLHAISRLIKLSLQNLLNLVVTRKGTAEVEGCYDDAFVLQHDLLRELAIRQSSQEPMEERKRLILDLSGNKLPDWWTEEKQPCIKARLLSISTDEMFSSSWCDMQAPEVEVLILNFQTRESNYTLPEFMKRMDKLKVLVLTNYGFSIPELTNFSVLGSLSSLKRIRLERVSIPALCNTMVELKNLEKITLVMCKINQAFNCSAIQMPVMLPNLKEINIDSCNDLVGLPEWLCDLVQLRKLSISNCHKPSTLPEGMGRLGNLEVLRLHACTKLVGLPDSIASLHNLTFLDISGCFRMRELPKQMGELCRLRKLYMRRCSRLRELPPSIMRIKQLKVI

HMMPanther: PTHR23155
162-782 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

VGLDVPLREVKELLFKESVVVVSAPGGCGKTTLVQKLCQDPDVKGKFKDNIFFVTVSKVPNIKLMVRKLFEHNHSRVPEFQNDQDAIIQLEQLLKKQAEKAPVLLVLDDVWGGPDIRVEPEFPLQKFEFKIPECRILVTSRYKFPGFGCAYKLDLLHGEEAMKLFRHSAFPTDGDFTLDEDFDEDLVKEIVKRCGGFPLVLQVVARSLCGLPVEIWKSRLLEWSEGQSILESGEGLLDCLQSSLASLNDKLKDCFMDLGSFPEDKKIPVTALIDMWAELYKLDKNGLHAISRLIKLSLQNLLNLVVTRKGTAEVEGCYDDAFVLQHDLLRELAIRQSSQEPMEERKRLILDLSGNKLPDWWTEEKQPCIKARLLSISTDEMFSSSWCDMQAPEVEVLILNFQTRESNYTLPEFMKRMDKLKVLVLTNYGFSIPELTNFSVLGSLSSLKRIRLERVSIPALCNTMVELKNLEKITLVMCKINQAFNCSAIQMPVMLPNLKEINIDSCNDLVGLPEWLCDLVQLRKLSISNCHKPSTLPEGMGRLGNLEVLRLHACTKLVGLPDSIASLHNLTFLDISGCFRMRELPKQMGELCRLRKLYMRRCSRLRELPPSIMRIKQLKVI

Gene3D: G3DSA:3.40.50.300
164-272 G3DSA:3.40.50.300

LDVPLREVKELLFKESVVVVSAPGGCGKTTLVQKLCQDPDVKGKFKDNIFFVTVSKVPNIKLMVRKLFEHNHSRVPEFQNDQDAIIQLEQLLKKQAEKAPVLLVLDDVW

HMMPfam: PF00931
IPR002182
170-439 NB-ARC,NBS
NB-ARC

EVKELLFKESVVVVSAPGGCGKTTLVQKLCQDPDVKGKFKDNIFFVTVSKVPNIKLMVRKLFEHNHSRVPEFQNDQDAIIQLEQLLKKQAEKAPVLLVLDDVWGGPDIRVEPEFPLQKFEFKIPECRILVTSRYKFPGFGCAYKLDLLHGEEAMKLFRHSAFPTDGDFTLDEDFDEDLVKEIVKRCGGFPLVLQVVARSLCGLPVEIWKSRLLEWSEGQSILESGEGLLDCLQSSLASLNDKLKDCFMDLGSFPEDKKIPVTALIDMWAE

HMMSmart: SM00382
IPR003593
177-335 AAA,NBS
AAA+ ATPase domain

KESVVVVSAPGGCGKTTLVQKLCQDPDVKGKFKDNIFFVTVSKVPNIKLMVRKLFEHNHSRVPEFQNDQDAIIQLEQLLKKQAEKAPVLLVLDDVWGGPDIRVEPEFPLQKFEFKIPECRILVTSRYKFPGFGCAYKLDLLHGEEAMKLFRHSAFPTDG

FPrintScan: PR00364
IPR000767
180-195 DISEASERSIST
Disease resistance protein

VVVVSAPGGCGKTTLV

FPrintScan: PR00364
IPR000767
258-272 DISEASERSIST
Disease resistance protein

QAEKAPVLLVLDDVW

FPrintScan: PR00364
IPR000767
355-369 DISEASERSIST
Disease resistance protein

CGGFPLVLQVVARSL

superfamily: SSF52047
506-782 SSF52047,LRR

RKRLILDLSGNKLPDWWTEEKQPCIKARLLSISTDEMFSSSWCDMQAPEVEVLILNFQTRESNYTLPEFMKRMDKLKVLVLTNYGFSIPELTNFSVLGSLSSLKRIRLERVSIPALCNTMVELKNLEKITLVMCKINQAFNCSAIQMPVMLPNLKEINIDSCNDLVGLPEWLCDLVQLRKLSISNCHKPSTLPEGMGRLGNLEVLRLHACTKLVGLPDSIASLHNLTFLDISGCFRMRELPKQMGELCRLRKLYMRRCSRLRELPPSIMRIKQLKVI

Gene3D: G3DSA:3.80.10.10
511-522 G3DSA:3.80.10.10

LDLSGNKLPDWW

Gene3D: G3DSA:3.80.10.10
570-781 G3DSA:3.80.10.10

TLPEFMKRMDKLKVLVLTNYGFSIPELTNFSVLGSLSSLKRIRLERVSIPALCNTMVELKNLEKITLVMCKINQAFNCSAIQMPVMLPNLKEINIDSCNDLVGLPEWLCDLVQLRKLSISNCHKPSTLPEGMGRLGNLEVLRLHACTKLVGLPDSIASLHNLTFLDISGCFRMRELPKQMGELCRLRKLYMRRCSRLRELPPSIMRIKQLKV

FPrintScan: PR00364
IPR000767
726-742 DISEASERSIST
Disease resistance protein

ASLHNLTFLDISGCFRM

HMMPfam: PF13504
729-746 LRR_7,Leucine rich repeat

HNLTFLDISGCFRMRELP






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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