PRGDB00049290 (I2)

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I2
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 77641470 (DQ206218)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Nicotiana tabacum

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Nicotiana tabacum clone 1850 I2 (I2) gene, partial cds.

DNA Sequence

ACTAGAAGACTTTCAACTTCTGTGGTTGATGAATCTGGCATCTTTGGTAGGCAGAATGAAATAAATATATTAGTTGACCGTTTATTGTCTGATGATGCAAAAGAAAAAAAGTTGACTGTAATTCCTATTATTGGAATGGCGGGTGTTGGCAAGACAACACTTGCTAAAGTTGTTTACAATGATGAGAAGGTGAAACAACATTTTAAGTTGGAATCTTGGATCTGTGTGTCTGAACCATATGATGTTTTTAGAATAACAAAAGGGTTACTTCAAGAAATTGGTTCATCCGACTTGATGGTTGACAACAATCTTAATCAGCTTCAGATCAAATTGATGGAAAGCTTAAAGGGGAAAAAGTTCCTTATTGTTTTAGATGATGTTTGGAATGACAACTACAATGATTGGTATGACTTGAGAAATCCTTTTGCACAAGGAGAAAATGGAAGTATGATCATTGTGACGACACGTAAGGAGAGTGTTGCCTTGATGATGGGTAGTGGGCTAATTAACGTGGGAACTCTGTCTACTGAAGTCTCTTGGCCTTTATTCAAAAGACATGCATTTGAAAATAGGGATCCTAAGGAAAATCCAGAACTTGAAGAGATAGGAAAACAAATTGCAATTAAGTGCAAAGGATTGCCTTTAGCACTAAAGACACTTGCTGGTTTGTTGCGCTCCAAATCAGAGGTTGAAGAGTGGAGACGTGTTTTGAGAAGCGAAATATGGGA


Protein sequences

Name Description Sequence
I2 I2 [Nicotiana tabacum].

TRRLSTSVVDESGIFGRQNEINILVDRLLSDDAKEKKLTVIPIIGMAGVGKTTLAKVVYNDEKVKQHFKLESWICVSEPYDVFRITKGLLQEIGSSDLMVDNNLNQLQIKLMESLKGKKFLIVLDDVWNDNYNDWYDLRNPFAQGENGSMIIVTTRKESVALMMGSGLINVGTLSTEVSWPLFKRHAFENRDPKENPELEEIGKQIAIKCKGLPLALKTLAGLLRSKSEVEEWRRVLRSEIW

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017
2-239 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

RRLSTSVVDESGIFGRQNEINILVDRLLSDDAKEKKLTVIPIIGMAGVGKTTLAKVVYNDEKVKQHFKLESWICVSEPYDVFRITKGLLQEIGSSDLMVDNNLNQLQIKLMESLKGKKFLIVLDDVWNDNYNDWYDLRNPFAQGENGSMIIVTTRKESVALMMGSGLINVGTLSTEVSWPLFKRHAFENRDPKENPELEEIGKQIAIKCKGLPLALKTLAGLLRSKSEVEEWRRVLRS

HMMPanther: PTHR11017:SF20
2-239 PTHR11017:SF20,SUBFAMILY NOT NAMED

RRLSTSVVDESGIFGRQNEINILVDRLLSDDAKEKKLTVIPIIGMAGVGKTTLAKVVYNDEKVKQHFKLESWICVSEPYDVFRITKGLLQEIGSSDLMVDNNLNQLQIKLMESLKGKKFLIVLDDVWNDNYNDWYDLRNPFAQGENGSMIIVTTRKESVALMMGSGLINVGTLSTEVSWPLFKRHAFENRDPKENPELEEIGKQIAIKCKGLPLALKTLAGLLRSKSEVEEWRRVLRS

superfamily: SSF52540
2-242 SSF52540

RRLSTSVVDESGIFGRQNEINILVDRLLSDDAKEKKLTVIPIIGMAGVGKTTLAKVVYNDEKVKQHFKLESWICVSEPYDVFRITKGLLQEIGSSDLMVDNNLNQLQIKLMESLKGKKFLIVLDDVWNDNYNDWYDLRNPFAQGENGSMIIVTTRKESVALMMGSGLINVGTLSTEVSWPLFKRHAFENRDPKENPELEEIGKQIAIKCKGLPLALKTLAGLLRSKSEVEEWRRVLRSEIW

Gene3D: G3DSA:3.40.50.300
13-153 G3DSA:3.40.50.300

GIFGRQNEINILVDRLLSDDAKEKKLTVIPIIGMAGVGKTTLAKVVYNDEKVKQHFKLESWICVSEPYDVFRITKGLLQEIGSSDLMVDNNLNQLQIKLMESLKGKKFLIVLDDVWNDNYNDWYDLRNPFAQGENGSMIIV

HMMPfam: PF00931
IPR002182
17-241 NB-ARC,NBS
NB-ARC

RQNEINILVDRLLSDDAKEKKLTVIPIIGMAGVGKTTLAKVVYNDEKVKQHFKLESWICVSEPYDVFRITKGLLQEIGSSDLMVDNNLNQLQIKLMESLKGKKFLIVLDDVWNDNYNDWYDLRNPFAQGENGSMIIVTTRKESVALMMGSGLINVGTLSTEVSWPLFKRHAFENRDPKENPELEEIGKQIAIKCKGLPLALKTLAGLLRSKSEVEEWRRVLRSEI

FPrintScan: PR00364
IPR000767
40-55 DISEASERSIST
Disease resistance protein

VIPIIGMAGVGKTTLA

FPrintScan: PR00364
IPR000767
114-128 DISEASERSIST
Disease resistance protein

SLKGKKFLIVLDDVW

FPrintScan: PR00364
IPR000767
210-224 DISEASERSIST
Disease resistance protein

CKGLPLALKTLAGLL


List of References

Brett C Couch, Russ Spangler, Christine Ramos, Georgiana May
Pervasive purifying selection characterizes the evolution of I2 homologs.
Mol. Plant Microbe Interact.: 2006, 19(3);288-303
PubMed:16570659 WorldCat.org DOI (P p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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