PRGDB00049293 (I2)

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I2
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 77641464 (DQ206215)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Nicotiana tabacum

Comment?

Nicotiana tabacum clone 3155 I2 (I2) gene, partial cds.

DNA Sequence

ACTAGAGTGCCTTCAACATCTTTGGTTGATGAATCTGAAATCTTTGGCAGGCAAAATGAAATAGAGGAATTGTTGGGCCGTTTATTATCTGTTGATACAAATGGTAAAAGTTTGAGAGTAATTCCTATTGTAGGAATGCCTGGGCTTGGCAAGACAGCACTTGCTAAAGTTGTTTATAATGATGAGAAGGTTAAAAACTATTTCGATTTGAAAGCTTGGTTTTGTGTGTCTGAACCATATGATGATTTCAGAATAACAAAAGGTTTACTTCAAGAAATTGGCTCATTTGACTCAAAGGACGATAACAATCTTAATCGGCTACAGGTCAAATTGAAGGAAAGCTTAAAGGGCAAAAAATTTCTTATTGTTCTGGATGATGTTTGGAATGACAACTATAATGCATGGGATGACTTGAAAAATATTTTTGTTCAAGGAGATGCAGGAAGTACAATCATTGTGACGACACGTAAGGAAAGTGTTGCCAAGACGATGGGTAATGAGCAAATTAGCATGGATACTTTGTCTAGTGATGTCTCTTGGTCTTTATTCAAAAGACATGCATTTGACAACATGGATCCTAAGGAACATCCAGAACTTGAAGAGGTAGGAAAACAAATCGCAGCTAAGTGCAAAGGTTTGCCCTTAGCACTAAAGACACTTGCTGGTTTGTTAAAGTCCAAATCAAAGATAGAAAAGTGGAGAAGCATTTTGAGGAGTGAAATATGGGA


Protein sequences

Name Description Sequence
I2 I2 [Nicotiana tabacum].

TRVPSTSLVDESEIFGRQNEIEELLGRLLSVDTNGKSLRVIPIVGMPGLGKTALAKVVYNDEKVKNYFDLKAWFCVSEPYDDFRITKGLLQEIGSFDSKDDNNLNRLQVKLKESLKGKKFLIVLDDVWNDNYNAWDDLKNIFVQGDAGSTIIVTTRKESVAKTMGNEQISMDTLSSDVSWSLFKRHAFDNMDPKEHPELEEVGKQIAAKCKGLPLALKTLAGLLKSKSKIEKWRSILRSEIW

Domains

Domain Start-End Description Sequence

superfamily: SSF52540
2-242 SSF52540

RVPSTSLVDESEIFGRQNEIEELLGRLLSVDTNGKSLRVIPIVGMPGLGKTALAKVVYNDEKVKNYFDLKAWFCVSEPYDDFRITKGLLQEIGSFDSKDDNNLNRLQVKLKESLKGKKFLIVLDDVWNDNYNAWDDLKNIFVQGDAGSTIIVTTRKESVAKTMGNEQISMDTLSSDVSWSLFKRHAFDNMDPKEHPELEEVGKQIAAKCKGLPLALKTLAGLLKSKSKIEKWRSILRSEIW

HMMPanther: PTHR11017:SF20
8-239 PTHR11017:SF20,SUBFAMILY NOT NAMED

LVDESEIFGRQNEIEELLGRLLSVDTNGKSLRVIPIVGMPGLGKTALAKVVYNDEKVKNYFDLKAWFCVSEPYDDFRITKGLLQEIGSFDSKDDNNLNRLQVKLKESLKGKKFLIVLDDVWNDNYNAWDDLKNIFVQGDAGSTIIVTTRKESVAKTMGNEQISMDTLSSDVSWSLFKRHAFDNMDPKEHPELEEVGKQIAAKCKGLPLALKTLAGLLKSKSKIEKWRSILRS

HMMPanther: PTHR11017
8-239 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

LVDESEIFGRQNEIEELLGRLLSVDTNGKSLRVIPIVGMPGLGKTALAKVVYNDEKVKNYFDLKAWFCVSEPYDDFRITKGLLQEIGSFDSKDDNNLNRLQVKLKESLKGKKFLIVLDDVWNDNYNAWDDLKNIFVQGDAGSTIIVTTRKESVAKTMGNEQISMDTLSSDVSWSLFKRHAFDNMDPKEHPELEEVGKQIAAKCKGLPLALKTLAGLLKSKSKIEKWRSILRS

Gene3D: G3DSA:3.40.50.300
9-155 G3DSA:3.40.50.300

VDESEIFGRQNEIEELLGRLLSVDTNGKSLRVIPIVGMPGLGKTALAKVVYNDEKVKNYFDLKAWFCVSEPYDDFRITKGLLQEIGSFDSKDDNNLNRLQVKLKESLKGKKFLIVLDDVWNDNYNAWDDLKNIFVQGDAGSTIIVTT

HMMPfam: PF00931
IPR002182
17-241 NB-ARC,NBS
NB-ARC

RQNEIEELLGRLLSVDTNGKSLRVIPIVGMPGLGKTALAKVVYNDEKVKNYFDLKAWFCVSEPYDDFRITKGLLQEIGSFDSKDDNNLNRLQVKLKESLKGKKFLIVLDDVWNDNYNAWDDLKNIFVQGDAGSTIIVTTRKESVAKTMGNEQISMDTLSSDVSWSLFKRHAFDNMDPKEHPELEEVGKQIAAKCKGLPLALKTLAGLLKSKSKIEKWRSILRSEI

FPrintScan: PR00364
IPR000767
40-55 DISEASERSIST
Disease resistance protein

VIPIVGMPGLGKTALA

FPrintScan: PR00364
IPR000767
114-128 DISEASERSIST
Disease resistance protein

SLKGKKFLIVLDDVW

FPrintScan: PR00364
IPR000767
210-224 DISEASERSIST
Disease resistance protein

CKGLPLALKTLAGLL


List of References

Brett C Couch, Russ Spangler, Christine Ramos, Georgiana May
Pervasive purifying selection characterizes the evolution of I2 homologs.
Mol. Plant Microbe Interact.: 2006, 19(3);288-303
PubMed:16570659 WorldCat.org DOI (P p)





List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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