PRGDB00049302 (I2)

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I2
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 77641446 (DQ206206)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Nicotiana tabacum

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Nicotiana tabacum clone 3147 I2 (I2) gene, partial cds.

DNA Sequence

ACTAGAAAACTTTCAACTTCTGCGGTTGATGAATTTGATATCTTTGGNNGGCAGAATGAAATAAATATATTGGTTGACCGTTTATTGTCTGATGATGCAAATGAAAAAAAGTTGACTGTAATTCCTATTGTTGGAATGGCAGGTGTTGGCAAGACAACACTTGCAAAAGCTGTTTACAACGTTGAGAAGATAAAAGATCATTTTGATTTGAAAGCTTGGATTTGCGTGTCTGAACCATATGATATTTTTAGAATAATAAAAAGGTTACTTCAAGAAATTGGTTCATCCAACTTGTTGGTTGATAACAACCTAAATCAGCTTCAGATCAAATTGAAGGAACACTTAAAGGAAAAAAAGTTTCTTATTGTTTTAGACGATGTTTGGAATGACAACTACAACGAGTGGGATGACTTGAGAAATTCTTTTTCACAAGGAAAAAATGGAAGTAAGATCATCGTGACGACGCGTAAGGAGAGTGTTGCCTTGATGATGGGTAGTGGGCCAATTAACGTGGGAACTTTGTCTACTGAAGTCTCTTGGCCTTTATTCAAAAGACATGCATTTGAAAATAGGGATCCTAAGGAACATCCAGAACTTGAAGAGGTAGGAAAACAAATTGCAAAGAAGTGCAAAGGTTTGCCTTTAGCACTAAAGACGCTTGCTGGTTTGTTGCGCTCCAAATCAGAGGTTGAAGAGTGGACACGTGTTTTGAGAA


Protein sequences

Name Description Sequence
I2 I2 [Nicotiana tabacum].

TRKLSTSAVDEFDIFGXQNEINILVDRLLSDDANEKKLTVIPIVGMAGVGKTTLAKAVYNVEKIKDHFDLKAWICVSEPYDIFRIIKRLLQEIGSSNLLVDNNLNQLQIKLKEHLKEKKFLIVLDDVWNDNYNEWDDLRNSFSQGKNGSKIIVTTRKESVALMMGSGPINVGTLSTEVSWPLFKRHAFENRDPKEHPELEEVGKQIAKKCKGLPLALKTLAGLLRSKSEVEEWTRVLR

Domains

Domain Start-End Description Sequence

superfamily: SSF52540
2-238 SSF52540

RKLSTSAVDEFDIFGXQNEINILVDRLLSDDANEKKLTVIPIVGMAGVGKTTLAKAVYNVEKIKDHFDLKAWICVSEPYDIFRIIKRLLQEIGSSNLLVDNNLNQLQIKLKEHLKEKKFLIVLDDVWNDNYNEWDDLRNSFSQGKNGSKIIVTTRKESVALMMGSGPINVGTLSTEVSWPLFKRHAFENRDPKEHPELEEVGKQIAKKCKGLPLALKTLAGLLRSKSEVEEWTRVLR

HMMPanther: PTHR11017:SF20
9-238 PTHR11017:SF20,SUBFAMILY NOT NAMED

VDEFDIFGXQNEINILVDRLLSDDANEKKLTVIPIVGMAGVGKTTLAKAVYNVEKIKDHFDLKAWICVSEPYDIFRIIKRLLQEIGSSNLLVDNNLNQLQIKLKEHLKEKKFLIVLDDVWNDNYNEWDDLRNSFSQGKNGSKIIVTTRKESVALMMGSGPINVGTLSTEVSWPLFKRHAFENRDPKEHPELEEVGKQIAKKCKGLPLALKTLAGLLRSKSEVEEWTRVLR

HMMPanther: PTHR11017
9-238 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

VDEFDIFGXQNEINILVDRLLSDDANEKKLTVIPIVGMAGVGKTTLAKAVYNVEKIKDHFDLKAWICVSEPYDIFRIIKRLLQEIGSSNLLVDNNLNQLQIKLKEHLKEKKFLIVLDDVWNDNYNEWDDLRNSFSQGKNGSKIIVTTRKESVALMMGSGPINVGTLSTEVSWPLFKRHAFENRDPKEHPELEEVGKQIAKKCKGLPLALKTLAGLLRSKSEVEEWTRVLR

HMMPfam: PF00931
IPR002182
18-237 NB-ARC,NBS
NB-ARC

QNEINILVDRLLSDDANEKKLTVIPIVGMAGVGKTTLAKAVYNVEKIKDHFDLKAWICVSEPYDIFRIIKRLLQEIGSSNLLVDNNLNQLQIKLKEHLKEKKFLIVLDDVWNDNYNEWDDLRNSFSQGKNGSKIIVTTRKESVALMMGSGPINVGTLSTEVSWPLFKRHAFENRDPKEHPELEEVGKQIAKKCKGLPLALKTLAGLLRSKSEVEEWTRVL

Gene3D: G3DSA:3.40.50.300
35-159 G3DSA:3.40.50.300

EKKLTVIPIVGMAGVGKTTLAKAVYNVEKIKDHFDLKAWICVSEPYDIFRIIKRLLQEIGSSNLLVDNNLNQLQIKLKEHLKEKKFLIVLDDVWNDNYNEWDDLRNSFSQGKNGSKIIVTTRKES

FPrintScan: PR00364
IPR000767
40-55 DISEASERSIST
Disease resistance protein

VIPIVGMAGVGKTTLA

FPrintScan: PR00364
IPR000767
114-128 DISEASERSIST
Disease resistance protein

HLKEKKFLIVLDDVW

FPrintScan: PR00364
IPR000767
210-224 DISEASERSIST
Disease resistance protein

CKGLPLALKTLAGLL


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Analyses

Blast

Blast matches against Reference R-Genes. Show


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