PRGDB00049557 (leucine-rich repeat family protein)

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leucine-rich repeat family protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 30694774 (NM_123919)
Gene Class Other
Domain Type LRR, LRR, Others
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana leucine-rich repeat family protein (AT5G45510) mRNA, complete cds.

DNA Sequence

ATGTCTGATCCGTTGAAGATGGCGGCCGAGACGGAGGAGATTAAACCAGTTCCAGCAGCAATGGGAGAAAAGAAGGATGTGGTGTTGTGTAAGAAGATAGTGGAAACTCTGGGAGGAGGTGGTGATCAAAGAGTATTGCTGGTTGGCGAAGCTGGGATCGGGAAGACAAGGATGGCACAAATGGTTGACAAAGAAGCCTCTAAGGATGTTCTTTGCTACCAGACTCTCTGGTTGCATCTCAACAGGAAGTTTAAAGTCAACGACAACTATATCAAGGAGAAGAAGTTTGAAGACGAATGGTCTCTTTATGAGAACATAGCTTCACAGCTATCTTTATACTCTGATTTTGAAGAGACTGAAGTCGGTGAAAGAGATGAAGATGAGGAAGAGGAGAAGAAGGTTGAAGATTTGCTCAAGGATTTGAAGCCCAAGATTGAGAAGTATCTCTTGGAAAAGAAGGAAGCCGTCGTGAAAAAATTGGAGGATGACAAGAAGAAGAAGGAGAAGGAAGCCGCAGAGAAACTGGAGGCTGAGAAAAAACTGGTGGATCCGGCTGCGAAAAAAGCAAAAGACCATGGAAACAAGAATCCAACCGATGCCGCAAAGGAGAAAACGACTCAAGTAGTAGCCGGAGGAGAGGATAAAGCTCAGACATCATCTGAAAGAAAGCCGTATCTTCTTTTGATTCTTGACGATGAAGGAATGACCAGTGAGTACGAGGTGATGGTGCATTTAGGCCTTGAGGATTTTCTGAAAGATCACACACCTCGAAAAATCCTTATTACAAGAAGACAAGAAACTGAGGAGGCTACAAAATCTGGTGAGCATGCTGAGGGGGAGGCAAATGATTCGCAATCCGGGGAAAAGAAAGAGGACACAGATGGTGAAGACGAAATTAGATCAGCTGATAAGGAGGAACCTGAGTCTCAAGCCCGGGTCAAAACAGAGGAGAAACATGAAAAAGTTGTACCTCCTACCATAGATGACTTATGGGGGAGCACAAACACTTATGGTGAAATTACGTTCCAGACCACAAATGAGTCACAAGATTTACTTGAATCATTCAACCTAAAGGAGGCAGAGGCTTTATTTACTTCGTCCATGTTTTTCAAGGATATGCCAAATTTTTTCTTTGACCCCGTTCCTGGGACTGATGAGAAACTGTTAAACCACATGCTGAAAAAGAGCAAGAGTTTGCCAGCTGCAATCAACGTGCTCGCCAAGTCCCTAGAGTACACTGTCAAGAGCAAGTCCTATAAGCTTAATAAGGACGAAGAAGAGAGGTTACTAAAAGAAAAGATAGAAATGGTTCTCTCGGCTGAGCGGGGTAATCCATCCGACCAGGAATCTAGTTCTGAGAGCCCTAAGAAAGCAAGTGGAGAAAATCCAATCCTGCTTCTTGCATACAAGCTGTTCAAAACCGATGGTCCATTGAAGGATACAATATTGGATTGTTTTTGGCATAGCTTGGACTTCTTTGAGCATTGTGGCTGTGTTTACTACCGTGACCTGATCACACAATGGATACTTGAAGGCTACTTTGATCCTGTTAGGTCTGTCGAAAAGGCGTACCAGGATGGTCATTCTATCTTCATGGAGCTTATAGACCGCGGAATGCTGAAGATACAAGAAAACAATGTGGTAGTACCAGAGATGGCGATGAGAAATGTAATTGATCCTCGACGTGGTGGGCATTTAGGGAAATCTCGGCTTGGATTTTCTAGAGTCTATGGTGGTAACAAGAGAAAAGGAATAGGGAAAATCACCCAACTTGATGATATGATTAAAACAGTGCAAGCAAAGAAAGGAGACAAGATTACCACGATTCTGGTTAGTGGAGATCGTCTGCGTCGCGTAACTCCTAAAAAGTTCTTCAAGAATCTGAAAGAGCTTGAAGTACTTGGCCTTTTTGAGCCCACAGTAAAACCATTTGTCCCGTCTTTTTCAGATCAGCTCAAACTCCTCCGGGTTCTTATAATCAGGGACTGTGATCTCCTGAAAAGCATTGAAGAGCTTAAGGCTCTTACAAAGCTAAATACTCTTGAAGTTTCTGGTGCTAGCTCCCTGAGCAAAATATCTGAAAAATTCTTTGAGTCATTTCCTGAACTCCGAAGTCTTCACCTCTCTGGGCTTAAGATCGAGTCTTCCCCTCCCAGTATTTCTGGCCTGAAGGAACTTCACTGTCTCATCATCAAAGACTGCCCTTTATTGCAAGATCTGCCAAACATACAAGAACTAGTAAATCTTGAGGTTGTTGATGTTTCTGGTGCTAGTGGGCTTCGAACTTGTTTCGACAACGCAGATGGTGCCAAGAAAAACAAGAGCAAAAACAAAAACTTTTATCTTCTTACAAAACTTCAGCATCTTGACTTCTCGGGGAGCCAAATAGAGCGACTGCCAATATTCCAGGATTCTGCGGTGGCCGCCAAGCTTCACTCCTTGACTCGGCTCTTGTTGCGCAACTGTAGCAAATTGAGAAGGTTGCCTAGTTTGAAGCCCTTGTCAGGACTTCAAATTCTTGATCTTTCTGGCACTACGAGCTTAGTGGAAATGCTTGAAGTGTGCTTCGAGGATAAGCTTGAACTCAAAACTCTTAATCTCTCGGGAACTAATCTTAGCGAGTTGGCTACCACCATCGAGGACCTGTCCAGTCTCAACGAACTCCTCCTACGTGATTGCATCAACCTAGATGCCATCCCAAACATCGAGAAACTAGAAAATCTCGAAGTCATTGATGTTTCCGGCAGTGCCAAGCTGGCAAAGATTGAGGGATCATTTGAGAAAATGTTTTACCTACGTGTAGTGGATCTGTCTGGAACCCAAGTGGAGACACCAGAGTTGCCAGCGGATACCAAAATCCATTGTCTGAAGCGTTTTACTCGGGCAGATGGAAAATGTTTTGAACGTGACACATGGAGAGAAATAAAGGAAGACATTGAACGTGATAGGTCTGAGAATGCCAGCTCCTCTGATGCAGTTGTTATATCTCAAGAAATCACAGAAAAGAAGCCTGTAGAAATAAGAGAGGTTGAATCGAATGCACCTCGCGCCAGTGATTGTACCGAGAAAGTAGATGTCAACAAGGAACGTCTTCTTAAAGTCCCCATAGATAGGGCTCTATATCAGAAGGCACTAACATCACTTGTTGATTCCAAAATTCCACAAGAAGAAGTCTTGGAGATCAATGAAACTAATAAGCTAGATGAGGAAGCACTAGCTAGTGCTGAGTTTGTGTCTTTTGTGGACTGTACTCCTGAAAGGGTCAAATCTATCTTTGAGAAGGCCAAATTGGTGAAGGGTTGCTGGCTAAGGATGTGCTTTGACATAAAAGACCCTTTCGATGGTGTGGATGAGGAGAACTTGAAATCACTGGAGACTTTATCGATTACAAACCTTCTCTCATTGGAGACTATAAGCTTTATTGCTAAGTTAGAGAATCTGAAGAACCTAAGCTTAGATTGCTGCCCGAAAATCAAAACGATTTTCCCGGAGATGCCTGCCAGCCTACCAGTCCTGAATTTAAAGCATTGTGAGAACCTGGAGAAAGTTGTTGTAGGAGTTGAAGTGTCAACTCACACTAATCTGGATTTGAAAGTGGAGAATTGTCCAAAATTCGGGGACTACGTAATGGTTGACCACAGTGATGTACCTCCACCACATGAATGCTGA


Protein sequences

Name Description Sequence
leucine-rich repeat family protein leucine-rich repeat family protein [Arabidopsis thaliana].

MSDPLKMAAETEEIKPVPAAMGEKKDVVLCKKIVETLGGGGDQRVLLVGEAGIGKTRMAQMVDKEASKDVLCYQTLWLHLNRKFKVNDNYIKEKKFEDEWSLYENIASQLSLYSDFEETEVGERDEDEEEEKKVEDLLKDLKPKIEKYLLEKKEAVVKKLEDDKKKKEKEAAEKLEAEKKLVDPAAKKAKDHGNKNPTDAAKEKTTQVVAGGEDKAQTSSERKPYLLLILDDEGMTSEYEVMVHLGLEDFLKDHTPRKILITRRQETEEATKSGEHAEGEANDSQSGEKKEDTDGEDEIRSADKEEPESQARVKTEEKHEKVVPPTIDDLWGSTNTYGEITFQTTNESQDLLESFNLKEAEALFTSSMFFKDMPNFFFDPVPGTDEKLLNHMLKKSKSLPAAINVLAKSLEYTVKSKSYKLNKDEEERLLKEKIEMVLSAERGNPSDQESSSESPKKASGENPILLLAYKLFKTDGPLKDTILDCFWHSLDFFEHCGCVYYRDLITQWILEGYFDPVRSVEKAYQDGHSIFMELIDRGMLKIQENNVVVPEMAMRNVIDPRRGGHLGKSRLGFSRVYGGNKRKGIGKITQLDDMIKTVQAKKGDKITTILVSGDRLRRVTPKKFFKNLKELEVLGLFEPTVKPFVPSFSDQLKLLRVLIIRDCDLLKSIEELKALTKLNTLEVSGASSLSKISEKFFESFPELRSLHLSGLKIESSPPSISGLKELHCLIIKDCPLLQDLPNIQELVNLEVVDVSGASGLRTCFDNADGAKKNKSKNKNFYLLTKLQHLDFSGSQIERLPIFQDSAVAAKLHSLTRLLLRNCSKLRRLPSLKPLSGLQILDLSGTTSLVEMLEVCFEDKLELKTLNLSGTNLSELATTIEDLSSLNELLLRDCINLDAIPNIEKLENLEVIDVSGSAKLAKIEGSFEKMFYLRVVDLSGTQVETPELPADTKIHCLKRFTRADGKCFERDTWREIKEDIERDRSENASSSDAVVISQEITEKKPVEIREVESNAPRASDCTEKVDVNKERLLKVPIDRALYQKALTSLVDSKIPQEEVLEINETNKLDEEALASAEFVSFVDCTPERVKSIFEKAKLVKGCWLRMCFDIKDPFDGVDEENLKSLETLSITNLLSLETISFIAKLENLKNLSLDCCPKIKTIFPEMPASLPVLNLKHCENLEKVVVGVEVSTHTNLDLKVENCPKFGDYVMVDHSDVPPPHEC


Domains

Domain Start-End Description Sequence

FPrintScan: PR00364
IPR000767
44-59 DISEASERSIST
Disease resistance protein

RVLLVGEAGIGKTRMA

Seg: seg
117-142 seg

EETEVGERDEDEEEEKKVEDLLKDLK

Seg: seg
146-183 seg

EKYLLEKKEAVVKKLEDDKKKKEKEAAEKLEAEKKLVD

Coil: coil
150-181 coiled-coil

LEKKEAVVKKLEDDKKKKEKEAAEKLEAEKKL

Seg: seg
287-298 seg

GEKKEDTDGEDE

FPrintScan: PR00364
IPR000767
396-410 DISEASERSIST
Disease resistance protein

SKSLPAAINVLAKSL

superfamily: SSF52058
500-1178 L domain-like,LRR

YYRDLITQWILEGYFDPVRSVEKAYQDGHSIFMELIDRGMLKIQENNVVVPEMAMRNVIDPRRGGHLGKSRLGFSRVYGGNKRKGIGKITQLDDMIKTVQAKKGDKITTILVSGDRLRRVTPKKFFKNLKELEVLGLFEPTVKPFVPSFSDQLKLLRVLIIRDCDLLKSIEELKALTKLNTLEVSGASSLSKISEKFFESFPELRSLHLSGLKIESSPPSISGLKELHCLIIKDCPLLQDLPNIQELVNLEVVDVSGASGLRTCFDNADGAKKNKSKNKNFYLLTKLQHLDFSGSQIERLPIFQDSAVAAKLHSLTRLLLRNCSKLRRLPSLKPLSGLQILDLSGTTSLVEMLEVCFEDKLELKTLNLSGTNLSELATTIEDLSSLNELLLRDCINLDAIPNIEKLENLEVIDVSGSAKLAKIEGSFEKMFYLRVVDLSGTQVETPELPADTKIHCLKRFTRADGKCFERDTWREIKEDIERDRSENASSSDAVVISQEITEKKPVEIREVESNAPRASDCTEKVDVNKERLLKVPIDRALYQKALTSLVDSKIPQEEVLEINETNKLDEEALASAEFVSFVDCTPERVKSIFEKAKLVKGCWLRMCFDIKDPFDGVDEENLKSLETLSITNLLSLETISFIAKLENLKNLSLDCCPKIKTIFPEMPASLPVLNLKHCE

Gene3D: G3DSA:3.80.10.10
604-756 no description

DKITTILVSGDRLRRVTPKKFFKNLKELEVLGLFEPTVKPFVPSFSDQLKLLRVLIIRDCDLLKSIEELKALTKLNTLEVSGASSLSKISEKFFESFPELRSLHLSGLKIESSPPSISGLKELHCLIIKDCPLLQDLPNIQELVNLEVVDVSG

HMMPanther: PTHR23155
651-1176 FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

QLKLLRVLIIRDCDLLKSIEELKALTKLNTLEVSGASSLSKISEKFFESFPELRSLHLSGLKIESSPPSISGLKELHCLIIKDCPLLQDLPNIQELVNLEVVDVSGASGLRTCFDNADGAKKNKSKNKNFYLLTKLQHLDFSGSQIERLPIFQDSAVAAKLHSLTRLLLRNCSKLRRLPSLKPLSGLQILDLSGTTSLVEMLEVCFEDKLELKTLNLSGTNLSELATTIEDLSSLNELLLRDCINLDAIPNIEKLENLEVIDVSGSAKLAKIEGSFEKMFYLRVVDLSGTQVETPELPADTKIHCLKRFTRADGKCFERDTWREIKEDIERDRSENASSSDAVVISQEITEKKPVEIREVESNAPRASDCTEKVDVNKERLLKVPIDRALYQKALTSLVDSKIPQEEVLEINETNKLDEEALASAEFVSFVDCTPERVKSIFEKAKLVKGCWLRMCFDIKDPFDGVDEENLKSLETLSITNLLSLETISFIAKLENLKNLSLDCCPKIKTIFPEMPASLPVLNLKH

FPrintScan: PR00364
IPR000767
832-848 DISEASERSIST
Disease resistance protein

KPLSGLQILDLSGTTSL

Gene3D: G3DSA:3.80.10.10
1089-1182 no description

KSIFEKAKLVKGCWLRMCFDIKDPFDGVDEENLKSLETLSITNLLSLETISFIAKLENLKNLSLDCCPKIKTIFPEMPASLPVLNLKHCENLEK






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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