PRGDB00049565 (disease resistance-like protein)
| disease resistance-like protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 24459864 (AJ298896) |
| Gene Class | NL |
| Domain Type | NBS, LRR |
| Gene Species | Coffea canephora |
DNA Sequence
TGGTGTAGGTAAAACAACTTTAGCCAAAAAGGTTTATAATGATAGTTCAGTAATCTGTAACTTCCACATTCGTCTTTGGTGCACTGTTTCTCCAGAATTTAACACGAAAAGCTTGTTAATACAAATTTTGTGCTCTAATGGAAAACAGTCTAGGATGGATGAAGAGCTTAAAAACTTGAATGAACATGAACTGCTTCACAAGCTCTATCAAAGGCTGAAGACGAAGAGGTATCTTGTTGTTTTTGATGATGTCTGGGACATTAAGGTATGGAATGAGCTGAGAATTTCATTCCCCGATGAAAAGAAAGGAAGTAGAATCATCTTCACGAGTCGATCTTCTAATGTGGCTTCACAGGTTGAATTTGGGGGGAAACCTCACAATCTTGTCCCACTCAGTGAGAAAGAAAGTTTTGAATTACTGCTGAAGAAGGTTTTTGGAAATGAAGATTGTCCTCAAGCATTGCATGGATTGGGAATGGAGATTGCCAAAAAGTGCAGGGGATTACCATTCGCAAT
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance-like protein | disease resistance-like protein [Coffea canephora]. | GVGKTTLAKKVYNDSSVICNFHIRLWCTVSPEFNTKSLLIQILCSNGKQSRMDEELKNLNEHELLHKLYQRLKTKRYLVVFDDVWDIKVWNELRISFPDEKKGSRIIFTSRSSNVASQVEFGGKPHNLVPLSEKESFELLLKKVFGNEDCPQALHGLGMEIAKKCRGLPFA |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPfam: PF00931 IPR002182
|
1-171 | NB-ARC,NBS NB-ARC
|
GVGKTTLAKKVYNDSSVICNFHIRLWCTVSPEFNTKSLLIQILCSNGKQSRMDEELKNLNEHELLHKLYQRLKTKRYLVVFDDVWDIKVWNELRISFPDEKKGSRIIFTSRSSNVASQVEFGGKPHNLVPLSEKESFELLLKKVFGNEDCPQALHGLGMEIAKKCRGLPFA |
| HMMPanther: PTHR11017 | 1-171 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | GVGKTTLAKKVYNDSSVICNFHIRLWCTVSPEFNTKSLLIQILCSNGKQSRMDEELKNLNEHELLHKLYQRLKTKRYLVVFDDVWDIKVWNELRISFPDEKKGSRIIFTSRSSNVASQVEFGGKPHNLVPLSEKESFELLLKKVFGNEDCPQALHGLGMEIAKKCRGLPFA |
| Gene3D: G3DSA:3.40.50.300 | 1-119 | G3DSA:3.40.50.300 | GVGKTTLAKKVYNDSSVICNFHIRLWCTVSPEFNTKSLLIQILCSNGKQSRMDEELKNLNEHELLHKLYQRLKTKRYLVVFDDVWDIKVWNELRISFPDEKKGSRIIFTSRSSNVASQV |
| HMMPanther: PTHR11017:SF20 | 1-171 | PTHR11017:SF20,SUBFAMILY NOT NAMED | GVGKTTLAKKVYNDSSVICNFHIRLWCTVSPEFNTKSLLIQILCSNGKQSRMDEELKNLNEHELLHKLYQRLKTKRYLVVFDDVWDIKVWNELRISFPDEKKGSRIIFTSRSSNVASQVEFGGKPHNLVPLSEKESFELLLKKVFGNEDCPQALHGLGMEIAKKCRGLPFA |
| superfamily: SSF52540 | 1-171 | SSF52540 | GVGKTTLAKKVYNDSSVICNFHIRLWCTVSPEFNTKSLLIQILCSNGKQSRMDEELKNLNEHELLHKLYQRLKTKRYLVVFDDVWDIKVWNELRISFPDEKKGSRIIFTSRSSNVASQVEFGGKPHNLVPLSEKESFELLLKKVFGNEDCPQALHGLGMEIAKKCRGLPFA |
List of References
S Noir, M C Combes, F Anthony, P Lashermes
Origin, diversity and evolution of NBS-type disease-resistance gene homologues in coffee trees (Coffea L.).
Mol. Genet. Genomics: 2001, 265(4);654-62
PubMed:11459185
WorldCat.org
(P p)
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