PRGDB00049566 (disease resistance-like protein)

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disease resistance-like protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 24459862 (AJ298895)
Gene Class NL
Domain Type NBS, LRR
Gene Species Coffea arabica

Comment?

Coffea arabica partial ORF for disease resistance-like protein, clone NBS ArgaI1.

DNA Sequence

GGGTGTTGGGAAAACAACTTTAGCCAAAAAGGTTTATAATGATAGTTCAGTAATCTGTAACTTCCACATTCGTCTTTGGTGCACTGTTTCTCCAGAATTTAACACGAAAAGCTTGTTAATACAAATTTTGTGCTCTAATGGAAAACAGTCTAGGATGGATGAAGAGCTTAAAAACTTGAATGAACATGAACTGCTTCACAAGCTCTATCAAAGGCTGAAGACGAAGAGGTATCTTGTTGTTTTTGATGATGTCTGGGACATTAAGGTATGGAATGAGCTGAGAATTTCATTCCCCGATGAAAAGAAAGGAAGTAGAATCATCTTCACGAGTCGATCTTCTAATGTGGCTTCACAGGTTGAATTTGGGGGGAAACCTCACAATCTTGTCCCACTCAGTGAGAAAGAAAGTTTTGAATTACTGCTGAAGAAGGTTTTTGGAAATGAAGATTGTCCTCAAGCATTGCATGGATTGGGAATGGAGATTGCCAAAAAGTGCAGGGGGTTTCCATTCGCAAT


Protein sequences

Name Description Sequence
disease resistance-like protein disease resistance-like protein [Coffea arabica].

GVGKTTLAKKVYNDSSVICNFHIRLWCTVSPEFNTKSLLIQILCSNGKQSRMDEELKNLNEHELLHKLYQRLKTKRYLVVFDDVWDIKVWNELRISFPDEKKGSRIIFTSRSSNVASQVEFGGKPHNLVPLSEKESFELLLKKVFGNEDCPQALHGLGMEIAKKCRGFPFA


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017:SF20
1-171 PTHR11017:SF20,SUBFAMILY NOT NAMED

GVGKTTLAKKVYNDSSVICNFHIRLWCTVSPEFNTKSLLIQILCSNGKQSRMDEELKNLNEHELLHKLYQRLKTKRYLVVFDDVWDIKVWNELRISFPDEKKGSRIIFTSRSSNVASQVEFGGKPHNLVPLSEKESFELLLKKVFGNEDCPQALHGLGMEIAKKCRGFPFA

superfamily: SSF52540
1-171 SSF52540

GVGKTTLAKKVYNDSSVICNFHIRLWCTVSPEFNTKSLLIQILCSNGKQSRMDEELKNLNEHELLHKLYQRLKTKRYLVVFDDVWDIKVWNELRISFPDEKKGSRIIFTSRSSNVASQVEFGGKPHNLVPLSEKESFELLLKKVFGNEDCPQALHGLGMEIAKKCRGFPFA

Gene3D: G3DSA:3.40.50.300
1-119 G3DSA:3.40.50.300

GVGKTTLAKKVYNDSSVICNFHIRLWCTVSPEFNTKSLLIQILCSNGKQSRMDEELKNLNEHELLHKLYQRLKTKRYLVVFDDVWDIKVWNELRISFPDEKKGSRIIFTSRSSNVASQV

HMMPanther: PTHR11017
1-171 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GVGKTTLAKKVYNDSSVICNFHIRLWCTVSPEFNTKSLLIQILCSNGKQSRMDEELKNLNEHELLHKLYQRLKTKRYLVVFDDVWDIKVWNELRISFPDEKKGSRIIFTSRSSNVASQVEFGGKPHNLVPLSEKESFELLLKKVFGNEDCPQALHGLGMEIAKKCRGFPFA

HMMPfam: PF00931
IPR002182
1-171 NB-ARC,NBS
NB-ARC

GVGKTTLAKKVYNDSSVICNFHIRLWCTVSPEFNTKSLLIQILCSNGKQSRMDEELKNLNEHELLHKLYQRLKTKRYLVVFDDVWDIKVWNELRISFPDEKKGSRIIFTSRSSNVASQVEFGGKPHNLVPLSEKESFELLLKKVFGNEDCPQALHGLGMEIAKKCRGFPFA


List of References

S Noir, M C Combes, F Anthony, P Lashermes
Origin, diversity and evolution of NBS-type disease-resistance gene homologues in coffee trees (Coffea L.).
Mol. Genet. Genomics: 2001, 265(4);654-62
PubMed:11459185 WorldCat.org (P p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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