PRGDB00049570 (disease resistance-like protein)

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disease resistance-like protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 24459854 (AJ298891)
Gene Class N
Domain Type NBS
Gene Species Coffea arabica

Comment?

Coffea arabica partial ORF for disease resistance-like protein, clone NBS Arga G1.

DNA Sequence

GGGGGTGGGAAGACGACACTGGCGAGGCACATTGAGTACCATCTTTTAGAAAAGAACAATTATCGGGTGCTTTGGGTTACAGAATCTCAAGATTTCAGTATCACCAATTTGCAGGATAAGATTGCCAATGTCTTAGGCATTACTCTATCAAGTAGGGACGAGGAAGACGCCAGGGCAAGAATATTGCGTGAAGCATTCAGGAAAATGCTGAAATTAATAGTACTCATATTGGATGATGTTTGGGAAGAATTTTGTTTAGACAGGGTAGGGATTCCTCTTCATCCAAACAAGTGCAGATTGATTTTGACTACACGCTCACTGGAAGTGTGCAACAGGATACAATGTCAAAGAAAGTTTGATTTGCAAACTTTGGACACGGACGAAGCTTGGGATTTGTTCAAGTATAAACTTGGCAGAGAGCCCTTGCTTCAAGGAGATTTGGAAAGTATTGCCAAGTCCATTGTGGAAGAGTGTGATGGGTTGCCCTTGGCCTT


Protein sequences

Name Description Sequence
disease resistance-like protein disease resistance-like protein [Coffea arabica].

GGGKTTLARHIEYHLLEKNNYRVLWVTESQDFSITNLQDKIANVLGITLSSRDEEDARARILREAFRKMLKLIVLILDDVWEEFCLDRVGIPLHPNKCRLILTTRSLEVCNRIQCQRKFDLQTLDTDEAWDLFKYKLGREPLLQGDLESIAKSIVEECDGLPLA


Domains

Domain Start-End Description Sequence

HMMPfam: PF00931
IPR002182
1-164 NB-ARC,NBS
NB-ARC

GGGKTTLARHIEYHLLEKNNYRVLWVTESQDFSITNLQDKIANVLGITLSSRDEEDARARILREAFRKMLKLIVLILDDVWEEFCLDRVGIPLHPNKCRLILTTRSLEVCNRIQCQRKFDLQTLDTDEAWDLFKYKLGREPLLQGDLESIAKSIVEECDGLPLA

superfamily: SSF52540
1-164 SSF52540

GGGKTTLARHIEYHLLEKNNYRVLWVTESQDFSITNLQDKIANVLGITLSSRDEEDARARILREAFRKMLKLIVLILDDVWEEFCLDRVGIPLHPNKCRLILTTRSLEVCNRIQCQRKFDLQTLDTDEAWDLFKYKLGREPLLQGDLESIAKSIVEECDGLPLA

Gene3D: G3DSA:3.40.50.300
1-69 G3DSA:3.40.50.300

GGGKTTLARHIEYHLLEKNNYRVLWVTESQDFSITNLQDKIANVLGITLSSRDEEDARARILREAFRKM

Gene3D: G3DSA:3.40.50.300
102-126 G3DSA:3.40.50.300

LTTRSLEVCNRIQCQRKFDLQTLDT


List of References

S Noir, M C Combes, F Anthony, P Lashermes
Origin, diversity and evolution of NBS-type disease-resistance gene homologues in coffee trees (Coffea L.).
Mol. Genet. Genomics: 2001, 265(4);654-62
PubMed:11459185 WorldCat.org (P p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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