PRGDB00049573 (disease resistance-like protein)
| disease resistance-like protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 24459848 (AJ298888) |
| Gene Class | NL |
| Domain Type | NBS, LRR |
| Gene Species | Coffea canephora |
DNA Sequence
GGCGGTGTAGGTAAAACTACCCTAGTCAAAAAAGTCCATGAAGATCCAGAAGTAAGAAAGAATTTCCCAGTTCGTGCCTGGGTAACCGTCTCTCAAACATGCGACTTTCCAAAGCTCCTGAGAGACTTGATTCGGCAGTTGAACAAGGACTTGGACAAATCAGTCCCGCAATCGATCGAGTCCATGACTACCGCTGAGCTGAAAGAATTTGTCAAAGATTTTCTTCGACGAGCTGGAAGGTATGCAATTGTGTTTGATGACGTGTGGGACGTGGAATTTTGGAATGAAATCAAATTTGCACTGCCTGAGGGTAACTACGGCAATCGTGTCATGCTGACAACACGAAAAGCCGATGTAGCCTCTGCCTCTTGCACAGAATCTCAGGATTATGTCTACAAAATGGAGCCACTATCAATTGAAGATTCGTGGACCCTATTTTGCAACAAGATCTTTAAAGGAAATCGTTGCCCCGCCCACCTGATGGATGTTGCGAAAGCTGTATTGGACAAATGTGACGGTTTGCCTTTGGCGTT
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance-like protein | disease resistance-like protein [Coffea canephora]. | GGVGKTTLVKKVHEDPEVRKNFPVRAWVTVSQTCDFPKLLRDLIRQLNKDLDKSVPQSIESMTTAELKEFVKDFLRRAGRYAIVFDDVWDVEFWNEIKFALPEGNYGNRVMLTTRKADVASASCTESQDYVYKMEPLSIEDSWTLFCNKIFKGNRCPAHLMDVAKAVLDKCDGLPLA |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52540 | 1-177 | SSF52540 | GGVGKTTLVKKVHEDPEVRKNFPVRAWVTVSQTCDFPKLLRDLIRQLNKDLDKSVPQSIESMTTAELKEFVKDFLRRAGRYAIVFDDVWDVEFWNEIKFALPEGNYGNRVMLTTRKADVASASCTESQDYVYKMEPLSIEDSWTLFCNKIFKGNRCPAHLMDVAKAVLDKCDGLPLA |
| HMMPanther: PTHR11017:SF126 | 1-177 | PTHR11017:SF126,OS11G0237600 PROTEIN | GGVGKTTLVKKVHEDPEVRKNFPVRAWVTVSQTCDFPKLLRDLIRQLNKDLDKSVPQSIESMTTAELKEFVKDFLRRAGRYAIVFDDVWDVEFWNEIKFALPEGNYGNRVMLTTRKADVASASCTESQDYVYKMEPLSIEDSWTLFCNKIFKGNRCPAHLMDVAKAVLDKCDGLPLA |
| HMMPanther: PTHR11017 | 1-177 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | GGVGKTTLVKKVHEDPEVRKNFPVRAWVTVSQTCDFPKLLRDLIRQLNKDLDKSVPQSIESMTTAELKEFVKDFLRRAGRYAIVFDDVWDVEFWNEIKFALPEGNYGNRVMLTTRKADVASASCTESQDYVYKMEPLSIEDSWTLFCNKIFKGNRCPAHLMDVAKAVLDKCDGLPLA |
| HMMPfam: PF00931 IPR002182
|
1-177 | NB-ARC,NBS NB-ARC
|
GGVGKTTLVKKVHEDPEVRKNFPVRAWVTVSQTCDFPKLLRDLIRQLNKDLDKSVPQSIESMTTAELKEFVKDFLRRAGRYAIVFDDVWDVEFWNEIKFALPEGNYGNRVMLTTRKADVASASCTESQDYVYKMEPLSIEDSWTLFCNKIFKGNRCPAHLMDVAKAVLDKCDGLPLA |
| Gene3D: G3DSA:3.40.50.300 | 2-125 | G3DSA:3.40.50.300 | GVGKTTLVKKVHEDPEVRKNFPVRAWVTVSQTCDFPKLLRDLIRQLNKDLDKSVPQSIESMTTAELKEFVKDFLRRAGRYAIVFDDVWDVEFWNEIKFALPEGNYGNRVMLTTRKADVASASCT |
List of References
S Noir, M C Combes, F Anthony, P Lashermes
Origin, diversity and evolution of NBS-type disease-resistance gene homologues in coffee trees (Coffea L.).
Mol. Genet. Genomics: 2001, 265(4);654-62
PubMed:11459185
WorldCat.org
(P p)
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