PRGDB00049574 (disease resistance-like protein)

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disease resistance-like protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 24459846 (AJ298887)
Gene Class NL
Domain Type NBS, LRR
Gene Species Coffea canephora

Comment?

Coffea canephora partial ORF for disease resistance-like protein, clone NBS CrgaD1.

DNA Sequence

GGGGGTGTTGGCAAAACAACATTGTATGAAGATCCGAGTGTGAAGAGACGGCTCCAAAGCCATGCTTGGTTAACTGTTTCCCAGACATTTCATATGGACCTGATCCTCAAGAACTTGATTTGTCAATTGTACAATGAATACCAGGAACAAGTCCCTCGATACGTGGAGGCCATGGATAGTGACCAGTTAAGAGCATTTGTCAAAGATCTTTTGCAAAAACGAACTTATATCATTGTTCTTGATGACATATGGAGGTTGGATTCATGGGAGGCAATCAAATATGCATTTCCCGATGCCAGTTGTCATAGTCGTATGATGCTCACGACACGAATAGCTGATACAACCTTCAGATCTTGCACACAGTCACGTGACCATGTCCACAAGATGATGCCTTGGACTCTGTTTTGCAGTAAAACGTTTGGGGGTAATTGCTGCCCTTCACATCTAGAGAACATTTCAAGACGTATTCTTGGTAAATGTGATGGCTTCCCCCTCGCCCT


Protein sequences

Name Description Sequence
disease resistance-like protein disease resistance-like protein [Coffea canephora].

GGVGKTTLYEDPSVKRRLQSHAWLTVSQTFHMDLILKNLICQLYNEYQEQVPRYVEAMDSDQLRAFVKDLLQKRTYIIVLDDIWRLDSWEAIKYAFPDASCHSRMMLTTRIADTTFRSCTQSRDHVHKMMPWTLFCSKTFGGNCCPSHLENISRRILGKCDGFPLAL


Domains

Domain Start-End Description Sequence

HMMPfam: PF00931
IPR002182
1-167 NB-ARC,NBS
NB-ARC

GGVGKTTLYEDPSVKRRLQSHAWLTVSQTFHMDLILKNLICQLYNEYQEQVPRYVEAMDSDQLRAFVKDLLQKRTYIIVLDDIWRLDSWEAIKYAFPDASCHSRMMLTTRIADTTFRSCTQSRDHVHKMMPWTLFCSKTFGGNCCPSHLENISRRILGKCDGFPLAL

HMMPanther: PTHR11017:SF126
1-167 PTHR11017:SF126,OS11G0237600 PROTEIN

GGVGKTTLYEDPSVKRRLQSHAWLTVSQTFHMDLILKNLICQLYNEYQEQVPRYVEAMDSDQLRAFVKDLLQKRTYIIVLDDIWRLDSWEAIKYAFPDASCHSRMMLTTRIADTTFRSCTQSRDHVHKMMPWTLFCSKTFGGNCCPSHLENISRRILGKCDGFPLAL

HMMPanther: PTHR11017
1-167 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GGVGKTTLYEDPSVKRRLQSHAWLTVSQTFHMDLILKNLICQLYNEYQEQVPRYVEAMDSDQLRAFVKDLLQKRTYIIVLDDIWRLDSWEAIKYAFPDASCHSRMMLTTRIADTTFRSCTQSRDHVHKMMPWTLFCSKTFGGNCCPSHLENISRRILGKCDGFPLAL

superfamily: SSF52540
1-167 SSF52540

GGVGKTTLYEDPSVKRRLQSHAWLTVSQTFHMDLILKNLICQLYNEYQEQVPRYVEAMDSDQLRAFVKDLLQKRTYIIVLDDIWRLDSWEAIKYAFPDASCHSRMMLTTRIADTTFRSCTQSRDHVHKMMPWTLFCSKTFGGNCCPSHLENISRRILGKCDGFPLAL


List of References

S Noir, M C Combes, F Anthony, P Lashermes
Origin, diversity and evolution of NBS-type disease-resistance gene homologues in coffee trees (Coffea L.).
Mol. Genet. Genomics: 2001, 265(4);654-62
PubMed:11459185 WorldCat.org (P p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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