PRGDB00049575 (disease resistance-like protein)

disease resistance-like protein
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	24459844 (AJ298886)
Gene Class	NL
Domain Type	NBS, LRR, Others
Gene Species	Coffea arabica
	Comment?

Coffea arabica partial ORF for disease resistance-like protein, clone NBS ArgaC1.

DNA Sequence

GGGGGTGGGAAGACTACCCTGGTGAAAAAAGCCTACGATGACGCTGCAGTGAAGAAACAATTTCAGAGCCATGCCTGGATAACTGTTTCTCAAAATTTTCAGTTCAGGGGCATCATCAAAAACCTGATCCAACAGTTGTACAACGAAATCAGACAGCCGGTCCCTCCCGAAGTGGAATCCATGGATGATATTATGCTGAGTGAATTTGTCAAAGACTTCCTCCGAGACAGAAGGTACATTCTTGTCCTTGATGATGTGTGGAGTATAGATGCCTGGGAAGCTATCAAATGTGTATTGCCTGACTGCAATACTGCTAGTCGTGTTGTATTGACAACACGAATAGCTGATGTAGCTTCTGCGCCCTGTTTAGGATCACTTGGCTTCATCTATAAGATGGAGCCTCTTTCTGATAAAGAGTCTTGGATTCTGTTTTGCAATAGAACATTTCAGAGCAATGACTGTCCTCCAAATCTAGAAGAAGCTGCTAAAAAAATACTGAAAAAATGTGAGGGCCTACCGCTCGCACT

Protein sequences

Name	Description	Sequence
disease resistance-like protein	disease resistance-like protein [Coffea arabica].	GGGKTTLVKKAYDDAAVKKQFQSHAWITVSQNFQFRGIIKNLIQQLYNEIRQPVPPEVESMDDIMLSEFVKDFLRDRRYILVLDDVWSIDAWEAIKCVLPDCNTASRVVLTTRIADVASAPCLGSLGFIYKMEPLSDKESWILFCNRTFQSNDCPPNLEEAAKKILKKCEGLPLAL

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF52540	1-176	SSF52540	GGGKTTLVKKAYDDAAVKKQFQSHAWITVSQNFQFRGIIKNLIQQLYNEIRQPVPPEVESMDDIMLSEFVKDFLRDRRYILVLDDVWSIDAWEAIKCVLPDCNTASRVVLTTRIADVASAPCLGSLGFIYKMEPLSDKESWILFCNRTFQSNDCPPNLEEAAKKILKKCEGLPLAL
HMMPfam: PF00931 IPR002182	1-176	NB-ARC,NBS NB-ARC	GGGKTTLVKKAYDDAAVKKQFQSHAWITVSQNFQFRGIIKNLIQQLYNEIRQPVPPEVESMDDIMLSEFVKDFLRDRRYILVLDDVWSIDAWEAIKCVLPDCNTASRVVLTTRIADVASAPCLGSLGFIYKMEPLSDKESWILFCNRTFQSNDCPPNLEEAAKKILKKCEGLPLAL
HMMPanther: PTHR11017:SF126	3-176	PTHR11017:SF126,OS11G0237600 PROTEIN	GKTTLVKKAYDDAAVKKQFQSHAWITVSQNFQFRGIIKNLIQQLYNEIRQPVPPEVESMDDIMLSEFVKDFLRDRRYILVLDDVWSIDAWEAIKCVLPDCNTASRVVLTTRIADVASAPCLGSLGFIYKMEPLSDKESWILFCNRTFQSNDCPPNLEEAAKKILKKCEGLPLAL
HMMPanther: PTHR11017	3-176	PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	GKTTLVKKAYDDAAVKKQFQSHAWITVSQNFQFRGIIKNLIQQLYNEIRQPVPPEVESMDDIMLSEFVKDFLRDRRYILVLDDVWSIDAWEAIKCVLPDCNTASRVVLTTRIADVASAPCLGSLGFIYKMEPLSDKESWILFCNRTFQSNDCPPNLEEAAKKILKKCEGLPLAL
FPrintScan: PR00364 IPR000767	73-87	DISEASERSIST Disease resistance protein	FLRDRRYILVLDDVW
FPrintScan: PR00364 IPR000767	169-176	DISEASERSIST Disease resistance protein	CEGLPLAL

List of References

S Noir, M C Combes, F Anthony, P Lashermes
Origin, diversity and evolution of NBS-type disease-resistance gene homologues in coffee trees (Coffea L.).
Mol. Genet. Genomics: 2001, 265(4);654-62
PubMed:11459185 WorldCat.org (P p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show