PRGDB00049575 (disease resistance-like protein)

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disease resistance-like protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 24459844 (AJ298886)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Coffea arabica

Comment?

Coffea arabica partial ORF for disease resistance-like protein, clone NBS ArgaC1.

DNA Sequence

GGGGGTGGGAAGACTACCCTGGTGAAAAAAGCCTACGATGACGCTGCAGTGAAGAAACAATTTCAGAGCCATGCCTGGATAACTGTTTCTCAAAATTTTCAGTTCAGGGGCATCATCAAAAACCTGATCCAACAGTTGTACAACGAAATCAGACAGCCGGTCCCTCCCGAAGTGGAATCCATGGATGATATTATGCTGAGTGAATTTGTCAAAGACTTCCTCCGAGACAGAAGGTACATTCTTGTCCTTGATGATGTGTGGAGTATAGATGCCTGGGAAGCTATCAAATGTGTATTGCCTGACTGCAATACTGCTAGTCGTGTTGTATTGACAACACGAATAGCTGATGTAGCTTCTGCGCCCTGTTTAGGATCACTTGGCTTCATCTATAAGATGGAGCCTCTTTCTGATAAAGAGTCTTGGATTCTGTTTTGCAATAGAACATTTCAGAGCAATGACTGTCCTCCAAATCTAGAAGAAGCTGCTAAAAAAATACTGAAAAAATGTGAGGGCCTACCGCTCGCACT


Protein sequences

Name Description Sequence
disease resistance-like protein disease resistance-like protein [Coffea arabica].

GGGKTTLVKKAYDDAAVKKQFQSHAWITVSQNFQFRGIIKNLIQQLYNEIRQPVPPEVESMDDIMLSEFVKDFLRDRRYILVLDDVWSIDAWEAIKCVLPDCNTASRVVLTTRIADVASAPCLGSLGFIYKMEPLSDKESWILFCNRTFQSNDCPPNLEEAAKKILKKCEGLPLAL

Domains

Domain Start-End Description Sequence

superfamily: SSF52540
1-176 SSF52540

GGGKTTLVKKAYDDAAVKKQFQSHAWITVSQNFQFRGIIKNLIQQLYNEIRQPVPPEVESMDDIMLSEFVKDFLRDRRYILVLDDVWSIDAWEAIKCVLPDCNTASRVVLTTRIADVASAPCLGSLGFIYKMEPLSDKESWILFCNRTFQSNDCPPNLEEAAKKILKKCEGLPLAL

HMMPfam: PF00931
IPR002182
1-176 NB-ARC,NBS
NB-ARC

GGGKTTLVKKAYDDAAVKKQFQSHAWITVSQNFQFRGIIKNLIQQLYNEIRQPVPPEVESMDDIMLSEFVKDFLRDRRYILVLDDVWSIDAWEAIKCVLPDCNTASRVVLTTRIADVASAPCLGSLGFIYKMEPLSDKESWILFCNRTFQSNDCPPNLEEAAKKILKKCEGLPLAL

HMMPanther: PTHR11017:SF126
3-176 PTHR11017:SF126,OS11G0237600 PROTEIN

GKTTLVKKAYDDAAVKKQFQSHAWITVSQNFQFRGIIKNLIQQLYNEIRQPVPPEVESMDDIMLSEFVKDFLRDRRYILVLDDVWSIDAWEAIKCVLPDCNTASRVVLTTRIADVASAPCLGSLGFIYKMEPLSDKESWILFCNRTFQSNDCPPNLEEAAKKILKKCEGLPLAL

HMMPanther: PTHR11017
3-176 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GKTTLVKKAYDDAAVKKQFQSHAWITVSQNFQFRGIIKNLIQQLYNEIRQPVPPEVESMDDIMLSEFVKDFLRDRRYILVLDDVWSIDAWEAIKCVLPDCNTASRVVLTTRIADVASAPCLGSLGFIYKMEPLSDKESWILFCNRTFQSNDCPPNLEEAAKKILKKCEGLPLAL

FPrintScan: PR00364
IPR000767
73-87 DISEASERSIST
Disease resistance protein

FLRDRRYILVLDDVW

FPrintScan: PR00364
IPR000767
169-176 DISEASERSIST
Disease resistance protein

CEGLPLAL


List of References

S Noir, M C Combes, F Anthony, P Lashermes
Origin, diversity and evolution of NBS-type disease-resistance gene homologues in coffee trees (Coffea L.).
Mol. Genet. Genomics: 2001, 265(4);654-62
PubMed:11459185 WorldCat.org (P p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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