PRGDB00049576 (disease resistance-like protein)

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disease resistance-like protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 24459840 (AJ298884)
Gene Class N
Domain Type NBS, Others
Gene Species Coffea arabica

Comment?

Coffea arabica partial ORF for disease resistance-like protein, clone NBS ArgaA7.

DNA Sequence

GGGGGTGGGGAAGACGACTCGTGCTAAATCAGTCTACAACAATACAAAAATTGATGAGAATTTTGGCATAAAGAGTTGGGTTTGTGTGGCTAGAGAAATTAAAATAGTGGAGCTGTTCAAATTCATTTTAGAATCGTTGACAAGAACAAAGGTTGAAGTGGATGGTAGGGATGCCATAGTTCAAGAAATTCGAGGAAAACTTGGGGAAAAAAGATTTCTCCTTGTTCTTGATGATGTGTGGAATTGTGAACAAGAATTCTGGAGTGACTTTTTCACCACGTTGTTGGGACTCAGCACAACTAAAGGAAGCTGGTGTGCTCTCACTACGCGTCTAGAACCAGTGGCTAATGCTGTGCCTAGACATCTACAAATGAATGATGGTCCTTATCTCCTAGGAAAGCTATCAGATGATGCATGCTGGTCTATCCTGGAAAAACTGGTAGTTGCAGGGGAAGAAGTACCAAATGAATTGGAAGCATTGAAGAAGCAAATTTTTAAAAAATGTGATGGCCTCCCCCTCGCCCT


Protein sequences

Name Description Sequence
disease resistance-like protein disease resistance-like protein [Coffea arabica].

GVGKTTRAKSVYNNTKIDENFGIKSWVCVAREIKIVELFKFILESLTRTKVEVDGRDAIVQEIRGKLGEKRFLLVLDDVWNCEQEFWSDFFTTLLGLSTTKGSWCALTTRLEPVANAVPRHLQMNDGPYLLGKLSDDACWSILEKLVVAGEEVPNELEALKKQIFKKCDGLPLAL

Domains

Domain Start-End Description Sequence

superfamily: SSF52540
1-175 SSF52540

GVGKTTRAKSVYNNTKIDENFGIKSWVCVAREIKIVELFKFILESLTRTKVEVDGRDAIVQEIRGKLGEKRFLLVLDDVWNCEQEFWSDFFTTLLGLSTTKGSWCALTTRLEPVANAVPRHLQMNDGPYLLGKLSDDACWSILEKLVVAGEEVPNELEALKKQIFKKCDGLPLAL

HMMPfam: PF00931
IPR002182
1-175 NB-ARC,NBS
NB-ARC

GVGKTTRAKSVYNNTKIDENFGIKSWVCVAREIKIVELFKFILESLTRTKVEVDGRDAIVQEIRGKLGEKRFLLVLDDVWNCEQEFWSDFFTTLLGLSTTKGSWCALTTRLEPVANAVPRHLQMNDGPYLLGKLSDDACWSILEKLVVAGEEVPNELEALKKQIFKKCDGLPLAL

FPrintScan: PR00364
IPR000767
66-80 DISEASERSIST
Disease resistance protein

KLGEKRFLLVLDDVW

FPrintScan: PR00364
IPR000767
168-175 DISEASERSIST
Disease resistance protein

CDGLPLAL


List of References

S Noir, M C Combes, F Anthony, P Lashermes
Origin, diversity and evolution of NBS-type disease-resistance gene homologues in coffee trees (Coffea L.).
Mol. Genet. Genomics: 2001, 265(4);654-62
PubMed:11459185 WorldCat.org (P p)





List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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