PRGDB00049577 (disease resistance-like protein)

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disease resistance-like protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 24459838 (AJ298883)
Gene Class N
Domain Type NBS, Others
Gene Species Coffea canephora

Comment?

Coffea canephora partial ORF for disease resistance-like protein, clone CrgaA1.

DNA Sequence

GGGGGTGGGGAAGACGACTCTTGCTAAATCAGTCTACAACAATCCAAAAATTGATGAGAATTTTGGCATAAAGAGTTGGGTTTGTGTGGCTAGAAAAATTGATACAGTGGGGCTGTTCAAACTCATTTTAGAATCGTTGACAAAAACAAAGGTTGAAGTGGATGGTAGGGAAGCCATAGTTCAAGAAGTTCGAGGAAAGCTCAAGGGACAAAGATATTTCCTTGTTCTTGATGATGTGTGGGACCATGAACAAGGATCGTGGGATGACTATTTCAACACTTTGATGGGACTCAACGAAACCAAAGGAAGCTGGTGTCTTCTCACTACTCGTCTAGAATATGTGGCTAATGCTGTGCCTAGAGATTTGCAAATGAATGATCGTCCTTATTTCTTAGGAAAGCTATCAGGTGATGAGTGCTGGTCCATCATAAAAGGAAAGGTGATGAGTGCAGGGGAAGAAGTACCAGAAGAATTGGAAGCACTGAAGGAGCAAATTTTAAGGAGATGCGATGGCCTCCCCCTCGCCCT


Protein sequences

Name Description Sequence
disease resistance-like protein disease resistance-like protein [Coffea canephora].

GVGKTTLAKSVYNNPKIDENFGIKSWVCVARKIDTVGLFKLILESLTKTKVEVDGREAIVQEVRGKLKGQRYFLVLDDVWDHEQGSWDDYFNTLMGLNETKGSWCLLTTRLEYVANAVPRDLQMNDRPYFLGKLSGDECWSIIKGKVMSAGEEVPEELEALKEQILRRCDGLPLAL

Domains

Domain Start-End Description Sequence

HMMPfam: PF00931
IPR002182
1-176 NB-ARC,NBS
NB-ARC

GVGKTTLAKSVYNNPKIDENFGIKSWVCVARKIDTVGLFKLILESLTKTKVEVDGREAIVQEVRGKLKGQRYFLVLDDVWDHEQGSWDDYFNTLMGLNETKGSWCLLTTRLEYVANAVPRDLQMNDRPYFLGKLSGDECWSIIKGKVMSAGEEVPEELEALKEQILRRCDGLPLAL

superfamily: SSF52540
1-176 SSF52540

GVGKTTLAKSVYNNPKIDENFGIKSWVCVARKIDTVGLFKLILESLTKTKVEVDGREAIVQEVRGKLKGQRYFLVLDDVWDHEQGSWDDYFNTLMGLNETKGSWCLLTTRLEYVANAVPRDLQMNDRPYFLGKLSGDECWSIIKGKVMSAGEEVPEELEALKEQILRRCDGLPLAL

FPrintScan: PR00364
IPR000767
66-80 DISEASERSIST
Disease resistance protein

KLKGQRYFLVLDDVW

FPrintScan: PR00364
IPR000767
169-176 DISEASERSIST
Disease resistance protein

CDGLPLAL


List of References

S Noir, M C Combes, F Anthony, P Lashermes
Origin, diversity and evolution of NBS-type disease-resistance gene homologues in coffee trees (Coffea L.).
Mol. Genet. Genomics: 2001, 265(4);654-62
PubMed:11459185 WorldCat.org (P p)





List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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