PRGDB00049616 (NBS-type resistance protein)

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NBS-type resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 29703836 (AY244684)
Gene Class N
Domain Type NBS, Others
Gene Species Gossypium barbadense

Comment?

Gossypium barbadense clone 82-4 NBS-type resistance protein gene, partial cds.

DNA Sequence

GGAGTGGGGAAGACGACTCTTGTGAAAGAAGTTGTCAGACAAGTCAAAGAAGATAAGTTATTCGACTCTGTGGTTATGGCTGTTGTGACTCCTACTCCTGACATAAAAAATATTCAAGACCAAATTGCAGATACGTTGGGATTGACATTTAAGGAGCCGAGTATGAATGGAAGAGCAAGTCGGTTGTGCCAGAGGTTGAAGAAAGAGAAAAAGACTCTTGTTGTTTTAGATGATATTTGGACTAGATTAGACCTGATGGAAGTGGGAATTCCTTTAGGAGATGAGGATCAGGTATGCACCATACTGCTGACATCCAGAGATCGTAATGTTCTGACGAGGCATATGGATGCTAAAAAGAGTTTTCCAGTTGGAGTTTTAGAAGACAAAGAAGCTTGGGATTTCTTCAAGAAGATTGCAGGGGACGGTGTTGAAAGTTCTGACTTGTTACCTATTGCAACTGAGGTAGCTAAAAAATGTGGTGGTCTTCCACTGGCCCTC


Protein sequences

Name Description Sequence
NBS-type resistance protein NBS-type resistance protein [Gossypium barbadense].

GVGKTTLVKEVVRQVKEDKLFDSVVMAVVTPTPDIKNIQDQIADTLGLTFKEPSMNGRASRLCQRLKKEKKTLVVLDDIWTRLDLMEVGIPLGDEDQVCTILLTSRDRNVLTRHMDAKKSFPVGVLEDKEAWDFFKKIAGDGVESSDLLPIATEVAKKCGGLPLAL

Domains

Domain Start-End Description Sequence

superfamily: SSF52540
1-166 SSF52540

GVGKTTLVKEVVRQVKEDKLFDSVVMAVVTPTPDIKNIQDQIADTLGLTFKEPSMNGRASRLCQRLKKEKKTLVVLDDIWTRLDLMEVGIPLGDEDQVCTILLTSRDRNVLTRHMDAKKSFPVGVLEDKEAWDFFKKIAGDGVESSDLLPIATEVAKKCGGLPLAL

HMMPfam: PF00931
IPR002182
1-166 NB-ARC,NBS
NB-ARC

GVGKTTLVKEVVRQVKEDKLFDSVVMAVVTPTPDIKNIQDQIADTLGLTFKEPSMNGRASRLCQRLKKEKKTLVVLDDIWTRLDLMEVGIPLGDEDQVCTILLTSRDRNVLTRHMDAKKSFPVGVLEDKEAWDFFKKIAGDGVESSDLLPIATEVAKKCGGLPLAL

Gene3D: G3DSA:3.40.50.300
1-73 G3DSA:3.40.50.300

GVGKTTLVKEVVRQVKEDKLFDSVVMAVVTPTPDIKNIQDQIADTLGLTFKEPSMNGRASRLCQRLKKEKKTL

FPrintScan: PR00364
IPR000767
66-80 DISEASERSIST
Disease resistance protein

LKKEKKTLVVLDDIW

FPrintScan: PR00364
IPR000767
159-166 DISEASERSIST
Disease resistance protein

CGGLPLAL






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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