PRGDB00049620 (NBS-type resistance protein)

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NBS-type resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 29693078 (AY244675)
Gene Class NL
Domain Type NBS, LRR
Gene Species Gossypium barbadense

Comment?

Gossypium barbadense clone 12-4 NBS-type resistance protein gene, partial cds.

DNA Sequence

GGGGTAGGAAAAACAACCATCATGAAGCACATCCACAATGATCTTTTGAAAGAACAACAATTTGAAAGAGTGATTTGGGTTACTATATCAAAGGAGTTCGATATTGTGAAGTTACAAGATGATATTGCAAGTGCATTGAATGGATATATGCCCAAAGAAGGAAACAAGGTCAGGCGAGCTGCAATCTTATCAGAACTGCTGAAGAAAGTAGGAAAACATGTTCTAATCCTAGATGATGTGTGGGATAAAGTCTCTCTAGAGGAAGTTGGGATCCCCGAGCCGAGTAGCAGCAATGGATGCAAGTTGGTGCTGACAACCCGTGTGGAGCAAGTTTGTAAATATATGGAATGTAAGGTGATAAAAGTGAAGCCCCTTTCAAAAGAAGAGGCATTGACACTATTCTTGAATAAAGTTGGACCAAATATATTGCAAAGTCCAACTTTAATGCCAACTTTGAGGCTTGTTGTCAAGGAATGTGCAGGTCTACCCCTCGCTCTC


Protein sequences

Name Description Sequence
NBS-type resistance protein NBS-type resistance protein [Gossypium barbadense].

GVGKTTIMKHIHNDLLKEQQFERVIWVTISKEFDIVKLQDDIASALNGYMPKEGNKVRRAAILSELLKKVGKHVLILDDVWDKVSLEEVGIPEPSSSNGCKLVLTTRVEQVCKYMECKVIKVKPLSKEEALTLFLNKVGPNILQSPTLMPTLRLVVKECAGLPLAL


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155
1-99 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GVGKTTIMKHIHNDLLKEQQFERVIWVTISKEFDIVKLQDDIASALNGYMPKEGNKVRRAAILSELLKKVGKHVLILDDVWDKVSLEEVGIPEPSSSNG

HMMPfam: PF00931
IPR002182
1-166 NB-ARC,NBS
NB-ARC

GVGKTTIMKHIHNDLLKEQQFERVIWVTISKEFDIVKLQDDIASALNGYMPKEGNKVRRAAILSELLKKVGKHVLILDDVWDKVSLEEVGIPEPSSSNGCKLVLTTRVEQVCKYMECKVIKVKPLSKEEALTLFLNKVGPNILQSPTLMPTLRLVVKECAGLPLAL

superfamily: SSF52540
1-166 SSF52540

GVGKTTIMKHIHNDLLKEQQFERVIWVTISKEFDIVKLQDDIASALNGYMPKEGNKVRRAAILSELLKKVGKHVLILDDVWDKVSLEEVGIPEPSSSNGCKLVLTTRVEQVCKYMECKVIKVKPLSKEEALTLFLNKVGPNILQSPTLMPTLRLVVKECAGLPLAL

Gene3D: G3DSA:3.40.50.300
1-107 G3DSA:3.40.50.300

GVGKTTIMKHIHNDLLKEQQFERVIWVTISKEFDIVKLQDDIASALNGYMPKEGNKVRRAAILSELLKKVGKHVLILDDVWDKVSLEEVGIPEPSSSNGCKLVLTTR

HMMPanther: PTHR23155:SF108
1-99 PTHR23155:SF108,SUBFAMILY NOT NAMED

GVGKTTIMKHIHNDLLKEQQFERVIWVTISKEFDIVKLQDDIASALNGYMPKEGNKVRRAAILSELLKKVGKHVLILDDVWDKVSLEEVGIPEPSSSNG






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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