PRGDB00049658 (YR6)

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YR6
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 7248752 (AF220732)
Gene Class NL
Domain Type NBS, LRR
Gene Species Oryza sativa Japonica Group

Comment?

Oryza sativa NBS-LRR-like protein (YR6) gene, partial cds.

DNA Sequence

GGGGGGGTGGGGAAAACGACACTAGCTCAGAAAATATTCAATGATAAAAAATTAGAAGGGAGATTTGACCATCGTGCCTGGGTTTGTGTCTCCAAGGAGTATTCTATGGTTTCCCTTTTGACACAAGTTCTTAGTAATATGAAAATTCATTATGAACAAAATGAATCAGTTGGGAACCTTCAAAGCAAACTCAAAGCAGGCATTGCAGACAAGAGTTTTTTCCTTGTGTTGGATGATGTATGGCACTATAAAGCATGGGAAGATTTACTAAGAACTCCACTAAATGCGGCAGCCACAGGAATAATTCTAGTAACTACTCGAGATGAAACTATTGCTCGTGTAATTGGGGTGGACCGGACTCATAGAGTTGATTTGATGTCAGCCGATGTAGGATGGGAGTTACTTTGGAGGAGCATGAACATCAAAGAAGAGAAACAAGTGAAAAATCTACGGGACACAGGTATCGAGATTGTCCGCAAATGTGGTGGCCTCCCCCTCACCCT


Protein sequences

Name Description Sequence
NBS-LRR-like protein NBS-LRR-like protein [Oryza sativa (japonica cultivar-group)].

GGVGKTTLAQKIFNDKKLEGRFDHRAWVCVSKEYSMVSLLTQVLSNMKIHYEQNESVGNLQSKLKAGIADKSFFLVLDDVWHYKAWEDLLRTPLNAAATGIILVTTRDETIARVIGVDRTHRVDLMSADVGWELLWRSMNIKEEKQVKNLRDTGIEIVRKCGGLPLTL


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF230
1-148 PTHR23155:SF230,OS11G0674500 PROTEIN

GGVGKTTLAQKIFNDKKLEGRFDHRAWVCVSKEYSMVSLLTQVLSNMKIHYEQNESVGNLQSKLKAGIADKSFFLVLDDVWHYKAWEDLLRTPLNAAATGIILVTTRDETIARVIGVDRTHRVDLMSADVGWELLWRSMNIKEEKQVK

HMMPanther: PTHR23155
1-148 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GGVGKTTLAQKIFNDKKLEGRFDHRAWVCVSKEYSMVSLLTQVLSNMKIHYEQNESVGNLQSKLKAGIADKSFFLVLDDVWHYKAWEDLLRTPLNAAATGIILVTTRDETIARVIGVDRTHRVDLMSADVGWELLWRSMNIKEEKQVK

HMMPfam: PF00931
IPR002182
1-168 NB-ARC,NBS
NB-ARC

GGVGKTTLAQKIFNDKKLEGRFDHRAWVCVSKEYSMVSLLTQVLSNMKIHYEQNESVGNLQSKLKAGIADKSFFLVLDDVWHYKAWEDLLRTPLNAAATGIILVTTRDETIARVIGVDRTHRVDLMSADVGWELLWRSMNIKEEKQVKNLRDTGIEIVRKCGGLPLTL

superfamily: SSF52540
1-168 SSF52540

GGVGKTTLAQKIFNDKKLEGRFDHRAWVCVSKEYSMVSLLTQVLSNMKIHYEQNESVGNLQSKLKAGIADKSFFLVLDDVWHYKAWEDLLRTPLNAAATGIILVTTRDETIARVIGVDRTHRVDLMSADVGWELLWRSMNIKEEKQVKNLRDTGIEIVRKCGGLPLTL

Gene3D: G3DSA:3.40.50.300
2-114 G3DSA:3.40.50.300

GVGKTTLAQKIFNDKKLEGRFDHRAWVCVSKEYSMVSLLTQVLSNMKIHYEQNESVGNLQSKLKAGIADKSFFLVLDDVWHYKAWEDLLRTPLNAAATGIILVTTRDETIARV






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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