PRGDB00049661 (YR1)

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YR1
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 7248745 (AF220728)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Oryza sativa Japonica Group

Comment?

Oryza sativa NBS-LRR-like protein (YR1) gene, partial cds.

DNA Sequence

GGGGGGTTGGGGAAGACGACTCTAACACAGCTTGTCTACAATGATCCAAGAGTAAAGGAGTACTTCCAGTTACGGGTGTGGCTGTGCGTTTCTGAAAATTTTGACGAAATGAAGCTTACCAAGGAAACCATTGAATCAGTTGCCAGTGGGTTCTCATCGGTCACGACCAACATGAACTTGCTTCAAGAAGATCTCTCAAAAAAGCTGGAAGGTAAAAGATTTCTTCTAGTACTTGATGATGTTTGGAATGAGGACCCTGAAAAATGGGACAGATATCGTTGTGCTCTTGTTAGTGGAAGCAATGGAAGCAGAATTGTAGTAACTACACGGAACAAAAATGTTGGGAAACTAATGGGTGGAATGACTCCTTACTTTCTAAAGCAGTTATCTGAAAATGATTGCTGGAACTTGTTCAGGAGCTATGCATTTGCTGATGGTGACTCCAGTTTGCACCCACATTTAGAAATTATAGGCAAGGAAATTGTGAAGAAGTTGAAAGGCCTCCCCCTCGCCCT


Protein sequences

Name Description Sequence
NBS-LRR-like protein NBS-LRR-like protein [Oryza sativa (japonica cultivar-group)].

GGLGKTTLTQLVYNDPRVKEYFQLRVWLCVSENFDEMKLTKETIESVASGFSSVTTNMNLLQEDLSKKLEGKRFLLVLDDVWNEDPEKWDRYRCALVSGSNGSRIVVTTRNKNVGKLMGGMTPYFLKQLSENDCWNLFRSYAFADGDSSLHPHLEIIGKEIVKKLKGLPLAL

Domains

Domain Start-End Description Sequence

HMMPfam: PF00931
IPR002182
1-172 NB-ARC,NBS
NB-ARC

GGLGKTTLTQLVYNDPRVKEYFQLRVWLCVSENFDEMKLTKETIESVASGFSSVTTNMNLLQEDLSKKLEGKRFLLVLDDVWNEDPEKWDRYRCALVSGSNGSRIVVTTRNKNVGKLMGGMTPYFLKQLSENDCWNLFRSYAFADGDSSLHPHLEIIGKEIVKKLKGLPLAL

HMMPanther: PTHR23155:SF147
1-90 PTHR23155:SF147,OS05G0492600 PROTEIN

GGLGKTTLTQLVYNDPRVKEYFQLRVWLCVSENFDEMKLTKETIESVASGFSSVTTNMNLLQEDLSKKLEGKRFLLVLDDVWNEDPEKWD

superfamily: SSF52540
1-172 SSF52540

GGLGKTTLTQLVYNDPRVKEYFQLRVWLCVSENFDEMKLTKETIESVASGFSSVTTNMNLLQEDLSKKLEGKRFLLVLDDVWNEDPEKWDRYRCALVSGSNGSRIVVTTRNKNVGKLMGGMTPYFLKQLSENDCWNLFRSYAFADGDSSLHPHLEIIGKEIVKKLKGLPLAL

HMMPanther: PTHR23155
1-90 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GGLGKTTLTQLVYNDPRVKEYFQLRVWLCVSENFDEMKLTKETIESVASGFSSVTTNMNLLQEDLSKKLEGKRFLLVLDDVWNEDPEKWD

FPrintScan: PR00364
IPR000767
68-82 DISEASERSIST
Disease resistance protein

KLEGKRFLLVLDDVW

FPrintScan: PR00364
IPR000767
165-172 DISEASERSIST
Disease resistance protein

LKGLPLAL






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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