PRGDB00049662 (NBS-LRR-like protein)

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NBS-LRR-like protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 7021464 (AF224493)
Gene Class NL
Domain Type NBS, LRR
Gene Species Oryza sativa Japonica Group

Comment?

Oryza sativa NBS-LRR-like protein gene, partial cds.

DNA Sequence

GGGGGGGTGGGGAAAACGACTCTGGCTAAGCTAGTCTTCAACAACTCAACAGTGTCAAAGCATTTTGACGTTCTGTTATGGGTTTATGTATCTGTTCACTTTGATCAAAATAAGATTATGCAGGAAATGTTGGACTCCTTTTGCGGGGATGAGCATGATGAAATCAAGAAATCGAAGGAGCTTCAACTCCAAGACAAACTTGACTACTTATTGAAGTCAAAACGAGTGCTACTTGTTATGGATGACATGTGGGAGGATAGCACAAAGGAAAAATGGGATGAGCTGTTAAATCCATTGCTTAAAAACGATGTTATGGGGAACAGTGTTCTTGTCACAACTCGTAAACCATCTGTGGCAACAATGATAGAAGCAGCAGATCACATCAACCTGGATGGTTTGAAAAAAGATGACTTTTGGTGTTTGTTCAAGGAATGTGTATTTGGACATGAGAACTATAAAGGAGAACCAAGACTGGAAAAAATTGGGCAGCAGATAGTTGACAAGTTAAAGGGCAACCCCCTCGCCGC


Protein sequences

Name Description Sequence
NBS-LRR-like protein NBS-LRR-like protein [Oryza sativa].

GGVGKTTLAKLVFNNSTVSKHFDVLLWVYVSVHFDQNKIMQEMLDSFCGDEHDEIKKSKELQLQDKLDYLLKSKRVLLVMDDMWEDSTKEKWDELLNPLLKNDVMGNSVLVTTRKPSVATMIEAADHINLDGLKKDDFWCLFKECVFGHENYKGEPRLEKIGQQIVDKLKGNPLAA


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017:SF28
1-176 PTHR11017:SF28

GGVGKTTLAKLVFNNSTVSKHFDVLLWVYVSVHFDQNKIMQEMLDSFCGDEHDEIKKSKELQLQDKLDYLLKSKRVLLVMDDMWEDSTKEKWDELLNPLLKNDVMGNSVLVTTRKPSVATMIEAADHINLDGLKKDDFWCLFKECVFGHENYKGEPRLEKIGQQIVDKLKGNPLAA

HMMPanther: PTHR11017
1-176 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GGVGKTTLAKLVFNNSTVSKHFDVLLWVYVSVHFDQNKIMQEMLDSFCGDEHDEIKKSKELQLQDKLDYLLKSKRVLLVMDDMWEDSTKEKWDELLNPLLKNDVMGNSVLVTTRKPSVATMIEAADHINLDGLKKDDFWCLFKECVFGHENYKGEPRLEKIGQQIVDKLKGNPLAA

HMMPfam: PF00931
IPR002182
1-175 NB-ARC,NBS
NB-ARC

GGVGKTTLAKLVFNNSTVSKHFDVLLWVYVSVHFDQNKIMQEMLDSFCGDEHDEIKKSKELQLQDKLDYLLKSKRVLLVMDDMWEDSTKEKWDELLNPLLKNDVMGNSVLVTTRKPSVATMIEAADHINLDGLKKDDFWCLFKECVFGHENYKGEPRLEKIGQQIVDKLKGNPLA

superfamily: SSF52540
1-175 SSF52540

GGVGKTTLAKLVFNNSTVSKHFDVLLWVYVSVHFDQNKIMQEMLDSFCGDEHDEIKKSKELQLQDKLDYLLKSKRVLLVMDDMWEDSTKEKWDELLNPLLKNDVMGNSVLVTTRKPSVATMIEAADHINLDGLKKDDFWCLFKECVFGHENYKGEPRLEKIGQQIVDKLKGNPLA

Gene3D: G3DSA:3.40.50.300
2-112 G3DSA:3.40.50.300

GVGKTTLAKLVFNNSTVSKHFDVLLWVYVSVHFDQNKIMQEMLDSFCGDEHDEIKKSKELQLQDKLDYLLKSKRVLLVMDDMWEDSTKEKWDELLNPLLKNDVMGNSVLVT






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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