PRGDB00049663 (HcrSC9-0B)

HcrSC9-0B
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	4235645 (AF119041)
Gene Class	Unknown
Domain Type
Gene Species	Solanum lycopersicum
	Comment?

Lycopersicon esculentum haplotype Southern Cross lipoxygenase gene, partial cds; and Hcr9 gene cluster, complete sequence.

DNA Sequence

GCTAAGAACTCATTGTTGTACAGAGCCATACATTATAGCATCTAATAGGCAACTAAGTGCAATGCATCCAATATATAGATTATTATTTCCTCATTTTAGATATACAATGGAGATAAATGGTACAGCTAGAGAAGCACTTATTAATGCAAATGGTGTTATTGAGAGTTCATTTTCCCCTGGCAAGTATTCAATGGAGTTGAGTTCTGTTGCCTATGATCTTCACTGGAGGTTTGATAGAGAAGCACTCCCTGAGGACCTTATTAGTAGGGGATTGGCAGAGGAAAATCCAAATGCACCATATGTATTGAGACTAACAATAGAAGATTATCCTTCTGCTAGTGATGGTTTAGTTTGGGACATACTTAAACAATGGGTAACAAATTATGTCAACCATTATTATCCACAAGCAAAACTCATTGAATCTGATGAAGAACTCCAAGCTTGGTGGTTAGAGATTAAAAATGTTGGACATGGTGACAAGAAAGATGAGCCATGGTGGCCAGAGTTAAAAACTCCAAATGACTTAATTAGTATTGTCACAACAATAATTTGGGTAACTTCTGGCCATCATGCAGCTGTAAACTTTGGCCAATACAGCTATGCAGGCTATTTTCCAAATAGGCCAACAATTGCTAGGTCAAAAATGCCAACTGAAGATCCAACAGATGAAGAATGGGAAGACTTTTTGAACAAACCTGAGGAGGCATTGTTAAAATGCTTCCCTTCACAACTTCAAGCAACAAAAGTAATAGCAGTTTTGGATGTTTTATCAAACCATTCTCCAGATGAAGAGTATATTGGTACAAATATTGAACCTTTTTGGAAAGATGAACCCGTAATTAATGCGGCGTTCGAGGTATTTTCGGGGAAATTGAAGGAGCTTGAAGGGATAATTGATGCCAGAAATGCTGATTGTAATTTGAAGAATAGAAATGGAGCTGGAGTTATGCCTTATGAATTATTGAAACCATTTTCTGAACGTGGAATTACTGGAAAAGGTGTACCTTATAGCATTTCCATTTGA

Protein sequences

Name	Description	Sequence
lipoxygenase	lipoxygenase [Lycopersicon esculentum].	LRTHCCTEPYIIASNRQLSAMHPIYRLLFPHFRYTMEINGTAREALINANGVIESSFSPGKYSMELSSVAYDLHWRFDREALPEDLISRGLAEENPNAPYVLRLTIEDYPSASDGLVWDILKQWVTNYVNHYYPQAKLIESDEELQAWWLEIKNVGHGDKKDEPWWPELKTPNDLISIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKPFSERGITGKGVPYSISI

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR11771:SF2	1-340	PTHR11771:SF2,LIPOXYGENASE	LRTHCCTEPYIIASNRQLSAMHPIYRLLFPHFRYTMEINGTAREALINANGVIESSFSPGKYSMELSSVAYDLHWRFDREALPEDLISRGLAEENPNAPYVLRLTIEDYPSASDGLVWDILKQWVTNYVNHYYPQAKLIESDEELQAWWLEIKNVGHGDKKDEPWWPELKTPNDLISIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKPFSERGITGKGVPYSISI
HMMPanther: PTHR11771 IPR000907	1-340	LipOase Lipoxygenase	LRTHCCTEPYIIASNRQLSAMHPIYRLLFPHFRYTMEINGTAREALINANGVIESSFSPGKYSMELSSVAYDLHWRFDREALPEDLISRGLAEENPNAPYVLRLTIEDYPSASDGLVWDILKQWVTNYVNHYYPQAKLIESDEELQAWWLEIKNVGHGDKKDEPWWPELKTPNDLISIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKPFSERGITGKGVPYSISI
superfamily: SSF48484 IPR013819	1-340	Lipoxygenase Lipoxygenase, C-terminal	LRTHCCTEPYIIASNRQLSAMHPIYRLLFPHFRYTMEINGTAREALINANGVIESSFSPGKYSMELSSVAYDLHWRFDREALPEDLISRGLAEENPNAPYVLRLTIEDYPSASDGLVWDILKQWVTNYVNHYYPQAKLIESDEELQAWWLEIKNVGHGDKKDEPWWPELKTPNDLISIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKPFSERGITGKGVPYSISI
Gene3D: G3DSA:1.20.245.10	1-340	G3DSA:1.20.245.10	LRTHCCTEPYIIASNRQLSAMHPIYRLLFPHFRYTMEINGTAREALINANGVIESSFSPGKYSMELSSVAYDLHWRFDREALPEDLISRGLAEENPNAPYVLRLTIEDYPSASDGLVWDILKQWVTNYVNHYYPQAKLIESDEELQAWWLEIKNVGHGDKKDEPWWPELKTPNDLISIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKPFSERGITGKGVPYSISI
ProfileScan: PS51393 IPR013819	1-340	LIPOXYGENASE_3 Lipoxygenase, C-terminal	LRTHCCTEPYIIASNRQLSAMHPIYRLLFPHFRYTMEINGTAREALINANGVIESSFSPGKYSMELSSVAYDLHWRFDREALPEDLISRGLAEENPNAPYVLRLTIEDYPSASDGLVWDILKQWVTNYVNHYYPQAKLIESDEELQAWWLEIKNVGHGDKKDEPWWPELKTPNDLISIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKPFSERGITGKGVPYSISI
HMMPfam: PF00305 IPR013819	1-323	Lipoxygenase Lipoxygenase, C-terminal	LRTHCCTEPYIIASNRQLSAMHPIYRLLFPHFRYTMEINGTAREALINANGVIESSFSPGKYSMELSSVAYDLHWRFDREALPEDLISRGLAEENPNAPYVLRLTIEDYPSASDGLVWDILKQWVTNYVNHYYPQAKLIESDEELQAWWLEIKNVGHGDKKDEPWWPELKTPNDLISIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKP
PatternScan: PS00081 IPR020834	21-31	LIPOXYGENASE_2 Lipoxygenase, conserved site	MHPIYRLLFPH

List of References

M Parniske, B B Wulff, G Bonnema, C M Thomas, D A Jones, J D Jones
Homologues of the Cf-9 disease resistance gene (Hcr9s) are present at multiple loci on the short arm of tomato chromosome 1.
Mol. Plant Microbe Interact.: 1999, 12(2);93-102
PubMed:9926411 WorldCat.org DOI (P p)

M Parniske, J D Jones
Recombination between diverged clusters of the tomato Cf-9 plant disease resistance gene family.
Proc. Natl. Acad. Sci. U.S.A.: 1999, 96(10);5850-5
PubMed:10318973 WorldCat.org (P p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show