PRGDB00049663 (HcrSC9-0B)
HcrSC9-0B | |
---|---|
Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
GenBank | 4235645 (AF119041) |
Gene Class | Unknown |
Domain Type | |
Gene Species | Solanum lycopersicum |
DNA Sequence
GCTAAGAACTCATTGTTGTACAGAGCCATACATTATAGCATCTAATAGGCAACTAAGTGCAATGCATCCAATATATAGATTATTATTTCCTCATTTTAGATATACAATGGAGATAAATGGTACAGCTAGAGAAGCACTTATTAATGCAAATGGTGTTATTGAGAGTTCATTTTCCCCTGGCAAGTATTCAATGGAGTTGAGTTCTGTTGCCTATGATCTTCACTGGAGGTTTGATAGAGAAGCACTCCCTGAGGACCTTATTAGTAGGGGATTGGCAGAGGAAAATCCAAATGCACCATATGTATTGAGACTAACAATAGAAGATTATCCTTCTGCTAGTGATGGTTTAGTTTGGGACATACTTAAACAATGGGTAACAAATTATGTCAACCATTATTATCCACAAGCAAAACTCATTGAATCTGATGAAGAACTCCAAGCTTGGTGGTTAGAGATTAAAAATGTTGGACATGGTGACAAGAAAGATGAGCCATGGTGGCCAGAGTTAAAAACTCCAAATGACTTAATTAGTATTGTCACAACAATAATTTGGGTAACTTCTGGCCATCATGCAGCTGTAAACTTTGGCCAATACAGCTATGCAGGCTATTTTCCAAATAGGCCAACAATTGCTAGGTCAAAAATGCCAACTGAAGATCCAACAGATGAAGAATGGGAAGACTTTTTGAACAAACCTGAGGAGGCATTGTTAAAATGCTTCCCTTCACAACTTCAAGCAACAAAAGTAATAGCAGTTTTGGATGTTTTATCAAACCATTCTCCAGATGAAGAGTATATTGGTACAAATATTGAACCTTTTTGGAAAGATGAACCCGTAATTAATGCGGCGTTCGAGGTATTTTCGGGGAAATTGAAGGAGCTTGAAGGGATAATTGATGCCAGAAATGCTGATTGTAATTTGAAGAATAGAAATGGAGCTGGAGTTATGCCTTATGAATTATTGAAACCATTTTCTGAACGTGGAATTACTGGAAAAGGTGTACCTTATAGCATTTCCATTTGA
Protein sequences
Name | Description | Sequence |
---|---|---|
lipoxygenase | lipoxygenase [Lycopersicon esculentum]. | LRTHCCTEPYIIASNRQLSAMHPIYRLLFPHFRYTMEINGTAREALINANGVIESSFSPGKYSMELSSVAYDLHWRFDREALPEDLISRGLAEENPNAPYVLRLTIEDYPSASDGLVWDILKQWVTNYVNHYYPQAKLIESDEELQAWWLEIKNVGHGDKKDEPWWPELKTPNDLISIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKPFSERGITGKGVPYSISI |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
HMMPanther: PTHR11771:SF2 | 1-340 | PTHR11771:SF2,LIPOXYGENASE | LRTHCCTEPYIIASNRQLSAMHPIYRLLFPHFRYTMEINGTAREALINANGVIESSFSPGKYSMELSSVAYDLHWRFDREALPEDLISRGLAEENPNAPYVLRLTIEDYPSASDGLVWDILKQWVTNYVNHYYPQAKLIESDEELQAWWLEIKNVGHGDKKDEPWWPELKTPNDLISIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKPFSERGITGKGVPYSISI |
HMMPanther: PTHR11771 IPR000907
|
1-340 | LipOase Lipoxygenase
|
LRTHCCTEPYIIASNRQLSAMHPIYRLLFPHFRYTMEINGTAREALINANGVIESSFSPGKYSMELSSVAYDLHWRFDREALPEDLISRGLAEENPNAPYVLRLTIEDYPSASDGLVWDILKQWVTNYVNHYYPQAKLIESDEELQAWWLEIKNVGHGDKKDEPWWPELKTPNDLISIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKPFSERGITGKGVPYSISI |
superfamily: SSF48484 IPR013819
|
1-340 | Lipoxygenase Lipoxygenase, C-terminal
|
LRTHCCTEPYIIASNRQLSAMHPIYRLLFPHFRYTMEINGTAREALINANGVIESSFSPGKYSMELSSVAYDLHWRFDREALPEDLISRGLAEENPNAPYVLRLTIEDYPSASDGLVWDILKQWVTNYVNHYYPQAKLIESDEELQAWWLEIKNVGHGDKKDEPWWPELKTPNDLISIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKPFSERGITGKGVPYSISI |
Gene3D: G3DSA:1.20.245.10 | 1-340 | G3DSA:1.20.245.10 | LRTHCCTEPYIIASNRQLSAMHPIYRLLFPHFRYTMEINGTAREALINANGVIESSFSPGKYSMELSSVAYDLHWRFDREALPEDLISRGLAEENPNAPYVLRLTIEDYPSASDGLVWDILKQWVTNYVNHYYPQAKLIESDEELQAWWLEIKNVGHGDKKDEPWWPELKTPNDLISIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKPFSERGITGKGVPYSISI |
ProfileScan: PS51393 IPR013819
|
1-340 | LIPOXYGENASE_3 Lipoxygenase, C-terminal
|
LRTHCCTEPYIIASNRQLSAMHPIYRLLFPHFRYTMEINGTAREALINANGVIESSFSPGKYSMELSSVAYDLHWRFDREALPEDLISRGLAEENPNAPYVLRLTIEDYPSASDGLVWDILKQWVTNYVNHYYPQAKLIESDEELQAWWLEIKNVGHGDKKDEPWWPELKTPNDLISIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKPFSERGITGKGVPYSISI |
HMMPfam: PF00305 IPR013819
|
1-323 | Lipoxygenase Lipoxygenase, C-terminal
|
LRTHCCTEPYIIASNRQLSAMHPIYRLLFPHFRYTMEINGTAREALINANGVIESSFSPGKYSMELSSVAYDLHWRFDREALPEDLISRGLAEENPNAPYVLRLTIEDYPSASDGLVWDILKQWVTNYVNHYYPQAKLIESDEELQAWWLEIKNVGHGDKKDEPWWPELKTPNDLISIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKP |
PatternScan: PS00081 IPR020834
|
21-31 | LIPOXYGENASE_2 Lipoxygenase, conserved site
|
MHPIYRLLFPH |
List of References
M Parniske, B B Wulff, G Bonnema, C M Thomas, D A Jones, J D Jones
Homologues of the Cf-9 disease resistance gene (Hcr9s) are present at multiple loci on the short arm of tomato chromosome 1.
Mol. Plant Microbe Interact.: 1999, 12(2);93-102
PubMed:9926411
WorldCat.org
DOI
(P p)
M Parniske, J D Jones
Recombination between diverged clusters of the tomato Cf-9 plant disease resistance gene family.
Proc. Natl. Acad. Sci. U.S.A.: 1999, 96(10);5850-5
PubMed:10318973
WorldCat.org
(P p)
List of Contributions
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