PRGDB00049663 (HcrSC9-0B)
| HcrSC9-0B | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 4235645 (AF119041) |
| Gene Class | Unknown |
| Domain Type | |
| Gene Species | Solanum lycopersicum |
DNA Sequence
GCTAAGAACTCATTGTTGTACAGAGCCATACATTATAGCATCTAATAGGCAACTAAGTGCAATGCATCCAATATATAGATTATTATTTCCTCATTTTAGATATACAATGGAGATAAATGGTACAGCTAGAGAAGCACTTATTAATGCAAATGGTGTTATTGAGAGTTCATTTTCCCCTGGCAAGTATTCAATGGAGTTGAGTTCTGTTGCCTATGATCTTCACTGGAGGTTTGATAGAGAAGCACTCCCTGAGGACCTTATTAGTAGGGGATTGGCAGAGGAAAATCCAAATGCACCATATGTATTGAGACTAACAATAGAAGATTATCCTTCTGCTAGTGATGGTTTAGTTTGGGACATACTTAAACAATGGGTAACAAATTATGTCAACCATTATTATCCACAAGCAAAACTCATTGAATCTGATGAAGAACTCCAAGCTTGGTGGTTAGAGATTAAAAATGTTGGACATGGTGACAAGAAAGATGAGCCATGGTGGCCAGAGTTAAAAACTCCAAATGACTTAATTAGTATTGTCACAACAATAATTTGGGTAACTTCTGGCCATCATGCAGCTGTAAACTTTGGCCAATACAGCTATGCAGGCTATTTTCCAAATAGGCCAACAATTGCTAGGTCAAAAATGCCAACTGAAGATCCAACAGATGAAGAATGGGAAGACTTTTTGAACAAACCTGAGGAGGCATTGTTAAAATGCTTCCCTTCACAACTTCAAGCAACAAAAGTAATAGCAGTTTTGGATGTTTTATCAAACCATTCTCCAGATGAAGAGTATATTGGTACAAATATTGAACCTTTTTGGAAAGATGAACCCGTAATTAATGCGGCGTTCGAGGTATTTTCGGGGAAATTGAAGGAGCTTGAAGGGATAATTGATGCCAGAAATGCTGATTGTAATTTGAAGAATAGAAATGGAGCTGGAGTTATGCCTTATGAATTATTGAAACCATTTTCTGAACGTGGAATTACTGGAAAAGGTGTACCTTATAGCATTTCCATTTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| lipoxygenase | lipoxygenase [Lycopersicon esculentum]. | LRTHCCTEPYIIASNRQLSAMHPIYRLLFPHFRYTMEINGTAREALINANGVIESSFSPGKYSMELSSVAYDLHWRFDREALPEDLISRGLAEENPNAPYVLRLTIEDYPSASDGLVWDILKQWVTNYVNHYYPQAKLIESDEELQAWWLEIKNVGHGDKKDEPWWPELKTPNDLISIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKPFSERGITGKGVPYSISI |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR11771:SF2 | 1-340 | PTHR11771:SF2,LIPOXYGENASE | LRTHCCTEPYIIASNRQLSAMHPIYRLLFPHFRYTMEINGTAREALINANGVIESSFSPGKYSMELSSVAYDLHWRFDREALPEDLISRGLAEENPNAPYVLRLTIEDYPSASDGLVWDILKQWVTNYVNHYYPQAKLIESDEELQAWWLEIKNVGHGDKKDEPWWPELKTPNDLISIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKPFSERGITGKGVPYSISI |
| HMMPanther: PTHR11771 IPR000907
|
1-340 | LipOase Lipoxygenase
|
LRTHCCTEPYIIASNRQLSAMHPIYRLLFPHFRYTMEINGTAREALINANGVIESSFSPGKYSMELSSVAYDLHWRFDREALPEDLISRGLAEENPNAPYVLRLTIEDYPSASDGLVWDILKQWVTNYVNHYYPQAKLIESDEELQAWWLEIKNVGHGDKKDEPWWPELKTPNDLISIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKPFSERGITGKGVPYSISI |
| superfamily: SSF48484 IPR013819
|
1-340 | Lipoxygenase Lipoxygenase, C-terminal
|
LRTHCCTEPYIIASNRQLSAMHPIYRLLFPHFRYTMEINGTAREALINANGVIESSFSPGKYSMELSSVAYDLHWRFDREALPEDLISRGLAEENPNAPYVLRLTIEDYPSASDGLVWDILKQWVTNYVNHYYPQAKLIESDEELQAWWLEIKNVGHGDKKDEPWWPELKTPNDLISIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKPFSERGITGKGVPYSISI |
| Gene3D: G3DSA:1.20.245.10 | 1-340 | G3DSA:1.20.245.10 | LRTHCCTEPYIIASNRQLSAMHPIYRLLFPHFRYTMEINGTAREALINANGVIESSFSPGKYSMELSSVAYDLHWRFDREALPEDLISRGLAEENPNAPYVLRLTIEDYPSASDGLVWDILKQWVTNYVNHYYPQAKLIESDEELQAWWLEIKNVGHGDKKDEPWWPELKTPNDLISIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKPFSERGITGKGVPYSISI |
| ProfileScan: PS51393 IPR013819
|
1-340 | LIPOXYGENASE_3 Lipoxygenase, C-terminal
|
LRTHCCTEPYIIASNRQLSAMHPIYRLLFPHFRYTMEINGTAREALINANGVIESSFSPGKYSMELSSVAYDLHWRFDREALPEDLISRGLAEENPNAPYVLRLTIEDYPSASDGLVWDILKQWVTNYVNHYYPQAKLIESDEELQAWWLEIKNVGHGDKKDEPWWPELKTPNDLISIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKPFSERGITGKGVPYSISI |
| HMMPfam: PF00305 IPR013819
|
1-323 | Lipoxygenase Lipoxygenase, C-terminal
|
LRTHCCTEPYIIASNRQLSAMHPIYRLLFPHFRYTMEINGTAREALINANGVIESSFSPGKYSMELSSVAYDLHWRFDREALPEDLISRGLAEENPNAPYVLRLTIEDYPSASDGLVWDILKQWVTNYVNHYYPQAKLIESDEELQAWWLEIKNVGHGDKKDEPWWPELKTPNDLISIVTTIIWVTSGHHAAVNFGQYSYAGYFPNRPTIARSKMPTEDPTDEEWEDFLNKPEEALLKCFPSQLQATKVIAVLDVLSNHSPDEEYIGTNIEPFWKDEPVINAAFEVFSGKLKELEGIIDARNADCNLKNRNGAGVMPYELLKP |
| PatternScan: PS00081 IPR020834
|
21-31 | LIPOXYGENASE_2 Lipoxygenase, conserved site
|
MHPIYRLLFPH |
List of References
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