PRGDB00049837 (TIR)

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TIR
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 30698911 (NM_105951)
Gene Class T
Domain Type TIR, LRR
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana TIR (TOLL/INTERLEUKIN-1 RECEPTOR-LIKE); transmembrane receptor (TIR) mRNA, complete cds.

DNA Sequence

ATGTCTTCTCATACTGCAACTAAGTATGATGTTTTCCTAAGTTTCAGAGGGCATGACACTCGCCACAACTTCATCAGTTTTCTCTACAAAGAACTGGTTCGAAGGAGCATTCGAACCTTCAAAGACGACAAAGAGCTGGAGAATGGCCAGAGGTTTTCGCCGGAGCTCAAAAGCCCCATCGAGGTGTCAAGATTCGCCGTCGTTGTTGTCTCAGAGAACTATGCTGCGTCTTCTTGGTGTCTCGATGAGCTCGTAACGATCATGGATTTCGAAAAAAAGGGTTCCATCACCGTGATGCCCATCTTCTACGGCGTGGAACCGAATCATGTGAGGTGGCAGACCGGAGTACTCGCTGAACAGTTTAAGAAACATGCGAGTAGAGAAGATCCTGAGAAAGTTCTTAAATGGAGGCAAGCATTGACCAATTTTGCGCAACTCTCCGGCGATTGTTCAGGTGATGATGACTCGAAGCTGGTGGACAAAATTGCTAACGAGATATCAAACAAGAAGACGATTTATGCAACAATATGA


Protein sequences

Name Description Sequence
TIR (TOLL/INTERLEUKIN-1 RECEPTOR-LIKE); transmembrane receptor TIR (TOLL/INTERLEUKIN-1 RECEPTOR-LIKE); transmembrane receptor [Arabidopsis thaliana].

MSSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSGDDDSKLVDKIANEISNKKTIYATI

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
2-148 TIR
Toll/interleukin-1 receptor homology (TIR) domain

SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSG

Gene3D: G3DSA:3.40.50.10140
6-143 G3DSA:3.40.50.10140

ATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNF

ProfileScan: PS50104
IPR000157
7-146 TIR
Toll/interleukin-1 receptor homology (TIR) domain

TKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQL

HMMSmart: SM00255
IPR000157
8-146 TIR
Toll/interleukin-1 receptor homology (TIR) domain

KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQL

HMMPfam: PF01582
IPR000157
11-141 TIR
Toll/interleukin-1 receptor homology (TIR) domain

VFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALT

HMMPanther: PTHR23155
20-169 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

TRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSGDDDSKLVDKIANEISNK

HMMPanther: PTHR23155:SF344
20-169 PTHR23155:SF344

TRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSGDDDSKLVDKIANEISNK






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Analyses

Blast

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