PRGDB00049837 (TIR)

TIR
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	30698911 (NM_105951)
Gene Class	T
Domain Type	TIR, LRR
Gene Species	Arabidopsis thaliana
	Comment?

Arabidopsis thaliana TIR (TOLL/INTERLEUKIN-1 RECEPTOR-LIKE); transmembrane receptor (TIR) mRNA, complete cds.

DNA Sequence

ATGTCTTCTCATACTGCAACTAAGTATGATGTTTTCCTAAGTTTCAGAGGGCATGACACTCGCCACAACTTCATCAGTTTTCTCTACAAAGAACTGGTTCGAAGGAGCATTCGAACCTTCAAAGACGACAAAGAGCTGGAGAATGGCCAGAGGTTTTCGCCGGAGCTCAAAAGCCCCATCGAGGTGTCAAGATTCGCCGTCGTTGTTGTCTCAGAGAACTATGCTGCGTCTTCTTGGTGTCTCGATGAGCTCGTAACGATCATGGATTTCGAAAAAAAGGGTTCCATCACCGTGATGCCCATCTTCTACGGCGTGGAACCGAATCATGTGAGGTGGCAGACCGGAGTACTCGCTGAACAGTTTAAGAAACATGCGAGTAGAGAAGATCCTGAGAAAGTTCTTAAATGGAGGCAAGCATTGACCAATTTTGCGCAACTCTCCGGCGATTGTTCAGGTGATGATGACTCGAAGCTGGTGGACAAAATTGCTAACGAGATATCAAACAAGAAGACGATTTATGCAACAATATGA

Protein sequences

Name	Description	Sequence
TIR (TOLL/INTERLEUKIN-1 RECEPTOR-LIKE); transmembrane receptor	TIR (TOLL/INTERLEUKIN-1 RECEPTOR-LIKE); transmembrane receptor [Arabidopsis thaliana].	MSSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSGDDDSKLVDKIANEISNKKTIYATI

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF52200 IPR000157	2-148	TIR Toll/interleukin-1 receptor homology (TIR) domain	SSHTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSG
Gene3D: G3DSA:3.40.50.10140	6-143	G3DSA:3.40.50.10140	ATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNF
ProfileScan: PS50104 IPR000157	7-146	TIR Toll/interleukin-1 receptor homology (TIR) domain	TKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQL
HMMSmart: SM00255 IPR000157	8-146	TIR Toll/interleukin-1 receptor homology (TIR) domain	KYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQL
HMMPfam: PF01582 IPR000157	11-141	TIR Toll/interleukin-1 receptor homology (TIR) domain	VFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALT
HMMPanther: PTHR23155	20-169	PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	TRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSGDDDSKLVDKIANEISNK
HMMPanther: PTHR23155:SF344	20-169	PTHR23155:SF344	TRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASREDPEKVLKWRQALTNFAQLSGDCSGDDDSKLVDKIANEISNK

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Analyses

Blast

Blast matches against Reference R-Genes. Show