PRGDB00049841 (Pi-ta)

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Pi-ta
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 158836938 (AB364493)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Oryza sativa Indica Group

Comment?

Oryza sativa Indica Group Pi-ta gene, complete cds, strain: 1034.

DNA Sequence

ATGGCGCCGGCGGTCAGTGCATCGCAGGGTGTCATCATGCGGTCCCTGACGAGCAAGCTCGACTCGCTGCTGCTGCAGCCGCCGGAGCCGCCGCCGCCTGCGCAACCGTCGTCGCTGCGGAAGGGGGAGAGGAAGAAGATCCTCCTCCTCAGAGGCGATCTCCGACACCTGCTAGATGACTACTACCTCCTCGTGGAGCCGCCGTCAGACACCGCGCCACCGCCAGACTCGACGGCGGCGTGCTGGGCTAAGGAGGTTCGCGAGCTCTCCTACGACGTCGACGACTTCCTCGACGAGCTAACGACCCAGCTCCTCCACCACCGCGGCGGCGGCGATGGCAGTAGCACTGCTGGTGCCAAGAAGATGATCAGCAGCATGATCGCCCGGCTTCGAGGGGAGCTTAACCGGCGGCGGTGGATCGCCGACGAGGTCACCCTGTTCAGCGCCCGCGTGAAGGAGGCCATTCGCCGCCAGGAGAGCTACCATCTTGGCAGGCGCACCTCGAGCTCGAGGCCGAGAGAAGAAGTCGACGACGACGATCGCGAGGACTCCGCCGGCAACGAACGCCGCCGGTTTCTGTCGCTGACGTTCGGGATGGACGACGCTGCTGTGCACGGCCAGCTCGTTGGTAGGGATATTTCGATGCAAAAGCTCGTCCGGTGGCTGGCCGACGGCGAGCCGAAGCTCAAGGTGGCTTCCATTGTTGGATCCGGAGGTGTTGGCAAGACGACGCTGGCCACAGAATTCTATCGTCTGCATGGCCGGCGGTTGGATGCGCCGTTCGACTGCCGGGCTTTCGTGCGGACGCCCCGGAAGCCTGACATGACGAAGATCCTCACCGACATGCTGTCACAGCTGCGGCCACAACATCAGCATCAGTCTTCGGATGTTTGGGAGGTTGATCGACTCCTTGAAACTATCCGGACGCATTTGCAAGATAAAAGGTACTTCATCATAATTGAAGATTTATGGGCTTCATCAATGTGGGATATTGTTAGCCGTGGTTTGCCTGATAATAATAGTTGCAGTAGAATACTAATAACAACAGAAATTGAACCTGTAGCTTTGGCATGCTGTGGATATAACTCAGAGCACATTATTAAGATTGATCCACTGGGTGATGATGTCTCAAGTCAATTGTTTTTCAGTGGAGTTGTTGGCCAAGGAAATGAATTTCCTGGACATCTTACTGAAGTTTCTCATGACATGATAAAAAAATGTGGTGGCTTGCCACTAGCAATAACTATAACAGCCAGACATTTTAAAAGCCAGCTGTTAGATGGAATGCAGCAATGGAATCACATACAAAAATCATTGACTACTTCCAATTTGAAGAAAAATCCTACTTTGCAGGGGATGAGGCAAGTACTCAACCTTATTTACAATAATCTTCCTCATTGTTTGAAAGCATGTCTGTTATACCTTAGCATCTACAAAGAGGACTACATAATTAGGAAGGCCAACTTGGTGAGGCAATGGATGGCTGAAGGTTTCATCAATTCCATAGAAAATAAAGTCATGGAAGAAGTTGCAGGGAACTATTTTGATGAACTTGTTGGTAGGGGCCTGGTCCAACCAGTAGATGTTAACTGCAAAAATGAGGTATTGTCATGTGTAGTGCACCACATGGTATTAAATTTCATCAGGTGTAAGTCAATAGAGGAGAATTTCAGCATTACATTGGATCATTCTCAGACGACAGTAAGACATGCTGACAAGGTTCGCCGACTCTCGCTTCACTTCAGCAATGCACATGATACAACACCACTAGCAGGTTTGAGACTCTCACAAGTTCGATCGATGGCATTTTTCGGACAAGTCAAGTGTATGCCTTCCATTGCAGATTATAGGCTTCTTCGAGTTCTGATTCTTTGTTTTTGGGCTGATCAAGAGAAAACAAGCTATGACCTCACAAGCATTTCTGAACTGTTACAACTGAGATATCTGAAGATAACAGGTAATATCACAGTTAAACTTCCAGAGAAGATCCAAGGACTACAACACTTGCAGACACTGGAAGCAGATGCAAGAGCAACTGCTGTCCTATTGGATATTGTTCATACACAGTGTTTGTTGCACCTTCGTCTTGTACTACTTGATCTGCTCCCTCACTGTCACAGGTACATCTTCACCAGCATCCCCAAATGGACTGGAAAGCTCAACAATCTCCGCATTTTAAACATTGCAGTCATGCAAATTTCCCAGGATGACCTTGACACTCTCAAAGGACTGGGATCTCTCACTGCTCTTTCGCTGCTTGTTCGAACAGCGCCTGCGCAAAGAATCGTCGCTGCGAATGAGGGGTTCGGGTCTCTCAAGTACTTCATGTTTGTCTGTACAGCACCATGCATGACTTTTGTGGAAGGAGCAATGCCGAGTGTGCAAAGATTAAATCTAAGGTTCAATGCCAACGAGTTCAAGCAGTATGACTCTAAGGAGACAGGGTTGGAACACTTGGTCGCCCTTGCAGAGATCTCTGCAAGAATTGGGGGCACTGATGATGATGAATCAAACAAAACTGAAGTGGAGTCTGCCTTGAGGACTGCAATTCGCAAGCATCCGACGCCGAGCACTCTTATGGTTGATATACAATGGGTGGATTGGATCTTTGGTGCTGAAGGGAGAGACTTGGATGAAGATTTGGCACAACAAGATGATCACGGGTATGGATTTTTCATTCTATTCCCAGGTTACAACTTACAAGGATTATTGAGCTTCTTTCTTTCTCTGCCGTGGCTTCTATCTTTACCTTCTATGCATCTTCAACCTGACTTGATGATTGTTTGA



Domains

Domain Start-End Description Sequence

Seg: seg
20-39 seg

LDSLLLQPPEPPPPAQPSSL

Seg: seg
48-64 seg

LLLRGDLRHLLDDYYLL

HMMPanther: PTHR11017:SF126
57-755 OS11G0237600 PROTEIN,OS11G0237600 PROTEIN

LLDDYYLLVEPPSDTAPPPDSTAACWAKEVRELSYDVDDFLDELTTQLLHHRGGGDGSSTAGAKKMISSMIARLRGELNRRRWIADEVTLFSARVKEAIRRQESYHLGRRTSSSRPREEVDDDDREDSAGNERRRFLSLTFGMDDAAVHGQLVGRDISMQKLVRWLADGEPKLKVASIVGSGGVGKTTLATEFYRLHGRRLDAPFDCRAFVRTPRKPDMTKILTDMLSQLRPQHQHQSSDVWEVDRLLETIRTHLQDKRYFIIIEDLWASSMWDIVSRGLPDNNSCSRILITTEIEPVALACCGYNSEHIIKIDPLGDDVSSQLFFSGVVGQGNEFPGHLTEVSHDMIKKCGGLPLAITITARHFKSQLLDGMQQWNHIQKSLTTSNLKKNPTLQGMRQVLNLIYNNLPHCLKACLLYLSIYKEDYIIRKANLVRQWMAEGFINSIENKVMEEVAGNYFDELVGRGLVQPVDVNCKNEVLSCVVHHMVLNFIRCKSIEENFSITLDHSQTTVRHADKVRRLSLHFSNAHDTTPLAGLRLSQVRSMAFFGQVKCMPSIADYRLLRVLILCFWADQEKTSYDLTSISELLQLRYLKITGNITVKLPEKIQGLQHLQTLEADARATAVLLDIVHTQCLLHLRLVLLDLLPHCHRYIFTSIPKWTGKLNNLRILNIAVMQISQDDLDTLKGLGSLTALSLLVR

HMMPanther: PTHR11017
57-755 FAMILY NOT NAMED,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

LLDDYYLLVEPPSDTAPPPDSTAACWAKEVRELSYDVDDFLDELTTQLLHHRGGGDGSSTAGAKKMISSMIARLRGELNRRRWIADEVTLFSARVKEAIRRQESYHLGRRTSSSRPREEVDDDDREDSAGNERRRFLSLTFGMDDAAVHGQLVGRDISMQKLVRWLADGEPKLKVASIVGSGGVGKTTLATEFYRLHGRRLDAPFDCRAFVRTPRKPDMTKILTDMLSQLRPQHQHQSSDVWEVDRLLETIRTHLQDKRYFIIIEDLWASSMWDIVSRGLPDNNSCSRILITTEIEPVALACCGYNSEHIIKIDPLGDDVSSQLFFSGVVGQGNEFPGHLTEVSHDMIKKCGGLPLAITITARHFKSQLLDGMQQWNHIQKSLTTSNLKKNPTLQGMRQVLNLIYNNLPHCLKACLLYLSIYKEDYIIRKANLVRQWMAEGFINSIENKVMEEVAGNYFDELVGRGLVQPVDVNCKNEVLSCVVHHMVLNFIRCKSIEENFSITLDHSQTTVRHADKVRRLSLHFSNAHDTTPLAGLRLSQVRSMAFFGQVKCMPSIADYRLLRVLILCFWADQEKTSYDLTSISELLQLRYLKITGNITVKLPEKIQGLQHLQTLEADARATAVLLDIVHTQCLLHLRLVLLDLLPHCHRYIFTSIPKWTGKLNNLRILNIAVMQISQDDLDTLKGLGSLTALSLLVR

Seg: seg
67-80 seg

PPSDTAPPPDSTAA

Seg: seg
168-184 seg

SSSRPREEVDDDDREDS

superfamily: SSF52540
185-444 P-loop containing nucleoside triphosphate hydrolases

AGNERRRFLSLTFGMDDAAVHGQLVGRDISMQKLVRWLADGEPKLKVASIVGSGGVGKTTLATEFYRLHGRRLDAPFDCRAFVRTPRKPDMTKILTDMLSQLRPQHQHQSSDVWEVDRLLETIRTHLQDKRYFIIIEDLWASSMWDIVSRGLPDNNSCSRILITTEIEPVALACCGYNSEHIIKIDPLGDDVSSQLFFSGVVGQGNEFPGHLTEVSHDMIKKCGGLPLAITITARHFKSQLLDGMQQWNHIQKSLTTSNL

HMMPfam: PF00931
IPR002182
214-501 NB-ARC,NBS
NB-ARC

SMQKLVRWLADGEPKLKVASIVGSGGVGKTTLATEFYRLHGRRLDAPFDCRAFVRTPRKPDMTKILTDMLSQLRPQHQHQSSDVWEVDRLLETIRTHLQDKRYFIIIEDLWASSMWDIVSRGLPDNNSCSRILITTEIEPVALACCGYNSEHIIKIDPLGDDVSSQLFFSGVVGQGNEFPGHLTEVSHDMIKKCGGLPLAITITARHFKSQLLDGMQQWNHIQKSLTTSNLKKNPTLQGMRQVLNLIYNNLPHCLKACLLYLSIYKEDYIIRKANLVRQWMAEGFINS

FPrintScan: PR00364
IPR000767
231-246 DISEASERSIST
Disease resistance protein

VASIVGSGGVGKTTLA

FPrintScan: PR00364
IPR000767
310-324 DISEASERSIST
Disease resistance protein

HLQDKRYFIIIEDLW

FPrintScan: PR00364
IPR000767
407-421 DISEASERSIST
Disease resistance protein

CGGLPLAITITARHF

superfamily: SSF52058
539-752 L domain-like,LRR

VVHHMVLNFIRCKSIEENFSITLDHSQTTVRHADKVRRLSLHFSNAHDTTPLAGLRLSQVRSMAFFGQVKCMPSIADYRLLRVLILCFWADQEKTSYDLTSISELLQLRYLKITGNITVKLPEKIQGLQHLQTLEADARATAVLLDIVHTQCLLHLRLVLLDLLPHCHRYIFTSIPKWTGKLNNLRILNIAVMQISQDDLDTLKGLGSLTALSL

Seg: seg
691-702 seg

LLHLRLVLLDLL

Gene3D: G3DSA:3.80.10.10
712-752 no description

SIPKWTGKLNNLRILNIAVMQISQDDLDTLKGLGSLTALSL

Seg: seg
903-918 seg

LLSFFLSLPWLLSLPS






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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