PRGDB00049846 (Os12g0565100)

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Os12g0565100
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 115489115 (NM_001073577)
Gene Class NL
Domain Type LRR, NBS, LRR, LRR, Others
Gene Species Oryza sativa Japonica Group

Comment?

Oryza sativa (japonica cultivar-group) Os12g0565100 (Os12g0565100) mRNA, complete cds.

DNA Sequence

ATGGCAAGTGCCTTGACGGGAGTGATGACATCCGTCATCAACAAGCTCACTGCTCTTCTTGGGAAGGAGTACATGAAGTTGAAAGGAGTACAGGGGGAGGTGGAGTTTATGATAGATGAGCTGAGCAGCATGAATGCTCTCCTTCATAGGCTGGCGGAGGAGGACCAACACCTTGATGTGCAAACGAAGGAGTGGCGTAACCAAGTGCGCGAAATGTATTATGACATTGAGGACTGTATCGATGACTTCATGCATCACCTTGGCCATACTGACATTGCTGAGTCTGCAGGGCTTGTCCATAGGATGGCCCAACACCTTAAGACTCTGAGGGTGCGCCACCAAATTGCCAACCAAATCGAGAAGCTCAAAGCACGCGTTGAAGATGCAAGCAAGCGGCGATTGAGGTATAAGCTTGATGAGCGCACCTTCAATCTTAGTACTGCAGGGGCCATTGACCCCCGGTTACCTTCTCTATATGCTGAGTCAGACGGGCTTGTTGGAATTGAACAACCAAGGGATGTGGTTATCAAGTTGCTAACGGAGGGAGAGGGTGCATCATCGCAGAAGCTAAAGGTGATATCCATTGTGGGTCCTGGAGGTCTAGGTAAAACTACACTTGCGAATGAGGTGTTTCGCAAACTAGAGAGCCAGTTCCAGTGTCGAGCTTTTGTTTCTCTGTCACAGCAGCCTGATGTGAAGAAGATTGTAAGAAACATATACTGTCAAGTCAGCCAGCAGGAGTATGGTAACATAGATATATGGGATGAGGAAAAGCTGATAAACGCAACCCGAGAATTCCTAACGAACAAGAGGTACTTTGTCGTCATTGATGATATATGGAGTACTCAAGCATGGAAGACCATAAGATGTGCTTTATTTGTGAATAATTGTGGAAGCAGAATAATGACGACAACACGCAATATGGCAATAGCCAAGTCATGTTGCACTCCTGACCATGATCGTGTCTTTGAAATAATGCCTCTTAGTATAGATAACTCGAAGAGTTTGTTTTTGAAACGAATATTTGGCTCAAAGGATGTGTGCATTCCTCAATTGGATGAGGTTTGTTATGAAATATTGAAAAAATGTGGCGGGTCGCCATTGGCTATTATTACAATAGCTAGCTTATTGGCTAATAAAGCTAATACCAAGGAAGAATGGGAAAGGGTGCGTAATTCTATCGGTTCAACACTGCAAAAAGATCCTGATGTAGAAGAGATGAGAAGGATATTATCCTTGAGCTATGATGATCTTCCCCAACATTTGAAGACATGCTTACTGTATCTAAGCATATTTCCAGAAGATTATGAGATTGAGAGGGATCGACTAGTAGAGAGGTGGGTTGCTGAAGGATTCATTATTACAGAGGGGGGGCATGACTTGAAGGAAATAGGAGACTGTTATTTTAGTGATCTTATCAATAGAAGCATGATTGAACCGGTGAAAATCCAATACAATGGTCGAGTTTTTTCCTGCCGAGTCCATGATATGATTCTTGATCTCCTTACATGCAAGTCAACTGAAGAAAATTTTGCCACCTTCATGGGTGGCCAAAATCAGAAATTAGTGCTACAGGGTAAGGTTCGTCGGCTCTCTCTCAACTATTACACTCAAGATCACATCATGGTTCCATCAACAGCAATCATCACACATTGCCGATCTCTCAGTATTTTTGGGTATGCTGAACAGAAGCCTCCTCTTTCAATGTTTCCAGTTCTTCGTGTACTTGATATAGAAAATGGTGAAGATATGGAAAGCAGCTATACCAAACACATAAGGAAGCTGATTCAGTTGAAGTACCTGCGACTGAATGTAAGAAGCGTAGCTGAACTTCCTGAAAAACTTGGAGAGCTACAACATTTGCAGACTCTTGATCTCAGACGGACAAACATAAGAAAATTGCCAGAGAGCTTCGTTCGTCTGCAAAATTTGACATATTTGCGTGTCAATAATCTGGATTTGCCTGAAGGAATTGGACATCTGCATGCTCTGCAGGAGCTAACAGAGATCAGAATCAGCCAGGACTGCTTGGCATCTTCCTTGTTGGAGCTAAGAAATCTGACGAAGCACACATTGACTACAAAGTTTTCGCCGATAATTTAG


Protein sequences

Name Description Sequence
hypothetical protein Os12g0565100 [Oryza sativa (japonica cultivar-group)].

MASALTGVMTSVINKLTALLGKEYMKLKGVQGEVEFMIDELSSMNALLHRLAEEDQHLDVQTKEWRNQVREMYYDIEDCIDDFMHHLGHTDIAESAGLVHRMAQHLKTLRVRHQIANQIEKLKARVEDASKRRLRYKLDERTFNLSTAGAIDPRLPSLYAESDGLVGIEQPRDVVIKLLTEGEGASSQKLKVISIVGPGGLGKTTLANEVFRKLESQFQCRAFVSLSQQPDVKKIVRNIYCQVSQQEYGNIDIWDEEKLINATREFLTNKRYFVVIDDIWSTQAWKTIRCALFVNNCGSRIMTTTRNMAIAKSCCTPDHDRVFEIMPLSIDNSKSLFLKRIFGSKDVCIPQLDEVCYEILKKCGGSPLAIITIASLLANKANTKEEWERVRNSIGSTLQKDPDVEEMRRILSLSYDDLPQHLKTCLLYLSIFPEDYEIERDRLVERWVAEGFIITEGGHDLKEIGDCYFSDLINRSMIEPVKIQYNGRVFSCRVHDMILDLLTCKSTEENFATFMGGQNQKLVLQGKVRRLSLNYYTQDHIMVPSTAIITHCRSLSIFGYAEQKPPLSMFPVLRVLDIENGEDMESSYTKHIRKLIQLKYLRLNVRSVAELPEKLGELQHLQTLDLRRTNIRKLPESFVRLQNLTYLRVNNLDLPEGIGHLHALQELTEIRISQDCLASSLLELRNLTKHTLTTKFSPII

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155
5-700 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

LTGVMTSVINKLTALLGKEYMKLKGVQGEVEFMIDELSSMNALLHRLAEEDQHLDVQTKEWRNQVREMYYDIEDCIDDFMHHLGHTDIAESAGLVHRMAQHLKTLRVRHQIANQIEKLKARVEDASKRRLRYKLDERTFNLSTAGAIDPRLPSLYAESDGLVGIEQPRDVVIKLLTEGEGASSQKLKVISIVGPGGLGKTTLANEVFRKLESQFQCRAFVSLSQQPDVKKIVRNIYCQVSQQEYGNIDIWDEEKLINATREFLTNKRYFVVIDDIWSTQAWKTIRCALFVNNCGSRIMTTTRNMAIAKSCCTPDHDRVFEIMPLSIDNSKSLFLKRIFGSKDVCIPQLDEVCYEILKKCGGSPLAIITIASLLANKANTKEEWERVRNSIGSTLQKDPDVEEMRRILSLSYDDLPQHLKTCLLYLSIFPEDYEIERDRLVERWVAEGFIITEGGHDLKEIGDCYFSDLINRSMIEPVKIQYNGRVFSCRVHDMILDLLTCKSTEENFATFMGGQNQKLVLQGKVRRLSLNYYTQDHIMVPSTAIITHCRSLSIFGYAEQKPPLSMFPVLRVLDIENGEDMESSYTKHIRKLIQLKYLRLNVRSVAELPEKLGELQHLQTLDLRRTNIRKLPESFVRLQNLTYLRVNNLDLPEGIGHLHALQELTEIRISQDCLASSLLELRNLTKHTLTTKFSPII

HMMPanther: PTHR23155:SF229
5-700 PTHR23155:SF229,OS12G0565100 PROTEIN

LTGVMTSVINKLTALLGKEYMKLKGVQGEVEFMIDELSSMNALLHRLAEEDQHLDVQTKEWRNQVREMYYDIEDCIDDFMHHLGHTDIAESAGLVHRMAQHLKTLRVRHQIANQIEKLKARVEDASKRRLRYKLDERTFNLSTAGAIDPRLPSLYAESDGLVGIEQPRDVVIKLLTEGEGASSQKLKVISIVGPGGLGKTTLANEVFRKLESQFQCRAFVSLSQQPDVKKIVRNIYCQVSQQEYGNIDIWDEEKLINATREFLTNKRYFVVIDDIWSTQAWKTIRCALFVNNCGSRIMTTTRNMAIAKSCCTPDHDRVFEIMPLSIDNSKSLFLKRIFGSKDVCIPQLDEVCYEILKKCGGSPLAIITIASLLANKANTKEEWERVRNSIGSTLQKDPDVEEMRRILSLSYDDLPQHLKTCLLYLSIFPEDYEIERDRLVERWVAEGFIITEGGHDLKEIGDCYFSDLINRSMIEPVKIQYNGRVFSCRVHDMILDLLTCKSTEENFATFMGGQNQKLVLQGKVRRLSLNYYTQDHIMVPSTAIITHCRSLSIFGYAEQKPPLSMFPVLRVLDIENGEDMESSYTKHIRKLIQLKYLRLNVRSVAELPEKLGELQHLQTLDLRRTNIRKLPESFVRLQNLTYLRVNNLDLPEGIGHLHALQELTEIRISQDCLASSLLELRNLTKHTLTTKFSPII

superfamily: SSF52540
148-401 SSF52540

AGAIDPRLPSLYAESDGLVGIEQPRDVVIKLLTEGEGASSQKLKVISIVGPGGLGKTTLANEVFRKLESQFQCRAFVSLSQQPDVKKIVRNIYCQVSQQEYGNIDIWDEEKLINATREFLTNKRYFVVIDDIWSTQAWKTIRCALFVNNCGSRIMTTTRNMAIAKSCCTPDHDRVFEIMPLSIDNSKSLFLKRIFGSKDVCIPQLDEVCYEILKKCGGSPLAIITIASLLANKANTKEEWERVRNSIGSTLQKD

Gene3D: G3DSA:3.40.50.300
167-312 G3DSA:3.40.50.300

GIEQPRDVVIKLLTEGEGASSQKLKVISIVGPGGLGKTTLANEVFRKLESQFQCRAFVSLSQQPDVKKIVRNIYCQVSQQEYGNIDIWDEEKLINATREFLTNKRYFVVIDDIWSTQAWKTIRCALFVNNCGSRIMTTTRNMAIAK

HMMPfam: PF00931
IPR002182
173-455 NB-ARC,NBS
NB-ARC

DVVIKLLTEGEGASSQKLKVISIVGPGGLGKTTLANEVFRKLESQFQCRAFVSLSQQPDVKKIVRNIYCQVSQQEYGNIDIWDEEKLINATREFLTNKRYFVVIDDIWSTQAWKTIRCALFVNNCGSRIMTTTRNMAIAKSCCTPDHDRVFEIMPLSIDNSKSLFLKRIFGSKDVCIPQLDEVCYEILKKCGGSPLAIITIASLLANKANTKEEWERVRNSIGSTLQKDPDVEEMRRILSLSYDDLPQHLKTCLLYLSIFPEDYEIERDRLVERWVAEGFIIT

FPrintScan: PR00364
IPR000767
192-207 DISEASERSIST
Disease resistance protein

VISIVGPGGLGKTTLA

FPrintScan: PR00364
IPR000767
266-280 DISEASERSIST
Disease resistance protein

FLTNKRYFVVIDDIW

FPrintScan: PR00364
IPR000767
363-377 DISEASERSIST
Disease resistance protein

CGGSPLAIITIASLL

Gene3D: G3DSA:3.40.50.300
386-446 G3DSA:3.40.50.300

EWERVRNSIGSTLQKDPDVEEMRRILSLSYDDLPQHLKTCLLYLSIFPEDYEIERDRLVER

superfamily: SSF52058
477-673 SSF52058,LRR

MIEPVKIQYNGRVFSCRVHDMILDLLTCKSTEENFATFMGGQNQKLVLQGKVRRLSLNYYTQDHIMVPSTAIITHCRSLSIFGYAEQKPPLSMFPVLRVLDIENGEDMESSYTKHIRKLIQLKYLRLNVRSVAELPEKLGELQHLQTLDLRRTNIRKLPESFVRLQNLTYLRVNNLDLPEGIGHLHALQELTEIRIS

Gene3D: G3DSA:3.80.10.10
562-689 G3DSA:3.80.10.10

EQKPPLSMFPVLRVLDIENGEDMESSYTKHIRKLIQLKYLRLNVRSVAELPEKLGELQHLQTLDLRRTNIRKLPESFVRLQNLTYLRVNNLDLPEGIGHLHALQELTEIRISQDCLASSLLELRNLTK

FPrintScan: PR00364
IPR000767
616-632 DISEASERSIST
Disease resistance protein

GELQHLQTLDLRRTNIR


List of References

Hajime Ohyanagi, Tsuyoshi Tanaka, Hiroaki Sakai, Yasumasa Shigemoto, Kaori Yamaguchi, Takuya Habara, Yasuyuki Fujii, Baltazar A Antonio, Yoshiaki Nagamura, Tadashi Imanishi, Kazuho Ikeo, Takeshi Itoh, Takashi Gojobori, Takuji Sasaki
The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information.
Nucleic Acids Res.: 2006, 34(Database issue);D741-4
PubMed:16381971 WorldCat.org DOI (I p)


The map-based sequence of the rice genome.
Nature: 2005, 436(7052);793-800
PubMed:16100779 WorldCat.org DOI (I p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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