PRGDB00049848 (Os12g0552900)
| Os12g0552900 | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 115488997 (NM_001073518) |
| Gene Class | NL |
| Domain Type | NBS, LRR, Others |
| Gene Species | Oryza sativa Japonica Group |
DNA Sequence
ATGAACGTTGCCACAGGGGCAATGAACACCCTACTCCCCAAGCTTGGGGAGCTGCTGGTAGGCGAATACAAGCTACAAAAGGGTGTCAAGGGAGAGATCGAAGAACTTGAGAAAGAGCTGACAAGTATGACCGCAGCCCTCCACAAGGTGGCTGAGACGCCTGCAGATAAACTTGATAAGCTGGCGAAGATCTGGGCCAGCGATGTCAGGGAGCTGTCTTACGACATCGAAGATGCCATCGACACCTTCATGATAAAGGGCAAGGGGCATGAACTTGCCACGAGCTTCAAGAAGGTCACCAATTTGTTCAACAAGTTCAAAACTAACCATCAGATTCACGGTGTCATCAAAGATATCATGGACCAGGTCAAGAAGGTCAGCGAGCGTCGTAGTAGGTACATAGTCGACGACATCGCTGCCAGACCAACTATTGTGGATGTTGATCCTCGCCTAGAAGCTATGTACCGGAAGGCAACAGAACTCGTTGGCATTAATGAGCCAAAAAGTGAGCTAACTAAGCGACTCTTGGAACATGACTACTCATCCAGGCAGCAATCAAATATAATTTCTATTGTTGGATTCGGAGGCTTGGGAAAGACAACTCTTGCCAATTCATTACTCCAGGAGCTTGAGGCAAAATTTGATTGCCATTTTTTTGTTTCGGTATCCTTGAAACCTGATATAAACAAGATTCTCAAAAGTATTCTTCCCCAACTTGACAAGAAAAGGTATGCCCACATAAATGAAGCATGGGAAACGAAGCAGTTCATTGATGAAATTCAAGACTTCCTCAAGAATAAAAGGTTCTTGTGCGTGATTGATGATGTTTGGGAAAAATCAGCGTGGGATGATATCAAACTTGCTGTGCAAGATGCTAAACTTGGTAGCAAGATAATTGTAACCACACGAAACATGGTCGTTGCTGAACATGCAGGTGGTGGTGTTTATGAAATGAAACCCTTATCTAATGATGATTCCAGACAATTGTTCTGCAAACGAATATTTGACTCTAACGATGACTGTCCAGGTGATTTGTGTGGTGTCACTGAGAAAATTTTGAAGAAATGCGGTGGTGTACCGCTAGCCATCATTACTACAGCATGCCTACTTGCTAGCAAACCAAGGAATTCAGAGGAATGGGACAAGGTCAATAAGTCTATCAGTTTGGGGCTTGAGAACAACCTTGATGTGGACAACATGCGGAAGATATTAAGCCTCAGTTACAACGATCTACCTTTTCATTTGAAGACTTGCTTGTTGTCTCTAAGCAAATATCCTGAGGATGAGCTAATTAGAAAAGATGTTTTGATATGGGGTTGGTTAGCAGAGGGTTTTATTACAGATGAAACACGACTTGCAGGGACAAGCTTGCAGGAGATTGGAGAGAGCTACTTCAGCGAGCTCATCAATCGAAGCTTGATCCAGCCGATGGATACTTACTTTCAATACGAAGATGGTAAGGTACATGAGTGCAGAGTACATGACATGGTGCTTGAGCTAATAAATCAGCTGTCAGCGGAAGAAGATTTTGTTACAACGTATTTATCAGATGGTCAACAAGCAGGTAAATGTACATGTACAACACAGAAGAAGAAGAAGATTCACCGACTCTCTCTCCATAACAGCAACAAATCTTATGCCTCACCAGAAGCAAGAGAACAATTGTCCAAAGTAAGGTCACTCACTATCTTCGGCAAGGTCGACTCGATACCACCCTTGTCGAGCTTTCATGTCCTGCGTGTGTTGCAGATTGAGGACTGCAGTGGTATGGGCAAGAACCATTTTAGTGATCTTGGCAAGCTACGCCTCCTAAGATTTATGCGTCTAGGGTGCTATAGTGCCACCGAGCTCCCTGAAAGCATTGGAAAACTAGAATCTCTCGAAACCCTGGACATAAGAGGTGCTAGATCAAGAACACCATATTATTCTTTTAAATCTCCTAAGGTAGTGTTTCCAATGTCTTTTGTCAAACTAAGGAAACTATTGCGGCTATTTGCTGGCGAAGTGAAGTTGGCGCAAGGTCTGATGCTAGGAAATATGAAATCTTTACAGGAGCTTGAAGTAGAAGCCACACCGGAGGTAATAAAAGAGATTGGTTATTTGAAAGAGCTAAGGACTCTTAGGATCATTGTGAACAGTCAAATCAGTGAGACATTAGAGTTAGTGGAATCCATTCAAACATCTATAAAAAGGCTCACCAATTTGCAAGACCTGGATTTGAGACTAAGTGGTGTACGAGAAACCATAGACATGCAACAGATTCCTTCCGGCCTCCAAAGGTTGTTCATGTTCCGTTTGGACATGGAGGCATTCCCATGTTGGATCAATTCGTCAATGCTCTCCCGCCTCACCGCCTTATCCATTTTGCTGAAGTCTGAATATCTCCAGCCTGACCACCTTGATCGCCTCGCTAAGCTTCCATCTCTTCGTTTTCTGAGGCTAGAATTAGAAGGTGATCCGTTTCGGCTGAAACAACTCACTATCCACAGAGGTGCATGTGCATTCCGGAGTTTAAAATATTTTCACCTTTATAGCTACATGATGCCATCGTTTCAACCAGGAGCTATGCCTCACCTTGAAAGGCTTTGTCTTCTGATTATGACTTTTATAGTGAGGGGTGACTTGAATGATTTAGGTTTGGAGAACCTCCACTCCCTTCGTCATGTAACCATTCATTCCTGTAATGACGAAACCAAGGCTGTTGTTAAAGAGGCACTTAAGGACTGTCCTAATCAAGCAGCTCTCGAATTATACTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| hypothetical protein | Os12g0552900 [Oryza sativa (japonica cultivar-group)]. | MNVATGAMNTLLPKLGELLVGEYKLQKGVKGEIEELEKELTSMTAALHKVAETPADKLDKLAKIWASDVRELSYDIEDAIDTFMIKGKGHELATSFKKVTNLFNKFKTNHQIHGVIKDIMDQVKKVSERRSRYIVDDIAARPTIVDVDPRLEAMYRKATELVGINEPKSELTKRLLEHDYSSRQQSNIISIVGFGGLGKTTLANSLLQELEAKFDCHFFVSVSLKPDINKILKSILPQLDKKRYAHINEAWETKQFIDEIQDFLKNKRFLCVIDDVWEKSAWDDIKLAVQDAKLGSKIIVTTRNMVVAEHAGGGVYEMKPLSNDDSRQLFCKRIFDSNDDCPGDLCGVTEKILKKCGGVPLAIITTACLLASKPRNSEEWDKVNKSISLGLENNLDVDNMRKILSLSYNDLPFHLKTCLLSLSKYPEDELIRKDVLIWGWLAEGFITDETRLAGTSLQEIGESYFSELINRSLIQPMDTYFQYEDGKVHECRVHDMVLELINQLSAEEDFVTTYLSDGQQAGKCTCTTQKKKKIHRLSLHNSNKSYASPEAREQLSKVRSLTIFGKVDSIPPLSSFHVLRVLQIEDCSGMGKNHFSDLGKLRLLRFMRLGCYSATELPESIGKLESLETLDIRGARSRTPYYSFKSPKVVFPMSFVKLRKLLRLFAGEVKLAQGLMLGNMKSLQELEVEATPEVIKEIGYLKELRTLRIIVNSQISETLELVESIQTSIKRLTNLQDLDLRLSGVRETIDMQQIPSGLQRLFMFRLDMEAFPCWINSSMLSRLTALSILLKSEYLQPDHLDRLAKLPSLRFLRLELEGDPFRLKQLTIHRGACAFRSLKYFHLYSYMMPSFQPGAMPHLERLCLLIMTFIVRGDLNDLGLENLHSLRHVTIHSCNDETKAVVKEALKDCPNQAALELY |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52540 | 144-395 | SSF52540 | IVDVDPRLEAMYRKATELVGINEPKSELTKRLLEHDYSSRQQSNIISIVGFGGLGKTTLANSLLQELEAKFDCHFFVSVSLKPDINKILKSILPQLDKKRYAHINEAWETKQFIDEIQDFLKNKRFLCVIDDVWEKSAWDDIKLAVQDAKLGSKIIVTTRNMVVAEHAGGGVYEMKPLSNDDSRQLFCKRIFDSNDDCPGDLCGVTEKILKKCGGVPLAIITTACLLASKPRNSEEWDKVNKSISLGLENNL |
| Gene3D: G3DSA:3.40.50.300 | 163-309 | G3DSA:3.40.50.300 | GINEPKSELTKRLLEHDYSSRQQSNIISIVGFGGLGKTTLANSLLQELEAKFDCHFFVSVSLKPDINKILKSILPQLDKKRYAHINEAWETKQFIDEIQDFLKNKRFLCVIDDVWEKSAWDDIKLAVQDAKLGSKIIVTTRNMVVAE |
| HMMPfam: PF00931 IPR002182
|
168-449 | NB-ARC,NBS NB-ARC
|
KSELTKRLLEHDYSSRQQSNIISIVGFGGLGKTTLANSLLQELEAKFDCHFFVSVSLKPDINKILKSILPQLDKKRYAHINEAWETKQFIDEIQDFLKNKRFLCVIDDVWEKSAWDDIKLAVQDAKLGSKIIVTTRNMVVAEHAGGGVYEMKPLSNDDSRQLFCKRIFDSNDDCPGDLCGVTEKILKKCGGVPLAIITTACLLASKPRNSEEWDKVNKSISLGLENNLDVDNMRKILSLSYNDLPFHLKTCLLSLSKYPEDELIRKDVLIWGWLAEGFITDE |
| FPrintScan: PR00364 IPR000767
|
188-203 | DISEASERSIST Disease resistance protein
|
IISIVGFGGLGKTTLA |
| HMMPanther: PTHR11017 | 188-815 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | IISIVGFGGLGKTTLANSLLQELEAKFDCHFFVSVSLKPDINKILKSILPQLDKKRYAHINEAWETKQFIDEIQDFLKNKRFLCVIDDVWEKSAWDDIKLAVQDAKLGSKIIVTTRNMVVAEHAGGGVYEMKPLSNDDSRQLFCKRIFDSNDDCPGDLCGVTEKILKKCGGVPLAIITTACLLASKPRNSEEWDKVNKSISLGLENNLDVDNMRKILSLSYNDLPFHLKTCLLSLSKYPEDELIRKDVLIWGWLAEGFITDETRLAGTSLQEIGESYFSELINRSLIQPMDTYFQYEDGKVHECRVHDMVLELINQLSAEEDFVTTYLSDGQQAGKCTCTTQKKKKIHRLSLHNSNKSYASPEAREQLSKVRSLTIFGKVDSIPPLSSFHVLRVLQIEDCSGMGKNHFSDLGKLRLLRFMRLGCYSATELPESIGKLESLETLDIRGARSRTPYYSFKSPKVVFPMSFVKLRKLLRLFAGEVKLAQGLMLGNMKSLQELEVEATPEVIKEIGYLKELRTLRIIVNSQISETLELVESIQTSIKRLTNLQDLDLRLSGVRETIDMQQIPSGLQRLFMFRLDMEAFPCWINSSMLSRLTALSILLKSEYLQPDHLDRLAKLPSLRFLRLE |
| FPrintScan: PR00364 IPR000767
|
263-277 | DISEASERSIST Disease resistance protein
|
FLKNKRFLCVIDDVW |
| FPrintScan: PR00364 IPR000767
|
356-370 | DISEASERSIST Disease resistance protein
|
CGGVPLAIITTACLL |
| superfamily: SSF52058 | 492-918 | SSF52058,LRR | RVHDMVLELINQLSAEEDFVTTYLSDGQQAGKCTCTTQKKKKIHRLSLHNSNKSYASPEAREQLSKVRSLTIFGKVDSIPPLSSFHVLRVLQIEDCSGMGKNHFSDLGKLRLLRFMRLGCYSATELPESIGKLESLETLDIRGARSRTPYYSFKSPKVVFPMSFVKLRKLLRLFAGEVKLAQGLMLGNMKSLQELEVEATPEVIKEIGYLKELRTLRIIVNSQISETLELVESIQTSIKRLTNLQDLDLRLSGVRETIDMQQIPSGLQRLFMFRLDMEAFPCWINSSMLSRLTALSILLKSEYLQPDHLDRLAKLPSLRFLRLELEGDPFRLKQLTIHRGACAFRSLKYFHLYSYMMPSFQPGAMPHLERLCLLIMTFIVRGDLNDLGLENLHSLRHVTIHSCNDETKAVVKEALKDCPNQAALELY |
| Gene3D: G3DSA:3.80.10.10 | 532-761 | G3DSA:3.80.10.10 | KKIHRLSLHNSNKSYASPEAREQLSKVRSLTIFGKVDSIPPLSSFHVLRVLQIEDCSGMGKNHFSDLGKLRLLRFMRLGCYSATELPESIGKLESLETLDIRGARSRTPYYSFKSPKVVFPMSFVKLRKLLRLFAGEVKLAQGLMLGNMKSLQELEVEATPEVIKEIGYLKELRTLRIIVNSQISETLELVESIQTSIKRLTNLQDLDLRLSGVRETIDMQQIPSGLQRL |
| FPrintScan: PR00364 IPR000767
|
622-638 | DISEASERSIST Disease resistance protein
|
GKLESLETLDIRGARSR |
| Gene3D: G3DSA:3.80.10.10 | 778-917 | G3DSA:3.80.10.10 | SMLSRLTALSILLKSEYLQPDHLDRLAKLPSLRFLRLELEGDPFRLKQLTIHRGACAFRSLKYFHLYSYMMPSFQPGAMPHLERLCLLIMTFIVRGDLNDLGLENLHSLRHVTIHSCNDETKAVVKEALKDCPNQAALEL |
List of References
Hajime Ohyanagi, Tsuyoshi Tanaka, Hiroaki Sakai, Yasumasa Shigemoto, Kaori Yamaguchi, Takuya Habara, Yasuyuki Fujii, Baltazar A Antonio, Yoshiaki Nagamura, Tadashi Imanishi, Kazuho Ikeo, Takeshi Itoh, Takashi Gojobori, Takuji Sasaki
The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information.
Nucleic Acids Res.: 2006, 34(Database issue);D741-4
PubMed:16381971
WorldCat.org
DOI
(I p)
The map-based sequence of the rice genome.
Nature: 2005, 436(7052);793-800
PubMed:16100779
WorldCat.org
DOI
(I p)
List of Contributions
There has not been any contribution yet.
