PRGDB00049849 (Os12g0516300)
| Os12g0516300 | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 115488803 (NM_001073421) |
| Gene Class | NL |
| Domain Type | NBS, LRR, Others |
| Gene Species | Oryza sativa Japonica Group |
DNA Sequence
ATGAACATCGCCACAGGGGCAATGAACACCCTCCTCCCCAAGCTTGGGGAGCTGCTGGTTGGCGAATACAAGCTGCAAAAGGGTGTCAAGGGAGAGATCGAAGAACTTGAGAAAGAGTTGAAAGGTATGACCGCAGCACTCCACAAGGTGGCTGAGACACCTGTGGATCAACTTGACCAGCAGGTCAAGATCTGGGCCAGCGAGGTGAGAGAGCTATCTTACGACATCGAGGATGCCATCGACACCTTCATGTTAAAGTGCAAGGGGCATGAACCTGCCACGAGCTTCAAGAAGGTCACCAATTTGTTCAACAAGTTCAAAACCAACCATCAGATCCACGGTGTCATGAAAGACATCATGGACCAGGTCAAGAAGGTCAGCGAACGTCGTGATAGGTACATAGTCGACGACAATGCTGCCAGGCCAACTGTTGTGGATGTTGATTCTCGCCTAGAAGCTATGTACCGAAAGGCGACAGAACTCATTGGCATTAGCAAGCCAAAAAATGAGCTAACTAAGCAACTCTTGGAATATGACGGCTCATCCAGCCAACAATCAAATATAATTTCTATTGTTGGATTCGGAGGCTTAGGAAAGACAACTCTTGCCAATTCATTATTTCAGGAGCTTAAGGCAAAATTTGACAGCTATTGTTTTGTTTCGGTGTCCTTGAATCCTGATATAAACAAGATTCTCAAGAACATTCTTCTCCAACTTGATGAGAAAATGTATTCCCACATAGATGAAACATGGGAAACGAAGCAGCTCATCGACAAAATTAGAGACTTCCTCAACAATAGAAGGTTCTTGTGCGTGATTGATGATGTATGGAAAAAATCAGCGTGGGATACTATCAAACTTGCTGTGCAAGATGCTAAACTTGGTAGCAAAATAATTGTAACCACGCGAAACAAGGTCGTTGCAGAACATGCAGGCAGTGGTGTTTATGAAATGAAACCCTTATCTGATGATGATTCCAGACAATTGTTCTGCAAACGAATATTTGACTCTAACGATGACTGTCCTGCTGATTTGTGTGGTGTCACTGAGAAAATTTTGAAGAAATGTGGTGGTGTACCGCTAGCAATCATCACTACAGCATGCCTACTTGCTAGCAAACCAAGGAATTCAGAGGAATGGGACAAGGTCAATAAGTCTATCAGTTTGGGGCTTGAGAACAACCTTGATGTGGACAAGATGCGGAAGATATTAAGCCTCAGTTACAACGATCTACCTTTTCATTTGAAGACTTGCTTGTTGTCTCTAAGCAAATATCCTGAGGATGAACTAATTAGAAAAGATGTTTTGATATGGGGTTGGTTAGCTGAGGGTTTTATTACAGATGAAACACGACCTGTAGGGACAAGCTTGCAGGAGATTGGAGAGAGCTACTTCAACGAGCTCATCAATCGAAGCTTGATCCAGCCGATGAGTGAGGACAATTTTTGGGATGAAGATGGTAAGGTGCATGTTTTTTGGGATGAAGATGGTAAGGTGCATGCATGCAAAGTACATGACATGGTGCTTGAGCTAATAAATCAGCTGTCAGTAGAAGAAGATTTTGTTACAACGTATTTATCAGATGGTCAACAAACAGGTAAACATACATGTACAGCACAAAAGAAGAAGATTCGCCGATTATCTCTCCATAACAGCAATAAATCCTATGCCTCACCAGAAGCAAGAGAACAATTGTCCAAAGTAAGGTCCATTACTATCTTCGGCAAGGTCGACTCGATACCACCCTTGTCGAGCTTTCATGTCCTGCGTGTGTTGCAGCTTGAGGACTGCAGTGGAATGGACAAGAACCATCTTAATCATCTCGATAAGCTACGCCTCCTAAGATTTCTGCGTCTAGGGCACTATAGTGCCACTGAGCTCCCTGAAAGCATTGGGAAACTGGAATCTCTCGAAACCTTGGACATAAGAGGTGCACGTAAACCAAGTTCTTTTAAATCTCATAAGGTACTGTTTCCAATGTCTTTTGCCAAACTAAGGAAACTGTTGCGGCTATATGCTGGCAGAGTGAAGCTGGCGCAAGGTCTGATGCTGGGGAATATGAAATCTTTACAGGAGCTTGTAATAGAAGCTACCCGAAAGGTAATAAAAGAGATTGGTAATTTGACAGAGCTAAGGACTCTTAGGATCGTTTTCGGTAGTGAAAAAACATTTGAGTTAAAGGAATCCATTCAAACGTCTATACAAAGGCTCACCAATTTGCAAGACCTAGATTTGAGAAATAATATTAGTTTTGAAGAAATCATAGACATGCAACAGGTTCCTTCCGGTCTCCAAAGGTTGTTCATGCCCGATTCGTTTATGAAAGCATTCCCATGTTGGATCAATTCATTGATGCTCTCCCACCTCACCACCTTATCCATTTGTCTGGATTTCGAATATCTCCAGTCTGACCACCTTGATCGCCTCGCTGAGCTTCCATCTCTTCGCTTTCTCAGGCTACAGTTAGCATTTGTTTCGGAACAACTACAGGAAAAGCTCACTATCCACAGAGGTGCATGTGCATTTCGGAGTTTAAAAGATTTTCAGTTTTATAGCTCCATGATGCCATCGTTTCAACCAGGAGCTATGCCCCACCTTGAAAGGCTTTATCTTTCTATTTGGACCAGACTAAGGAGGGGTGGCTTAAATGATTTAGGTTTGGAGAATCTCTACTCCCTTCGGCATGCAACCATTTATTCCTTTGATGATGACAGCAAGGCTGTTATTGAAGAGGCACTTAAGGACTATCCTAATCAAGCAGCGCTCAAAATACAATCGATGATGATGAACTAA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| hypothetical protein | Os12g0516300 [Oryza sativa (japonica cultivar-group)]. | MNIATGAMNTLLPKLGELLVGEYKLQKGVKGEIEELEKELKGMTAALHKVAETPVDQLDQQVKIWASEVRELSYDIEDAIDTFMLKCKGHEPATSFKKVTNLFNKFKTNHQIHGVMKDIMDQVKKVSERRDRYIVDDNAARPTVVDVDSRLEAMYRKATELIGISKPKNELTKQLLEYDGSSSQQSNIISIVGFGGLGKTTLANSLFQELKAKFDSYCFVSVSLNPDINKILKNILLQLDEKMYSHIDETWETKQLIDKIRDFLNNRRFLCVIDDVWKKSAWDTIKLAVQDAKLGSKIIVTTRNKVVAEHAGSGVYEMKPLSDDDSRQLFCKRIFDSNDDCPADLCGVTEKILKKCGGVPLAIITTACLLASKPRNSEEWDKVNKSISLGLENNLDVDKMRKILSLSYNDLPFHLKTCLLSLSKYPEDELIRKDVLIWGWLAEGFITDETRPVGTSLQEIGESYFNELINRSLIQPMSEDNFWDEDGKVHVFWDEDGKVHACKVHDMVLELINQLSVEEDFVTTYLSDGQQTGKHTCTAQKKKIRRLSLHNSNKSYASPEAREQLSKVRSITIFGKVDSIPPLSSFHVLRVLQLEDCSGMDKNHLNHLDKLRLLRFLRLGHYSATELPESIGKLESLETLDIRGARKPSSFKSHKVLFPMSFAKLRKLLRLYAGRVKLAQGLMLGNMKSLQELVIEATRKVIKEIGNLTELRTLRIVFGSEKTFELKESIQTSIQRLTNLQDLDLRNNISFEEIIDMQQVPSGLQRLFMPDSFMKAFPCWINSLMLSHLTTLSICLDFEYLQSDHLDRLAELPSLRFLRLQLAFVSEQLQEKLTIHRGACAFRSLKDFQFYSSMMPSFQPGAMPHLERLYLSIWTRLRRGGLNDLGLENLYSLRHATIYSFDDDSKAVIEEALKDYPNQAALKIQSMMMN |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| Gene3D: G3DSA:3.40.50.300 | 36-122 | G3DSA:3.40.50.300 | LEKELKGMTAALHKVAETPVDQLDQQVKIWASEVRELSYDIEDAIDTFMLKCKGHEPATSFKKVTNLFNKFKTNHQIHGVMKDIMDQ |
| superfamily: SSF52540 | 144-395 | SSF52540 | VVDVDSRLEAMYRKATELIGISKPKNELTKQLLEYDGSSSQQSNIISIVGFGGLGKTTLANSLFQELKAKFDSYCFVSVSLNPDINKILKNILLQLDEKMYSHIDETWETKQLIDKIRDFLNNRRFLCVIDDVWKKSAWDTIKLAVQDAKLGSKIIVTTRNKVVAEHAGSGVYEMKPLSDDDSRQLFCKRIFDSNDDCPADLCGVTEKILKKCGGVPLAIITTACLLASKPRNSEEWDKVNKSISLGLENNL |
| Gene3D: G3DSA:3.40.50.300 | 163-305 | G3DSA:3.40.50.300 | GISKPKNELTKQLLEYDGSSSQQSNIISIVGFGGLGKTTLANSLFQELKAKFDSYCFVSVSLNPDINKILKNILLQLDEKMYSHIDETWETKQLIDKIRDFLNNRRFLCVIDDVWKKSAWDTIKLAVQDAKLGSKIIVTTRNK |
| HMMPfam: PF00931 IPR002182
|
167-449 | NB-ARC,NBS NB-ARC
|
PKNELTKQLLEYDGSSSQQSNIISIVGFGGLGKTTLANSLFQELKAKFDSYCFVSVSLNPDINKILKNILLQLDEKMYSHIDETWETKQLIDKIRDFLNNRRFLCVIDDVWKKSAWDTIKLAVQDAKLGSKIIVTTRNKVVAEHAGSGVYEMKPLSDDDSRQLFCKRIFDSNDDCPADLCGVTEKILKKCGGVPLAIITTACLLASKPRNSEEWDKVNKSISLGLENNLDVDKMRKILSLSYNDLPFHLKTCLLSLSKYPEDELIRKDVLIWGWLAEGFITDE |
| FPrintScan: PR00364 IPR000767
|
188-203 | DISEASERSIST Disease resistance protein
|
IISIVGFGGLGKTTLA |
| HMMPanther: PTHR11017 | 188-820 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | IISIVGFGGLGKTTLANSLFQELKAKFDSYCFVSVSLNPDINKILKNILLQLDEKMYSHIDETWETKQLIDKIRDFLNNRRFLCVIDDVWKKSAWDTIKLAVQDAKLGSKIIVTTRNKVVAEHAGSGVYEMKPLSDDDSRQLFCKRIFDSNDDCPADLCGVTEKILKKCGGVPLAIITTACLLASKPRNSEEWDKVNKSISLGLENNLDVDKMRKILSLSYNDLPFHLKTCLLSLSKYPEDELIRKDVLIWGWLAEGFITDETRPVGTSLQEIGESYFNELINRSLIQPMSEDNFWDEDGKVHVFWDEDGKVHACKVHDMVLELINQLSVEEDFVTTYLSDGQQTGKHTCTAQKKKIRRLSLHNSNKSYASPEAREQLSKVRSITIFGKVDSIPPLSSFHVLRVLQLEDCSGMDKNHLNHLDKLRLLRFLRLGHYSATELPESIGKLESLETLDIRGARKPSSFKSHKVLFPMSFAKLRKLLRLYAGRVKLAQGLMLGNMKSLQELVIEATRKVIKEIGNLTELRTLRIVFGSEKTFELKESIQTSIQRLTNLQDLDLRNNISFEEIIDMQQVPSGLQRLFMPDSFMKAFPCWINSLMLSHLTTLSICLDFEYLQSDHLDRLAELPSLRFLRL |
| FPrintScan: PR00364 IPR000767
|
263-277 | DISEASERSIST Disease resistance protein
|
FLNNRRFLCVIDDVW |
| FPrintScan: PR00364 IPR000767
|
356-370 | DISEASERSIST Disease resistance protein
|
CGGVPLAIITTACLL |
| Gene3D: G3DSA:3.80.10.10 | 542-765 | G3DSA:3.80.10.10 | KKIRRLSLHNSNKSYASPEAREQLSKVRSITIFGKVDSIPPLSSFHVLRVLQLEDCSGMDKNHLNHLDKLRLLRFLRLGHYSATELPESIGKLESLETLDIRGARKPSSFKSHKVLFPMSFAKLRKLLRLYAGRVKLAQGLMLGNMKSLQELVIEATRKVIKEIGNLTELRTLRIVFGSEKTFELKESIQTSIQRLTNLQDLDLRNNISFEEIIDMQQVPSGLQ |
| superfamily: SSF52047 | 542-874 | SSF52047,LRR | KKIRRLSLHNSNKSYASPEAREQLSKVRSITIFGKVDSIPPLSSFHVLRVLQLEDCSGMDKNHLNHLDKLRLLRFLRLGHYSATELPESIGKLESLETLDIRGARKPSSFKSHKVLFPMSFAKLRKLLRLYAGRVKLAQGLMLGNMKSLQELVIEATRKVIKEIGNLTELRTLRIVFGSEKTFELKESIQTSIQRLTNLQDLDLRNNISFEEIIDMQQVPSGLQRLFMPDSFMKAFPCWINSLMLSHLTTLSICLDFEYLQSDHLDRLAELPSLRFLRLQLAFVSEQLQEKLTIHRGACAFRSLKDFQFYSSMMPSFQPGAMPHLERLYLSIW |
| FPrintScan: PR00364 IPR000767
|
735-751 | DISEASERSIST Disease resistance protein
|
QRLTNLQDLDLRNNISF |
| Gene3D: G3DSA:3.80.10.10 | 801-874 | G3DSA:3.80.10.10 | LQSDHLDRLAELPSLRFLRLQLAFVSEQLQEKLTIHRGACAFRSLKDFQFYSSMMPSFQPGAMPHLERLYLSIW |
List of References
Hajime Ohyanagi, Tsuyoshi Tanaka, Hiroaki Sakai, Yasumasa Shigemoto, Kaori Yamaguchi, Takuya Habara, Yasuyuki Fujii, Baltazar A Antonio, Yoshiaki Nagamura, Tadashi Imanishi, Kazuho Ikeo, Takeshi Itoh, Takashi Gojobori, Takuji Sasaki
The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information.
Nucleic Acids Res.: 2006, 34(Database issue);D741-4
PubMed:16381971
WorldCat.org
DOI
(I p)
The map-based sequence of the rice genome.
Nature: 2005, 436(7052);793-800
PubMed:16100779
WorldCat.org
DOI
(I p)
List of Contributions
There has not been any contribution yet.
