PRGDB00049850 (Os12g0511400)

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Os12g0511400
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 115488763 (NM_001073401)
Gene Class NL
Domain Type LRR, NBS, Others
Gene Species Oryza sativa Japonica Group

Comment?

Oryza sativa (japonica cultivar-group) Os12g0511400 (Os12g0511400) mRNA, complete cds.

DNA Sequence

ATGGAAGAAGCACTGGACTGGTCTTTCTGCGAACCCTTGCTGACAGTTGCCATATCTTTGATGGACAGAGCTTTATTCTACTTTGGTGGTGTCAAGGAGAAGGAGAAGGGGAGCAAGAAAAGATTTGGTGGTGTCGACAAGGAGAAGATATTGGAACGACTCGGACATGTTCGAGCAATATTCGATGAGTTCCGTCATCTGGTTCTGACCAATCTGAAAATTCCGTTCAGCTACAATCTTAAAGAAATCTGGAGTTTCAGGATTGACATTGAGGGGTTCGAGCACTGGATCGAGGAGATCGAATACCGTGGGCTGGTGGGACAGGGTCGCCACCCGACCTTCAATATTCTCAAGGCAAAGATCACCAACAAGTTTGCGAAATCTCCTGATTCGTATGCCATACGGGAAGGGCTGGATCACCTGATGAGGTTAGCGGATATTGCAGCACGAATACGGTATTTACGATTTGAGATCTCTGTATCCTCCAGCAGAACAACCACTCCGGTGGCAGTTGGCCGAGGGAGGGAGAAGGAAGATATAGAGGTGGTTAGCCGAGGGAGAGAGAAGGAAGAGATACAGCTCTTTGGCCGAGAGAGGGAGAAGGAGCAGATAGTGCAGTGGTTGATCAAGCAACCAGCTGAAAACTCTGAGTCTGAGATCTTCAGCACTGATCATATCCGGCTTTTTGCAATTCTGGGTGTGGCTGGCATGGGGAAAACTGCACTTGCCAAGGTAGCTTGCCAAGAACCCATTGTGTCAACCATTTTCGACTTTGTTGTGTGGGTTCAAGTGCCTTATGATTTCACTACAGAGACAATAGCAAAAATCATAATGGAAACTGTTACCAGTGTGTCGCCTGAATACTATAGTTTAAAGTTTCTGCAGCACGCTCTTACGGGCAAAAGGCTTTTGCTTGTTCTGGATGATACCTGGGAAGACGAAAGTGTGAAGAAGTGGGAAGCACTGGTGGCTACTCTCAGTAACTGTAAGAGAGGGAGCAGTATCCTGCTGACAACTCGAATGCAATCAGTGGTTGATATGGCAGCAGAAGCTGTAGGGTCTCCAGCTGAATGTCTGGAACTGGATGAATTGGGCAAAAGTGACAATCTCTTGTTGTTCATGAGTCGGTTGCCTTCTCAAGTGCATTCTGAAGGTTATTATCATCTTCGGTTGATCGGTGAACAGATAGCCGAAAATACTGGAGGATGCCCACTTGTAACAGAAAAGGTCGCTTCATGGTTGGGATCATGTGTGGAGAACCATCATTGGAATGCCGTCCTACAGAAAGGCTGGCAGAAACTGGGACTTAATGCCATTTTTGCAAGTTCTAGGTTGAGCTATGAACGTCTACCTTCAGAACTGCAAATTTGCTTTAGATACTTTAGTATATTTCCAAAGGGATACAAATTTAACAAGGTGGAATTAGCAAACATGTGGATTAGTTCTGGATTGATACCTTTTGGCTTATCGAAACAAGATGATACTGGCTTACAGCATAAGAAGGCTGCCTACCTGTTTAGTGCAGAGGATGTTGGGGAACAATACTTTGCTGCATTAGTAAGGAAATCGTTCTTTTGCCGTTTGCTGGAAACAGACCCTTCTAATGGAAATATGAAAGAATATTATGTCCTGCATAATTTGATGCATGACTGTGCACAGTTTGTTGCACGAAATGAATGCGCAAGAGTAGATGACAATAATTTTCAAGATGTCAGGCGGACAACAGTACACTTGTCTATTGCACATTGTGGCTCTTTAAGAGCAATCCCCCCTATAACAAATTTACGTACTCTTATTATACAAAGTGAATTTTGTCTTGATCAAGAGGCTGAACTTATGCTTGGAGAAGTTCTTCGTAAATCGGCACGCTTGCGTCTGCTATACTTGGATGTGCCATCCCTCTCTAATGCACTTGATGAAATCCCCAGTCTAACACAGCTCCGTTACCTCTTCCTGTTTTCATGTGATAAGTCTCATATTCGAAGTATCCTTAAACTCTGTCATCTGCAAGTGTTCAAGCTCAAATATTTCACAGGTAAACAAGCAGACTTGGATGGCATACGGAACATGCGTTTCTTGCGTTGTCTTCATGTTCCTGACAGTATGTTATCAAAGATACTTAAAACTGGGATGCCAACAACACTTCAGGAGTTACAAGAATTCGAGGTAGCTAAAAATGATGGTCACATGTTGAGTGCATTGAGTACTTTAACAAACCTTAAGCGACTCAGCCTAAGAAACCTCCAAAATGTCAGGAACTGTAAAGACGCAATGGAGATCAAATTAAAGGACAAACCAGACATGATGTTTTTGTCACTATCATGGAACAAACACTCAAATGATCCAGAGGATATAGATCATCAAATCATCGATAACCTAGAACCAAACAAAGGAATTCAGCAGTTGCATGTGTATGGATACAATGGAGTCCAACTTCCGGTTTGGATCGAGACTTCATTTCTCATCCATTTGGTGTCACTTGAGCTTCAATACTGCATGGAATGGAGGACCCTGCCATCATTTAAGGAGCTTAGTTCACTGAAGTATCTAAAGCTGGAACACCTTTTCCAATTAGGCTCGGTGATTGAGGAGCAATCTGGGAGCATAGAATCAGATAATGCATTTCTGCCCCCATTGCTCAATACGCTGATCGTCCGGTGGTGCCCTAACCTGAAGAAACTCCCTGCTTTACCTTGTACCCTTGAGAAATTAATAATAAGGCATGTTGGGCTTGCAGTTCTCCCTAGATTACATCAGGCATATGCTAGCACATGTGAATCATTATCAGTAGATTCGCGTCTTTCTCTTTTGCACATTGAAAGTTGTGCACATTTGACTTCTTTGGATGGTCTCCTAGATCAACAGCAACATCTTCAGCACCTCAAGACATTACTCGTGAGACATTGTGCAAAACTATGCCATCTACCGGCAAATGGTTTCACAGAATTACATCACTTGAATTTCCTAGAAATAGTTGCATGCCCAATGCTGAGGAATGTTAAGACTGACAGCAATCTGTTCCCTACATCACTCAATAACTTGGATATCAATCCATGCTGTCATATTGAGGCTTCAGTTCTCATGTCACTGCCAAACCTCACCTATCTCAGAAGGTTATCATTGGTCAGTTGCAGTAGTGTAGAAAAACTTCCATCAGATGAAGTGTTTAGGACACTGAAAAATCTCAATGATATGTTGATAGCCAGATGTGAAAGCTTGTTATCACTCGGTGGGCTTGGAGCTGCTGCCTCCCTGAGAACTCTATCAATCCTGTACTGTGACAAAATCTATTCTTCATCATCTCCACAGGCTGGCTGCTCCTTTATGCTATGGAAGCTCAAAGTTGATCGTGAAGCCATGTTGCTGGTGGAGCCAATAAAGAGCCTCAGGTACACCTTGGAGCTGCATATTGGTGATGATTATGCAATGGATTCCTTGCCAGAGGAGTGGTTGCTTCAGAATGCTTCTTCACTCCGTTTGATCGAGATAGGAGTTGCTAAGAATCTGCAGACCCTACCTACTCAGATGGAAAAGTTGGTATCACTACAGAGTTTGCATATCGAAAAAGCCCCTCGAATTCAGTTTCTCCCCAAGCTGCCATTTTCACTTAATAAGCTCACAATCTGGGGCTGTGACCCAAGGTTTCTGAAGCTCTATGAAAGGAATGTTGGTTCAGACTGGGGAAAAATTGAAAACATTGATCATGTGGATATGAAAGCCTACTCTGAAGAAACAAGCGATGATGATGATGATAAGATTCAGCATTTCGATGACAGCATCAGCTATCCTTCCAGCCAATTTATTGTCATAGACTAA


Protein sequences

Name Description Sequence
hypothetical protein Os12g0511400 [Oryza sativa (japonica cultivar-group)].

MEEALDWSFCEPLLTVAISLMDRALFYFGGVKEKEKGSKKRFGGVDKEKILERLGHVRAIFDEFRHLVLTNLKIPFSYNLKEIWSFRIDIEGFEHWIEEIEYRGLVGQGRHPTFNILKAKITNKFAKSPDSYAIREGLDHLMRLADIAARIRYLRFEISVSSSRTTTPVAVGRGREKEDIEVVSRGREKEEIQLFGREREKEQIVQWLIKQPAENSESEIFSTDHIRLFAILGVAGMGKTALAKVACQEPIVSTIFDFVVWVQVPYDFTTETIAKIIMETVTSVSPEYYSLKFLQHALTGKRLLLVLDDTWEDESVKKWEALVATLSNCKRGSSILLTTRMQSVVDMAAEAVGSPAECLELDELGKSDNLLLFMSRLPSQVHSEGYYHLRLIGEQIAENTGGCPLVTEKVASWLGSCVENHHWNAVLQKGWQKLGLNAIFASSRLSYERLPSELQICFRYFSIFPKGYKFNKVELANMWISSGLIPFGLSKQDDTGLQHKKAAYLFSAEDVGEQYFAALVRKSFFCRLLETDPSNGNMKEYYVLHNLMHDCAQFVARNECARVDDNNFQDVRRTTVHLSIAHCGSLRAIPPITNLRTLIIQSEFCLDQEAELMLGEVLRKSARLRLLYLDVPSLSNALDEIPSLTQLRYLFLFSCDKSHIRSILKLCHLQVFKLKYFTGKQADLDGIRNMRFLRCLHVPDSMLSKILKTGMPTTLQELQEFEVAKNDGHMLSALSTLTNLKRLSLRNLQNVRNCKDAMEIKLKDKPDMMFLSLSWNKHSNDPEDIDHQIIDNLEPNKGIQQLHVYGYNGVQLPVWIETSFLIHLVSLELQYCMEWRTLPSFKELSSLKYLKLEHLFQLGSVIEEQSGSIESDNAFLPPLLNTLIVRWCPNLKKLPALPCTLEKLIIRHVGLAVLPRLHQAYASTCESLSVDSRLSLLHIESCAHLTSLDGLLDQQQHLQHLKTLLVRHCAKLCHLPANGFTELHHLNFLEIVACPMLRNVKTDSNLFPTSLNNLDINPCCHIEASVLMSLPNLTYLRRLSLVSCSSVEKLPSDEVFRTLKNLNDMLIARCESLLSLGGLGAAASLRTLSILYCDKIYSSSSPQAGCSFMLWKLKVDREAMLLVEPIKSLRYTLELHIGDDYAMDSLPEEWLLQNASSLRLIEIGVAKNLQTLPTQMEKLVSLQSLHIEKAPRIQFLPKLPFSLNKLTIWGCDPRFLKLYERNVGSDWGKIENIDHVDMKAYSEETSDDDDDKIQHFDDSISYPSSQFIVID

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017
54-1195 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

LGHVRAIFDEFRHLVLTNLKIPFSYNLKEIWSFRIDIEGFEHWIEEIEYRGLVGQGRHPTFNILKAKITNKFAKSPDSYAIREGLDHLMRLADIAARIRYLRFEISVSSSRTTTPVAVGRGREKEDIEVVSRGREKEEIQLFGREREKEQIVQWLIKQPAENSESEIFSTDHIRLFAILGVAGMGKTALAKVACQEPIVSTIFDFVVWVQVPYDFTTETIAKIIMETVTSVSPEYYSLKFLQHALTGKRLLLVLDDTWEDESVKKWEALVATLSNCKRGSSILLTTRMQSVVDMAAEAVGSPAECLELDELGKSDNLLLFMSRLPSQVHSEGYYHLRLIGEQIAENTGGCPLVTEKVASWLGSCVENHHWNAVLQKGWQKLGLNAIFASSRLSYERLPSELQICFRYFSIFPKGYKFNKVELANMWISSGLIPFGLSKQDDTGLQHKKAAYLFSAEDVGEQYFAALVRKSFFCRLLETDPSNGNMKEYYVLHNLMHDCAQFVARNECARVDDNNFQDVRRTTVHLSIAHCGSLRAIPPITNLRTLIIQSEFCLDQEAELMLGEVLRKSARLRLLYLDVPSLSNALDEIPSLTQLRYLFLFSCDKSHIRSILKLCHLQVFKLKYFTGKQADLDGIRNMRFLRCLHVPDSMLSKILKTGMPTTLQELQEFEVAKNDGHMLSALSTLTNLKRLSLRNLQNVRNCKDAMEIKLKDKPDMMFLSLSWNKHSNDPEDIDHQIIDNLEPNKGIQQLHVYGYNGVQLPVWIETSFLIHLVSLELQYCMEWRTLPSFKELSSLKYLKLEHLFQLGSVIEEQSGSIESDNAFLPPLLNTLIVRWCPNLKKLPALPCTLEKLIIRHVGLAVLPRLHQAYASTCESLSVDSRLSLLHIESCAHLTSLDGLLDQQQHLQHLKTLLVRHCAKLCHLPANGFTELHHLNFLEIVACPMLRNVKTDSNLFPTSLNNLDINPCCHIEASVLMSLPNLTYLRRLSLVSCSSVEKLPSDEVFRTLKNLNDMLIARCESLLSLGGLGAAASLRTLSILYCDKIYSSSSPQAGCSFMLWKLKVDREAMLLVEPIKSLRYTLELHIGDDYAMDSLPEEWLLQNASSLRLIEIGVAKNLQTLPTQMEKLVSLQSLHIEKAPRIQF

HMMPanther: PTHR11017:SF28
54-1195 PTHR11017:SF28

LGHVRAIFDEFRHLVLTNLKIPFSYNLKEIWSFRIDIEGFEHWIEEIEYRGLVGQGRHPTFNILKAKITNKFAKSPDSYAIREGLDHLMRLADIAARIRYLRFEISVSSSRTTTPVAVGRGREKEDIEVVSRGREKEEIQLFGREREKEQIVQWLIKQPAENSESEIFSTDHIRLFAILGVAGMGKTALAKVACQEPIVSTIFDFVVWVQVPYDFTTETIAKIIMETVTSVSPEYYSLKFLQHALTGKRLLLVLDDTWEDESVKKWEALVATLSNCKRGSSILLTTRMQSVVDMAAEAVGSPAECLELDELGKSDNLLLFMSRLPSQVHSEGYYHLRLIGEQIAENTGGCPLVTEKVASWLGSCVENHHWNAVLQKGWQKLGLNAIFASSRLSYERLPSELQICFRYFSIFPKGYKFNKVELANMWISSGLIPFGLSKQDDTGLQHKKAAYLFSAEDVGEQYFAALVRKSFFCRLLETDPSNGNMKEYYVLHNLMHDCAQFVARNECARVDDNNFQDVRRTTVHLSIAHCGSLRAIPPITNLRTLIIQSEFCLDQEAELMLGEVLRKSARLRLLYLDVPSLSNALDEIPSLTQLRYLFLFSCDKSHIRSILKLCHLQVFKLKYFTGKQADLDGIRNMRFLRCLHVPDSMLSKILKTGMPTTLQELQEFEVAKNDGHMLSALSTLTNLKRLSLRNLQNVRNCKDAMEIKLKDKPDMMFLSLSWNKHSNDPEDIDHQIIDNLEPNKGIQQLHVYGYNGVQLPVWIETSFLIHLVSLELQYCMEWRTLPSFKELSSLKYLKLEHLFQLGSVIEEQSGSIESDNAFLPPLLNTLIVRWCPNLKKLPALPCTLEKLIIRHVGLAVLPRLHQAYASTCESLSVDSRLSLLHIESCAHLTSLDGLLDQQQHLQHLKTLLVRHCAKLCHLPANGFTELHHLNFLEIVACPMLRNVKTDSNLFPTSLNNLDINPCCHIEASVLMSLPNLTYLRRLSLVSCSSVEKLPSDEVFRTLKNLNDMLIARCESLLSLGGLGAAASLRTLSILYCDKIYSSSSPQAGCSFMLWKLKVDREAMLLVEPIKSLRYTLELHIGDDYAMDSLPEEWLLQNASSLRLIEIGVAKNLQTLPTQMEKLVSLQSLHIEKAPRIQF

superfamily: SSF52540
194-429 SSF52540

LFGREREKEQIVQWLIKQPAENSESEIFSTDHIRLFAILGVAGMGKTALAKVACQEPIVSTIFDFVVWVQVPYDFTTETIAKIIMETVTSVSPEYYSLKFLQHALTGKRLLLVLDDTWEDESVKKWEALVATLSNCKRGSSILLTTRMQSVVDMAAEAVGSPAECLELDELGKSDNLLLFMSRLPSQVHSEGYYHLRLIGEQIAENTGGCPLVTEKVASWLGSCVENHHWNAVLQK

Gene3D: G3DSA:3.40.50.300
195-354 G3DSA:3.40.50.300

FGREREKEQIVQWLIKQPAENSESEIFSTDHIRLFAILGVAGMGKTALAKVACQEPIVSTIFDFVVWVQVPYDFTTETIAKIIMETVTSVSPEYYSLKFLQHALTGKRLLLVLDDTWEDESVKKWEALVATLSNCKRGSSILLTTRMQSVVDMAAEAVGS

HMMPfam: PF00931
IPR002182
224-485 NB-ARC,NBS
NB-ARC

DHIRLFAILGVAGMGKTALAKVACQEPIVSTIFDFVVWVQVPYDFTTETIAKIIMETVTSVSPEYYSLKFLQHALTGKRLLLVLDDTWEDESVKKWEALVATLSNCKRGSSILLTTRMQSVVDMAAEAVGSPAECLELDELGKSDNLLLFMSRLPSQVHSEGYYHLRLIGEQIAENTGGCPLVTEKVASWLGSCVENHHWNAVLQKGWQKLGLNAIFASSRLSYERLPSELQICFRYFSIFPKGYKFNKVELANMWISSGLI

FPrintScan: PR00364
IPR000767
228-243 DISEASERSIST
Disease resistance protein

LFAILGVAGMGKTALA

FPrintScan: PR00364
IPR000767
297-311 DISEASERSIST
Disease resistance protein

ALTGKRLLLVLDDTW

FPrintScan: PR00364
IPR000767
400-414 DISEASERSIST
Disease resistance protein

TGGCPLVTEKVASWL

superfamily: SSF52058
527-931 SSF52058,LRR

RLLETDPSNGNMKEYYVLHNLMHDCAQFVARNECARVDDNNFQDVRRTTVHLSIAHCGSLRAIPPITNLRTLIIQSEFCLDQEAELMLGEVLRKSARLRLLYLDVPSLSNALDEIPSLTQLRYLFLFSCDKSHIRSILKLCHLQVFKLKYFTGKQADLDGIRNMRFLRCLHVPDSMLSKILKTGMPTTLQELQEFEVAKNDGHMLSALSTLTNLKRLSLRNLQNVRNCKDAMEIKLKDKPDMMFLSLSWNKHSNDPEDIDHQIIDNLEPNKGIQQLHVYGYNGVQLPVWIETSFLIHLVSLELQYCMEWRTLPSFKELSSLKYLKLEHLFQLGSVIEEQSGSIESDNAFLPPLLNTLIVRWCPNLKKLPALPCTLEKLIIRHVGLAVLPRLHQAYASTCESLSVD

Gene3D: G3DSA:3.80.10.10
585-739 G3DSA:3.80.10.10

SLRAIPPITNLRTLIIQSEFCLDQEAELMLGEVLRKSARLRLLYLDVPSLSNALDEIPSLTQLRYLFLFSCDKSHIRSILKLCHLQVFKLKYFTGKQADLDGIRNMRFLRCLHVPDSMLSKILKTGMPTTLQELQEFEVAKNDGHMLSALSTLTN

Gene3D: G3DSA:3.80.10.10
740-866 G3DSA:3.80.10.10

LKRLSLRNLQNVRNCKDAMEIKLKDKPDMMFLSLSWNKHSNDPEDIDHQIIDNLEPNKGIQQLHVYGYNGVQLPVWIETSFLIHLVSLELQYCMEWRTLPSFKELSSLKYLKLEHLFQLGSVIEEQS

Gene3D: G3DSA:3.80.10.10
923-1200 G3DSA:3.80.10.10

STCESLSVDSRLSLLHIESCAHLTSLDGLLDQQQHLQHLKTLLVRHCAKLCHLPANGFTELHHLNFLEIVACPMLRNVKTDSNLFPTSLNNLDINPCCHIEASVLMSLPNLTYLRRLSLVSCSSVEKLPSDEVFRTLKNLNDMLIARCESLLSLGGLGAAASLRTLSILYCDKIYSSSSPQAGCSFMLWKLKVDREAMLLVEPIKSLRYTLELHIGDDYAMDSLPEEWLLQNASSLRLIEIGVAKNLQTLPTQMEKLVSLQSLHIEKAPRIQFLPKLP

superfamily: SSF52058
932-1232 SSF52058,LRR

SRLSLLHIESCAHLTSLDGLLDQQQHLQHLKTLLVRHCAKLCHLPANGFTELHHLNFLEIVACPMLRNVKTDSNLFPTSLNNLDINPCCHIEASVLMSLPNLTYLRRLSLVSCSSVEKLPSDEVFRTLKNLNDMLIARCESLLSLGGLGAAASLRTLSILYCDKIYSSSSPQAGCSFMLWKLKVDREAMLLVEPIKSLRYTLELHIGDDYAMDSLPEEWLLQNASSLRLIEIGVAKNLQTLPTQMEKLVSLQSLHIEKAPRIQFLPKLPFSLNKLTIWGCDPRFLKLYERNVGSDWGKIEN

FPrintScan: PR00364
IPR000767
956-972 DISEASERSIST
Disease resistance protein

QHLQHLKTLLVRHCAKL


List of References

Hajime Ohyanagi, Tsuyoshi Tanaka, Hiroaki Sakai, Yasumasa Shigemoto, Kaori Yamaguchi, Takuya Habara, Yasuyuki Fujii, Baltazar A Antonio, Yoshiaki Nagamura, Tadashi Imanishi, Kazuho Ikeo, Takeshi Itoh, Takashi Gojobori, Takuji Sasaki
The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information.
Nucleic Acids Res.: 2006, 34(Database issue);D741-4
PubMed:16381971 WorldCat.org DOI (I p)


The map-based sequence of the rice genome.
Nature: 2005, 436(7052);793-800
PubMed:16100779 WorldCat.org DOI (I p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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