PRGDB00049854 (Os12g0485900)
| Os12g0485900 | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 115488595 (NM_001073317) |
| Gene Class | CNL |
| Domain Type | NBS, LRR, LRR, Others |
| Gene Species | Oryza sativa Japonica Group |
DNA Sequence
ATGGTTGCAACAACAGCTATTGTGGGTGCTACCACGGGGGTGATGAAGCCCCTCCTGTCCAAGCTCACCAAGCTGCTGGGCGAAGAGTATGCCAAGCTCAAAGGCGTGCGCAAGCAGATCAAGTTCTTGATAGATGAGTTGAGCACCATGAGTGCTGCACTCGAGATGCTCGCGGATTCGGACCAGCAGCTCAACCCAGAAATGAGGGATTGGAGGGACAAGCTACGCGAGCTGGCCTATGACCTGGAAGATTGCATCGATGATTTTATGTCTCGTGTTGACCATGATGGGGAAAAGATGGGCTTCAGGAAATTCTTCCGTAAGTTGAAGAAACTGAAGGCGCGCCATGAGATTGCCAATGAGATCGAAGAGCTCAAGATCCGTGCGATCGAGGCAAGCGAAAGGCACAAGAGGTATAATTTTGACCAATTAGCACACAACTCTAGCACTTTTGGCATTGATCCTAGGCTGTCGGCGTTCTATGAGGAGGTTGATAAACTTGTGGGCATTGATGGTCCTAAGAAGCGTATCATTGAGCTGCTAGCTATGGAGATGAAAGGGTCTCTAAAAGTGGTCTCTATTGTTGGTTGTGGAGGTCTTGGTAAGACTACTCTTACAAACCAAGTTTATGACACAATTCGAAGCCAATTTTCTTGTGCAGCTTTTGTGTCAGTTTCACAAAGGCCTGATATAAAGAAGATTCTAAACGATATTGCTGAAGGAGTAGGGATCTCTTCTCGTACTCCGGTTGGTAATGATGAAAAGAAACTCATTAATATACTCCGAGAGCATCTCAAGAATAAAAGATACTTTGTTGTGATTGATGATTTATGGGATGCGAAAGCATGGAAAATTATCGAGCTTGCATTATTAAACAATAATTGTGGCAGCAGAATAATCACTACAACACGAAGCGTTACAGTTGCATCATGTTGTTCTTCTCAAGTTGGTTATATTTATGAGATGAAGCCTCTTAGTTTCAATGAATCCAAATGGTTATTTTTGAAAAGAACATTTGATTATGAAAATTCACATTATCCTCATCCAGAAAATATTTTGGATAAGATATTACGAAAATATGGTGGCCTACCATTGGCAATCATTACTATATCTAGCTTGTTATTAGATCAGCATGAAATTGATGAATGGCATAGGGTACTTAATACTATTGGTTGTGGACTTGCAAATGATCCTAATGCAGAGACAATGTCAAATATATTATCACTGAGTTTCTTCAATCTCCCTCACTATCTAAAAACTTGCTTCATGTACCTGAGTGTATTTCCAGAAGATCGTAAGATTAAGAAACGGCATTTGGTTAGCAAATGGATTGCTGAAGGATTCATTCATAGACACATAAAGGCCATAGGCGCTCGATCGTATGCTGCCTCGATCCGGCCTCGATCGATCGGCGCCTCAGCAGCAGCAGCAGCAGTAGCAGCAGTTGGTCGGCCTCGGCCAGATGGTTATATTTATGAGATGAAGCCTCTTAGTTTCGATGACTCCAAATGGTTATTTTTGAAAAGAGCATTTGGTTATGAAAAATCACATTATCCTCATCTGGAAGATGTTCTGGATAAGATACTAGGAAAATGTGGTGGCCTACCATTGGCAATCATTACTATATCTAGCTTGTTATCATATCAGCATGCTATTGATGAATGGCATAGGGTACTTAATGATATTGGTTATGGACTTGCAAGGGATCCTTATGCAGAGACAATGTCAAATATATTATCGCTGAGTTTCTTCAATCTCCCTCACCATCTAAAAACTTGCTTCATGTACCTAAGTGTATTTCCAGAAGATTATAATATTGACAAACGACGTTTGGTTAGTAAATGGATTGCTGAAGGATTCATTCAGGATGAACAAGGGCGAAGTGCATATAGAACTGGTGAGTTGTATTTTAATGAGCTCATCAATAGAAGCCTGATTGAACCTGTTGATGTAAAGTATGGTCAGGCAAAGGCATGTCGAGTTCATGACATCATTCTTGACTACATCAAATGCAAGGCTACTGAAGAGAACTTTGTCACCTCATTAGGATCTACAGTGCCTGGATGCACTACAGAGTATAAGGTTCGGAGGCTGTCAGTCATCAACAGCAATGAAGAAGATGTCAACATACCGACAAGCCTAGATCTGTCTCAAGTACGATCACTTACTATATTTGGAAATCGCATGCAAACTTCTGTATTTGATTTCAAGTTTCTTCGTGTGTTGGACCTAGTATATAGGGACAGAATGGGTGACCTTTTTGCAAATATTGAAAAATTGTTTCATCTGAAGTACATGTGTATCTCCTCATATGGAGTGGATTATCTCCCAGAAAAAATTGGAGAACTGAAATATTTAGAAACGCTGGACATAAGACAAACCAATGTGGAGATATTGCCATCAACTATCACAAACCTTCAACGACTAGCTCGTCTATTTATCAATCAGGACACGAGATTTTCAGATGAAACGACTATTGGACAATTGAAGAGCCTGGAAGAGCTAAAAGAATTTGTAGTGTCTCAGTCTGAACAAGTGACGGCCCTCCAGGAAGTCAGTAAGCTAACCAAGCTAAGGACATTAAAATTAACACTGCAGTCACCATTGTCACTTGATGATTACCATAGTTGTGTGGGAACATTATTGCAATCTTTATGCAACCTTTATGATTTGTGCATCATGGACCAATCTTATGAAAATTATTGTCTTACGTTGGATTCATGGCACATTGCTTCTCCTTGTAGCCTTCGTAAGCTTGTAATCAAACTAGTACTCACCAAGGTGCCAAATTGGATGGGTGTGCTTGGAAATATTGGAGTACTAGTTCTAGGTATCCTGTGTATAGCACCAGATGATATTGAGATACTTGGAGCAATACCCAGCTTGCTTTTTCTCGAGCTACAAACTTACGGAGGCACCAATGGAAGGATCATCATCCATGGAAACAACAGATTCATAAGTTTGAAATATTTCTCCTTGGTTATTCATGCTTGTGGGACTGCATTGGAGTTTGAAGCAGGATCAATGCCAAAGGTTGAGCACCTCAAGCTTCAGTTTCATCTGCATGAATTGGAATGCCTGAATGGTTCTTCTGACTCAGGCATCCAACACCTCTCTGCTCTCGGCAAGGTTGAGGTCAAAATTATATGCAAACCCTCTTATGTCATTGAATTGAATGGTTTGAACTATGATCTGATGGAACAAAAGAGTGATTGCATCGTCAGATGTGTAGCAAGAACCATTAAAACTGCTGTTGAGACACTCCCCAACCATCCCACTATCAGTTTCAAAACATATCATGTCGAGGAATGTGAACATTTTGAAACAAAAATTGAAGAGAAGCAGACAGCGCAAGCACAGCGGGACCGTCATCTAGGAATCTTATGTATGGCACCAGAAGATATTGAGATCCTTGGAGCAATACCCAGCTTGGTTTTTCTCAAACTAGAAACTCTCGGAGGCACCAATGGAAGGATCATCATCCATGGAAACAACAGATTCATAAGTTTGAAATATTTCTCCTTGGCTATCGGTGCCTGTGGGACTGCACTGGAGTTTGAAGAAGGATCAATGCCAAAGGTTGAGCACCTCAAGCTTGATTTTCGTCTGCACGAATTGGAATGCCTGAATGGTGCTTCTGACTTAGGCATCCAACACCTCTCTGCTCTATGCAAGGTTGAGGTCGAAATTAATTGCAATTGCTTCAAGCACACGTCCAATTTCTTCGATGACTTTGAATTGAAATGTTTGAACTATGATCTGATGGAAGAAACGAGTGATTGCATCGTCAGATGTGTTGCAATAACCATTAAATCTGCCGTTGATACACTCCCCAACCATCCAACTATCAGTTTCCAAATAAACATTTCGAATTGGATGGAAGCCTTTGTGAGATGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| hypothetical protein | Os12g0485900 [Oryza sativa (japonica cultivar-group)]. | MVATTAIVGATTGVMKPLLSKLTKLLGEEYAKLKGVRKQIKFLIDELSTMSAALEMLADSDQQLNPEMRDWRDKLRELAYDLEDCIDDFMSRVDHDGEKMGFRKFFRKLKKLKARHEIANEIEELKIRAIEASERHKRYNFDQLAHNSSTFGIDPRLSAFYEEVDKLVGIDGPKKRIIELLAMEMKGSLKVVSIVGCGGLGKTTLTNQVYDTIRSQFSCAAFVSVSQRPDIKKILNDIAEGVGISSRTPVGNDEKKLINILREHLKNKRYFVVIDDLWDAKAWKIIELALLNNNCGSRIITTTRSVTVASCCSSQVGYIYEMKPLSFNESKWLFLKRTFDYENSHYPHPENILDKILRKYGGLPLAIITISSLLLDQHEIDEWHRVLNTIGCGLANDPNAETMSNILSLSFFNLPHYLKTCFMYLSVFPEDRKIKKRHLVSKWIAEGFIHRHIKAIGARSYAASIRPRSIGASAAAAAVAAVGRPRPDGYIYEMKPLSFDDSKWLFLKRAFGYEKSHYPHLEDVLDKILGKCGGLPLAIITISSLLSYQHAIDEWHRVLNDIGYGLARDPYAETMSNILSLSFFNLPHHLKTCFMYLSVFPEDYNIDKRRLVSKWIAEGFIQDEQGRSAYRTGELYFNELINRSLIEPVDVKYGQAKACRVHDIILDYIKCKATEENFVTSLGSTVPGCTTEYKVRRLSVINSNEEDVNIPTSLDLSQVRSLTIFGNRMQTSVFDFKFLRVLDLVYRDRMGDLFANIEKLFHLKYMCISSYGVDYLPEKIGELKYLETLDIRQTNVEILPSTITNLQRLARLFINQDTRFSDETTIGQLKSLEELKEFVVSQSEQVTALQEVSKLTKLRTLKLTLQSPLSLDDYHSCVGTLLQSLCNLYDLCIMDQSYENYCLTLDSWHIASPCSLRKLVIKLVLTKVPNWMGVLGNIGVLVLGILCIAPDDIEILGAIPSLLFLELQTYGGTNGRIIIHGNNRFISLKYFSLVIHACGTALEFEAGSMPKVEHLKLQFHLHELECLNGSSDSGIQHLSALGKVEVKIICKPSYVIELNGLNYDLMEQKSDCIVRCVARTIKTAVETLPNHPTISFKTYHVEECEHFETKIEEKQTAQAQRDRHLGILCMAPEDIEILGAIPSLVFLKLETLGGTNGRIIIHGNNRFISLKYFSLAIGACGTALEFEEGSMPKVEHLKLDFRLHELECLNGASDLGIQHLSALCKVEVEINCNCFKHTSNFFDDFELKCLNYDLMEETSDCIVRCVAITIKSAVDTLPNHPTISFQINISNWMEAFVR |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| Seg: seg | 2-14 | seg | VATTAIVGATTGV |
| HMMPanther: PTHR23155:SF226 | 11-1275 | OS12G0485900 PROTEIN,OS12G0485900 PROTEIN | TTGVMKPLLSKLTKLLGEEYAKLKGVRKQIKFLIDELSTMSAALEMLADSDQQLNPEMRDWRDKLRELAYDLEDCIDDFMSRVDHDGEKMGFRKFFRKLKKLKARHEIANEIEELKIRAIEASERHKRYNFDQLAHNSSTFGIDPRLSAFYEEVDKLVGIDGPKKRIIELLAMEMKGSLKVVSIVGCGGLGKTTLTNQVYDTIRSQFSCAAFVSVSQRPDIKKILNDIAEGVGISSRTPVGNDEKKLINILREHLKNKRYFVVIDDLWDAKAWKIIELALLNNNCGSRIITTTRSVTVASCCSSQVGYIYEMKPLSFNESKWLFLKRTFDYENSHYPHPENILDKILRKYGGLPLAIITISSLLLDQHEIDEWHRVLNTIGCGLANDPNAETMSNILSLSFFNLPHYLKTCFMYLSVFPEDRKIKKRHLVSKWIAEGFIHRHIKAIGARSYAASIRPRSIGASAAAAAVAAVGRPRPDGYIYEMKPLSFDDSKWLFLKRAFGYEKSHYPHLEDVLDKILGKCGGLPLAIITISSLLSYQHAIDEWHRVLNDIGYGLARDPYAETMSNILSLSFFNLPHHLKTCFMYLSVFPEDYNIDKRRLVSKWIAEGFIQDEQGRSAYRTGELYFNELINRSLIEPVDVKYGQAKACRVHDIILDYIKCKATEENFVTSLGSTVPGCTTEYKVRRLSVINSNEEDVNIPTSLDLSQVRSLTIFGNRMQTSVFDFKFLRVLDLVYRDRMGDLFANIEKLFHLKYMCISSYGVDYLPEKIGELKYLETLDIRQTNVEILPSTITNLQRLARLFINQDTRFSDETTIGQLKSLEELKEFVVSQSEQVTALQEVSKLTKLRTLKLTLQSPLSLDDYHSCVGTLLQSLCNLYDLCIMDQSYENYCLTLDSWHIASPCSLRKLVIKLVLTKVPNWMGVLGNIGVLVLGILCIAPDDIEILGAIPSLLFLELQTYGGTNGRIIIHGNNRFISLKYFSLVIHACGTALEFEAGSMPKVEHLKLQFHLHELECLNGSSDSGIQHLSALGKVEVKIICKPSYVIELNGLNYDLMEQKSDCIVRCVARTIKTAVETLPNHPTISFKTYHVEECEHFETKIEEKQTAQAQRDRHLGILCMAPEDIEILGAIPSLVFLKLETLGGTNGRIIIHGNNRFISLKYFSLAIGACGTALEFEEGSMPKVEHLKLDFRLHELECLNGASDLGIQHLSALCKVEVEINCNCFKHTSNFFDDFELKCLNYDLMEETSDCIVRCVAITIKSAVD |
| HMMPanther: PTHR23155 | 11-1275 | FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | TTGVMKPLLSKLTKLLGEEYAKLKGVRKQIKFLIDELSTMSAALEMLADSDQQLNPEMRDWRDKLRELAYDLEDCIDDFMSRVDHDGEKMGFRKFFRKLKKLKARHEIANEIEELKIRAIEASERHKRYNFDQLAHNSSTFGIDPRLSAFYEEVDKLVGIDGPKKRIIELLAMEMKGSLKVVSIVGCGGLGKTTLTNQVYDTIRSQFSCAAFVSVSQRPDIKKILNDIAEGVGISSRTPVGNDEKKLINILREHLKNKRYFVVIDDLWDAKAWKIIELALLNNNCGSRIITTTRSVTVASCCSSQVGYIYEMKPLSFNESKWLFLKRTFDYENSHYPHPENILDKILRKYGGLPLAIITISSLLLDQHEIDEWHRVLNTIGCGLANDPNAETMSNILSLSFFNLPHYLKTCFMYLSVFPEDRKIKKRHLVSKWIAEGFIHRHIKAIGARSYAASIRPRSIGASAAAAAVAAVGRPRPDGYIYEMKPLSFDDSKWLFLKRAFGYEKSHYPHLEDVLDKILGKCGGLPLAIITISSLLSYQHAIDEWHRVLNDIGYGLARDPYAETMSNILSLSFFNLPHHLKTCFMYLSVFPEDYNIDKRRLVSKWIAEGFIQDEQGRSAYRTGELYFNELINRSLIEPVDVKYGQAKACRVHDIILDYIKCKATEENFVTSLGSTVPGCTTEYKVRRLSVINSNEEDVNIPTSLDLSQVRSLTIFGNRMQTSVFDFKFLRVLDLVYRDRMGDLFANIEKLFHLKYMCISSYGVDYLPEKIGELKYLETLDIRQTNVEILPSTITNLQRLARLFINQDTRFSDETTIGQLKSLEELKEFVVSQSEQVTALQEVSKLTKLRTLKLTLQSPLSLDDYHSCVGTLLQSLCNLYDLCIMDQSYENYCLTLDSWHIASPCSLRKLVIKLVLTKVPNWMGVLGNIGVLVLGILCIAPDDIEILGAIPSLLFLELQTYGGTNGRIIIHGNNRFISLKYFSLVIHACGTALEFEAGSMPKVEHLKLQFHLHELECLNGSSDSGIQHLSALGKVEVKIICKPSYVIELNGLNYDLMEQKSDCIVRCVARTIKTAVETLPNHPTISFKTYHVEECEHFETKIEEKQTAQAQRDRHLGILCMAPEDIEILGAIPSLVFLKLETLGGTNGRIIIHGNNRFISLKYFSLAIGACGTALEFEEGSMPKVEHLKLDFRLHELECLNGASDLGIQHLSALCKVEVEINCNCFKHTSNFFDDFELKCLNYDLMEETSDCIVRCVAITIKSAVD |
| Seg: seg | 102-113 | seg | FRKFFRKLKKLK |
| Coil: coil | 115-136 | coiled-coil | RHEIANEIEELKIRAIEASERH |
| superfamily: SSF52540 | 150-397 | P-loop containing nucleoside triphosphate hydrolases | TFGIDPRLSAFYEEVDKLVGIDGPKKRIIELLAMEMKGSLKVVSIVGCGGLGKTTLTNQVYDTIRSQFSCAAFVSVSQRPDIKKILNDIAEGVGISSRTPVGNDEKKLINILREHLKNKRYFVVIDDLWDAKAWKIIELALLNNNCGSRIITTTRSVTVASCCSSQVGYIYEMKPLSFNESKWLFLKRTFDYENSHYPHPENILDKILRKYGGLPLAIITISSLLLDQHEIDEWHRVLNTIGCGLAND |
| Gene3D: G3DSA:3.40.50.300 | 170-305 | no description | IDGPKKRIIELLAMEMKGSLKVVSIVGCGGLGKTTLTNQVYDTIRSQFSCAAFVSVSQRPDIKKILNDIAEGVGISSRTPVGNDEKKLINILREHLKNKRYFVVIDDLWDAKAWKIIELALLNNNCGSRIITTTRS |
| HMMPfam: PF00931 IPR002182
|
174-450 | NB-ARC,NBS NB-ARC
|
KKRIIELLAMEMKGSLKVVSIVGCGGLGKTTLTNQVYDTIRSQFSCAAFVSVSQRPDIKKILNDIAEGVGISSRTPVGNDEKKLINILREHLKNKRYFVVIDDLWDAKAWKIIELALLNNNCGSRIITTTRSVTVASCCSSQVGYIYEMKPLSFNESKWLFLKRTFDYENSHYPHPENILDKILRKYGGLPLAIITISSLLLDQHEIDEWHRVLNTIGCGLANDPNAETMSNILSLSFFNLPHYLKTCFMYLSVFPEDRKIKKRHLVSKWIAEGFIH |
| FPrintScan: PR00364 IPR000767
|
191-206 | DISEASERSIST Disease resistance protein
|
VVSIVGCGGLGKTTLT |
| FPrintScan: PR00364 IPR000767
|
264-278 | DISEASERSIST Disease resistance protein
|
HLKNKRYFVVIDDLW |
| Seg: seg | 462-487 | seg | AASIRPRSIGASAAAAAVAAVGRPRP |
| superfamily: SSF52540 | 489-569 | P-loop containing nucleoside triphosphate hydrolases | GYIYEMKPLSFDDSKWLFLKRAFGYEKSHYPHLEDVLDKILGKCGGLPLAIITISSLLSYQHAIDEWHRVLNDIGYGLARD |
| HMMPfam: PF00931 IPR002182
|
490-625 | NB-ARC,NBS NB-ARC
|
YIYEMKPLSFDDSKWLFLKRAFGYEKSHYPHLEDVLDKILGKCGGLPLAIITISSLLSYQHAIDEWHRVLNDIGYGLARDPYAETMSNILSLSFFNLPHHLKTCFMYLSVFPEDYNIDKRRLVSKWIAEGFIQDEQ |
| FPrintScan: PR00364 IPR000767
|
532-546 | DISEASERSIST Disease resistance protein
|
CGGLPLAIITISSLL |
| superfamily: SSF52058 | 660-1063 | L domain-like,LRR | RVHDIILDYIKCKATEENFVTSLGSTVPGCTTEYKVRRLSVINSNEEDVNIPTSLDLSQVRSLTIFGNRMQTSVFDFKFLRVLDLVYRDRMGDLFANIEKLFHLKYMCISSYGVDYLPEKIGELKYLETLDIRQTNVEILPSTITNLQRLARLFINQDTRFSDETTIGQLKSLEELKEFVVSQSEQVTALQEVSKLTKLRTLKLTLQSPLSLDDYHSCVGTLLQSLCNLYDLCIMDQSYENYCLTLDSWHIASPCSLRKLVIKLVLTKVPNWMGVLGNIGVLVLGILCIAPDDIEILGAIPSLLFLELQTYGGTNGRIIIHGNNRFISLKYFSLVIHACGTALEFEAGSMPKVEHLKLQFHLHELECLNGSSDSGIQHLSALGKVEVKIICKPSYVIELNGLNY |
| Gene3D: G3DSA:3.80.10.10 | 708-921 | no description | VNIPTSLDLSQVRSLTIFGNRMQTSVFDFKFLRVLDLVYRDRMGDLFANIEKLFHLKYMCISSYGVDYLPEKIGELKYLETLDIRQTNVEILPSTITNLQRLARLFINQDTRFSDETTIGQLKSLEELKEFVVSQSEQVTALQEVSKLTKLRTLKLTLQSPLSLDDYHSCVGTLLQSLCNLYDLCIMDQSYENYCLTLDSWHIASPCSLRKLVI |
| FPrintScan: PR00364 IPR000767
|
853-869 | DISEASERSIST Disease resistance protein
|
SKLTKLRTLKLTLQSPL |
| Seg: seg | 854-865 | seg | KLTKLRTLKLTL |
| Seg: seg | 933-948 | seg | GVLGNIGVLVLGILCI |
List of References
Hajime Ohyanagi, Tsuyoshi Tanaka, Hiroaki Sakai, Yasumasa Shigemoto, Kaori Yamaguchi, Takuya Habara, Yasuyuki Fujii, Baltazar A Antonio, Yoshiaki Nagamura, Tadashi Imanishi, Kazuho Ikeo, Takeshi Itoh, Takashi Gojobori, Takuji Sasaki
The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information.
Nucleic Acids Res.: 2006, 34(Database issue);D741-4
PubMed:16381971
WorldCat.org
DOI
(I p)
The map-based sequence of the rice genome.
Nature: 2005, 436(7052);793-800
PubMed:16100779
WorldCat.org
DOI
(I p)
List of Contributions
There has not been any contribution yet.
