PRGDB00050092 (Pto resistance protein candidate Tg-12)

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Pto resistance protein candidate Tg-12
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 150408775 (EF492522)
Gene Class Unknown
Domain Type Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase
Gene Species Musa acuminata

Comment?

Musa acuminata Pto resistance protein candidate Tg-12 gene, partial cds.

DNA Sequence

AGGGTATACAGGGGTGTCCTCGCCGACGGTACCAAGATCGCGGTGAAACGAGCCATGCCGGGGTCGAAGCAAGGGTACCCGGAGTTCCAGACTGAGATCCTCGTCCTGTCCGGTATTCGCCACCGGCATCTCGTCTCCTTGATCGGGTACTGCGACGAGCAATCGGAGAGGCTCTTGGTCTACGAGTACATGGAGAAGGGGACGCTGAGGAACTACTTGTACGGCTCGGACAAGCCGTGTCTTTCATGGAAGCAGAGGCTGGAGATCTGCATCGGGGCCGCCAGGGGCCTTCACTACCTCCACACCGGCTACTCGCACACCATCATCCACCGCGACATCAAGTCCACCAACATCCTGCTTGACGAAAACTACTTGGCCAAGGTCTCCGACTTCGGCCTCTCCAAGCTGGGTCCTTCCTTCGGCGAGACCCATGTCACAACCGGAGTCAAGGGCACCTTTGGATACTTCGACCCGGAATACTTCAAGACGCAGAAGCTCACCGACAAGTCC


Protein sequences

Name Description Sequence
Pto resistance protein candidate Tg-12 Pto resistance protein candidate Tg-12 [Musa acuminata].

RVYRGVLADGTKIAVKRAMPGSKQGYPEFQTEILVLSGIRHRHLVSLIGYCDEQSERLLVYEYMEKGTLRNYLYGSDKPCLSWKQRLEICIGAARGLHYLHTGYSHTIIHRDIKSTNILLDENYLAKVSDFGLSKLGPSFGETHVTTGVKGTFGYFDPEYFKTQKLTDKS

Domains

Domain Start-End Description Sequence

Gene3D: G3DSA:3.30.200.20
1-50 G3DSA:3.30.200.20

RVYRGVLADGTKIAVKRAMPGSKQGYPEFQTEILVLSGIRHRHLVSLIGY

ProfileScan: PS50011
IPR000719
1-170 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

RVYRGVLADGTKIAVKRAMPGSKQGYPEFQTEILVLSGIRHRHLVSLIGYCDEQSERLLVYEYMEKGTLRNYLYGSDKPCLSWKQRLEICIGAARGLHYLHTGYSHTIIHRDIKSTNILLDENYLAKVSDFGLSKLGPSFGETHVTTGVKGTFGYFDPEYFKTQKLTDKS

superfamily: SSF56112
IPR011009
1-170 Kinase_like
Protein kinase-like domain

RVYRGVLADGTKIAVKRAMPGSKQGYPEFQTEILVLSGIRHRHLVSLIGYCDEQSERLLVYEYMEKGTLRNYLYGSDKPCLSWKQRLEICIGAARGLHYLHTGYSHTIIHRDIKSTNILLDENYLAKVSDFGLSKLGPSFGETHVTTGVKGTFGYFDPEYFKTQKLTDKS

HMMPanther: PTHR24420
1-170 PTHR24420,FAMILY NOT NAMED

RVYRGVLADGTKIAVKRAMPGSKQGYPEFQTEILVLSGIRHRHLVSLIGYCDEQSERLLVYEYMEKGTLRNYLYGSDKPCLSWKQRLEICIGAARGLHYLHTGYSHTIIHRDIKSTNILLDENYLAKVSDFGLSKLGPSFGETHVTTGVKGTFGYFDPEYFKTQKLTDKS

HMMPanther: PTHR24420:SF785
1-170 PTHR24420:SF785

RVYRGVLADGTKIAVKRAMPGSKQGYPEFQTEILVLSGIRHRHLVSLIGYCDEQSERLLVYEYMEKGTLRNYLYGSDKPCLSWKQRLEICIGAARGLHYLHTGYSHTIIHRDIKSTNILLDENYLAKVSDFGLSKLGPSFGETHVTTGVKGTFGYFDPEYFKTQKLTDKS

HMMPfam: PF07714
IPR001245
2-170 Pkinase_Tyr
Serine-threonine/tyrosine-protein kinase catalytic

VYRGVLADGTKIAVKRAMPGSKQGYPEFQTEILVLSGIRHRHLVSLIGYCDEQSERLLVYEYMEKGTLRNYLYGSDKPCLSWKQRLEICIGAARGLHYLHTGYSHTIIHRDIKSTNILLDENYLAKVSDFGLSKLGPSFGETHVTTGVKGTFGYFDPEYFKTQKLTDKS

Gene3D: G3DSA:1.10.510.10
51-169 G3DSA:1.10.510.10

CDEQSERLLVYEYMEKGTLRNYLYGSDKPCLSWKQRLEICIGAARGLHYLHTGYSHTIIHRDIKSTNILLDENYLAKVSDFGLSKLGPSFGETHVTTGVKGTFGYFDPEYFKTQKLTDK

PatternScan: PS00108
IPR008271
108-120 PROTEIN_KINASE_ST
Serine/threonine-protein kinase, active site

IIHRDIKSTNILL


List of References

Santy Peraza-Echeverria, Andrew James-Kay, Blondy Canto-Canché, Eduardo Castillo-Castro
Structural and phylogenetic analysis of Pto-type disease resistance gene candidates in banana.
Mol. Genet. Genomics: 2007, 278(4);443-53
PubMed:17587056 WorldCat.org DOI (P p)





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Analyses

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