PRGDB00050096 (Pto resistance protein candidate Tg-4)

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Pto resistance protein candidate Tg-4
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 150408767 (EF492518)
Gene Class Unknown
Domain Type Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase
Gene Species Musa acuminata

Comment?

Musa acuminata Pto resistance protein candidate Tg-4 gene, partial cds.

DNA Sequence

AACGTGTACATTGGCGAGCTCGACGACGGGACGAAGGTGGCGGTCAAGCGAGGGAATCCGCAGTCGGAGCAGGGGATCAACGAGTTCCAGACCGAGATCCAGATTCTGTCCAAGCTTCGTCACCGCCACCTGGTGTCGCTGATCGGATACTGCGACGAGAACTCGGAGATGATTTTGGTGTACGAGTACATGGCCAATGGGCCTTTCAGAGACCACATCTACGGGAGCGACCTACCGCCGCTGTCGTGGAAGCAGCGGCTGGAGATCTGCATCGGGGCCGCGCGCGGGCTACACTACCTCCACACTGGCACCGCGCAGGGCATCATCCACCGCGACGTCAAGACCACCAACATCCTCCTGGACGAAAACTTCATCGCCAAGGTGTCCGACTTCGGCCTCTCCAAGGACGCGCCGGGGATGAACCAGACGCACGTCAGCACGGCGGTGAAGGGCAGCTTCGGCTACCTCGACCCCGAGTACTTCAGGTGCCAGCAGCTCACGGACAAGTCG


Protein sequences

Name Description Sequence
Pto resistance protein candidate Tg-4 Pto resistance protein candidate Tg-4 [Musa acuminata].

NVYIGELDDGTKVAVKRGNPQSEQGINEFQTEIQILSKLRHRHLVSLIGYCDENSEMILVYEYMANGPFRDHIYGSDLPPLSWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKTTNILLDENFIAKVSDFGLSKDAPGMNQTHVSTAVKGSFGYLDPEYFRCQQLTDKS

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR24420:SF550
1-170 PTHR24420:SF550

NVYIGELDDGTKVAVKRGNPQSEQGINEFQTEIQILSKLRHRHLVSLIGYCDENSEMILVYEYMANGPFRDHIYGSDLPPLSWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKTTNILLDENFIAKVSDFGLSKDAPGMNQTHVSTAVKGSFGYLDPEYFRCQQLTDKS

Gene3D: G3DSA:3.30.200.20
1-49 G3DSA:3.30.200.20

NVYIGELDDGTKVAVKRGNPQSEQGINEFQTEIQILSKLRHRHLVSLIG

HMMPanther: PTHR24420
1-170 PTHR24420,FAMILY NOT NAMED

NVYIGELDDGTKVAVKRGNPQSEQGINEFQTEIQILSKLRHRHLVSLIGYCDENSEMILVYEYMANGPFRDHIYGSDLPPLSWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKTTNILLDENFIAKVSDFGLSKDAPGMNQTHVSTAVKGSFGYLDPEYFRCQQLTDKS

ProfileScan: PS50011
IPR000719
1-170 PROTEIN_KINASE_DOM
Protein kinase, catalytic domain

NVYIGELDDGTKVAVKRGNPQSEQGINEFQTEIQILSKLRHRHLVSLIGYCDENSEMILVYEYMANGPFRDHIYGSDLPPLSWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKTTNILLDENFIAKVSDFGLSKDAPGMNQTHVSTAVKGSFGYLDPEYFRCQQLTDKS

superfamily: SSF56112
IPR011009
2-170 Kinase_like
Protein kinase-like domain

VYIGELDDGTKVAVKRGNPQSEQGINEFQTEIQILSKLRHRHLVSLIGYCDENSEMILVYEYMANGPFRDHIYGSDLPPLSWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKTTNILLDENFIAKVSDFGLSKDAPGMNQTHVSTAVKGSFGYLDPEYFRCQQLTDKS

HMMPfam: PF07714
IPR001245
8-170 Pkinase_Tyr
Serine-threonine/tyrosine-protein kinase catalytic

DDGTKVAVKRGNPQSEQGINEFQTEIQILSKLRHRHLVSLIGYCDENSEMILVYEYMANGPFRDHIYGSDLPPLSWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKTTNILLDENFIAKVSDFGLSKDAPGMNQTHVSTAVKGSFGYLDPEYFRCQQLTDKS

Gene3D: G3DSA:1.10.510.10
50-169 G3DSA:1.10.510.10

YCDENSEMILVYEYMANGPFRDHIYGSDLPPLSWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKTTNILLDENFIAKVSDFGLSKDAPGMNQTHVSTAVKGSFGYLDPEYFRCQQLTDK

PatternScan: PS00108
IPR008271
108-120 PROTEIN_KINASE_ST
Serine/threonine-protein kinase, active site

IIHRDVKTTNILL


List of References

Santy Peraza-Echeverria, Andrew James-Kay, Blondy Canto-Canché, Eduardo Castillo-Castro
Structural and phylogenetic analysis of Pto-type disease resistance gene candidates in banana.
Mol. Genet. Genomics: 2007, 278(4);443-53
PubMed:17587056 WorldCat.org DOI (P p)





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Analyses

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