PRGDB00050484 (NBS-LRR-like resistance protein)

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NBS-LRR-like resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 120564790 (EF155648)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Saccharum officinarum

Comment?

Saccharum officinarum clone cRGA1-NCO376 NBS-LRR-like resistance protein mRNA, partial cds.

DNA Sequence

TGGGGGCTGGGGAAGACGACCCTTGTTACAAATGTTTATGAACGTGAAAAAATCAACTTTTCTGCTACAGCATGGATGGTTGTGTCCCAGACCTACGCTATAGAAGCTCTGCTTAGGAAGTTACTCTTGAAGGTTGGCGGTGAACAGCAGGTGTCACCTAACATTGACAAATTGGATGTCTATGATTTGAAAGAAAAAATAAAGCAAAATCTCAAAACTAGGAAATGTTTGATTGTATTGGATGATGTCTGGGACCAGGAAGTGTACCTTCAAATGTCTGATGCATTCCAAAATCTTCAATCAAGTCGCATCATCATCACAACACGGAAGAATCATGTGGCTGCTCTTGCTCACCCAACACGTCGACTTGATATCCAGCCTCTGGGAAATGCTCAGGCATTTGAGCTCTTCTGCAGAAGGACTTTCTATAACGAGAAAGACCATGCATGCCCCAGTGACCTTGTGGAGGTTGCTACTTCTATAGTAGATAGGTGCCAGGGATTGCCACTAGCGTTG


Protein sequences

Name Description Sequence
NBS-LRR-like resistance protein NBS-LRR-like resistance protein [Saccharum officinarum].

WGLGKTTLVTNVYEREKINFSATAWMVVSQTYAIEALLRKLLLKVGGEQQVSPNIDKLDVYDLKEKIKQNLKTRKCLIVLDDVWDQEVYLQMSDAFQNLQSSRIIITTRKNHVAALAHPTRRLDIQPLGNAQAFELFCRRTFYNEKDHACPSDLVEVATSIVDRCQGLPLAL

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155
2-172 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GLGKTTLVTNVYEREKINFSATAWMVVSQTYAIEALLRKLLLKVGGEQQVSPNIDKLDVYDLKEKIKQNLKTRKCLIVLDDVWDQEVYLQMSDAFQNLQSSRIIITTRKNHVAALAHPTRRLDIQPLGNAQAFELFCRRTFYNEKDHACPSDLVEVATSIVDRCQGLPLAL

superfamily: SSF52540
2-172 SSF52540

GLGKTTLVTNVYEREKINFSATAWMVVSQTYAIEALLRKLLLKVGGEQQVSPNIDKLDVYDLKEKIKQNLKTRKCLIVLDDVWDQEVYLQMSDAFQNLQSSRIIITTRKNHVAALAHPTRRLDIQPLGNAQAFELFCRRTFYNEKDHACPSDLVEVATSIVDRCQGLPLAL

Gene3D: G3DSA:3.40.50.300
2-110 G3DSA:3.40.50.300

GLGKTTLVTNVYEREKINFSATAWMVVSQTYAIEALLRKLLLKVGGEQQVSPNIDKLDVYDLKEKIKQNLKTRKCLIVLDDVWDQEVYLQMSDAFQNLQSSRIIITTRK

HMMPanther: PTHR23155:SF197
2-172 PTHR23155:SF197,OS11G0227100 PROTEIN

GLGKTTLVTNVYEREKINFSATAWMVVSQTYAIEALLRKLLLKVGGEQQVSPNIDKLDVYDLKEKIKQNLKTRKCLIVLDDVWDQEVYLQMSDAFQNLQSSRIIITTRKNHVAALAHPTRRLDIQPLGNAQAFELFCRRTFYNEKDHACPSDLVEVATSIVDRCQGLPLAL

HMMPfam: PF00931
IPR002182
2-172 NB-ARC,NBS
NB-ARC

GLGKTTLVTNVYEREKINFSATAWMVVSQTYAIEALLRKLLLKVGGEQQVSPNIDKLDVYDLKEKIKQNLKTRKCLIVLDDVWDQEVYLQMSDAFQNLQSSRIIITTRKNHVAALAHPTRRLDIQPLGNAQAFELFCRRTFYNEKDHACPSDLVEVATSIVDRCQGLPLAL

FPrintScan: PR00364
IPR000767
70-84 DISEASERSIST
Disease resistance protein

NLKTRKCLIVLDDVW

FPrintScan: PR00364
IPR000767
165-172 DISEASERSIST
Disease resistance protein

CQGLPLAL






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Analyses

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