PRGDB00050485 (hypothetical protein)
| hypothetical protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 118562886 (AB263748) |
| Gene Class | Unknown |
| Domain Type | LRR, Ser-Thr Kinase, Ser-Thr Kinase |
| Gene Species | Ipomoea trifida |
DNA Sequence
GCTGCAAATTGGGTCCAAAATTTCCAAAATGGCTGCAAACTCAGAGTGGCTTCTCTGAGCTTGATATCTCCAGTACTGGCATTTCTGATACAATGCCTAACTGGTTTTGGGACCTGTGTTCCAAAGTTGAATACTTGGCCTTATCCAACAACAAGATTGATGGTGAACTGCCTGATTTGTCAACCAAGTTTGGTGTTTTTCCAGAAATTGATCTTAGCCATAACAATTTCAGGGGTCCAATACACTCACTCCCTCCAAAAGTAAAATCCCTCTATCTCTCAAACAATAGTTTTGTGGGTTCCATTTCTTTTGTGTGCAGAGTTCTCAAATTTATGTCTATAGACCTCTCGGATAATCAATTCTCTGGAGAGATTCCCGATTGCTGGCATCACCTCTCACGTCTGAACAATCTCAATCTTGCAAACAATAATTTCTCTGGGAAAGTTCCTCCCTCTTTTGGGTATCTGTATTATCTCAAAGAATTGCAATTGAGAAACAACAACTTCACTGGAGAATTGCCATCCTCATTGCAGAACTGCACATTACTGAGAATTTTAGATTTGGGGAGAAATCAGCTCACAGGGAGAGTCCCATCATGGTTTGGAACATCTCTAGTGGACTTGATCATTGTTAACCTCAGAGAGAACCAGTTCCATGGAGAGCTTCCTCTGAGTTTGTGTCATCTTAACGACATTCATGTGTTGGATCTTTCTCAAAACAGAATTTCTGGGAAGATTCCACATTGCTTTAGCAACTTCACATATTTGAGTTTGACAAACAGTTCCCTCGGAACCACTGTAGCAAGTAAAGCATATTTTGTCTTCCAAAATGACATTGATTCCTACAAATCCAACATTTTGATTCAGTGGAAATACAATGAGCGGGAATATAGTGGCCGATTGAGACTACTGAAATTGATTGATCTTTCAAGCAATCTACTGGGAGGAGATATTCCTGAAGAATTTTCTAGTCTTCACGGATTAATTTCCTTGAACCTATCAAGAAACCATTTGACCGGGAAAATCATCCGGGAAATAGGCCAGATGGAGATGTTAGAATCTCTTGATTTGTCTTATAATCAACTTTCTGGTGAAATTCCAATAAGTTTGGGTCGTTTGAGTTTTCTTCAAATTCTTGAGTTGTCCAACAACAACTTGTCCGGGAAAATTCCATCAAGCACTCAAATGCAGAGTTTCAATGCATCTTCTTATGCCCACAACAGTGGACTGTGCGGTGATCCACTGCCCAAGTGTCCTAGAAATGTTCCAAACAAAGACGAAGATGAAGATGATGATGATGGGCTTATCACGCAGGGGTTTTACATATCAATGGTCCTGGGGTTCTCTCTTAGCTTCTGGGGATTTCTTGTCATTTTTTTCTTCAAAGGCTCATGGAGAAATGCCAGGACATCAGAGACTGAGTTTATGTCATGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| hypothetical protein | hypothetical protein [Ipomoea trifida]. | CKLGPKFPKWLQTQSGFSELDISSTGISDTMPNWFWDLCSKVEYLALSNNKIDGELPDLSTKFGVFPEIDLSHNNFRGPIHSLPPKVKSLYLSNNSFVGSISFVCRVLKFMSIDLSDNQFSGEIPDCWHHLSRLNNLNLANNNFSGKVPPSFGYLYYLKELQLRNNNFTGELPSSLQNCTLLRILDLGRNQLTGRVPSWFGTSLVDLIIVNLRENQFHGELPLSLCHLNDIHVLDLSQNRISGKIPHCFSNFTYLSLTNSSLGTTVASKAYFVFQNDIDSYKSNILIQWKYNEREYSGRLRLLKLIDLSSNLLGGDIPEEFSSLHGLISLNLSRNHLTGKIIREIGQMEMLESLDLSYNQLSGEIPISLGRLSFLQILELSNNNLSGKIPSSTQMQSFNASSYAHNSGLCGDPLPKCPRNVPNKDEDEDDDDGLITQGFYISMVLGFSLSFWGFLVIFFFKGSWRNARTSETEFMS |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52047 | 1-142 | SSF52047,LRR | CKLGPKFPKWLQTQSGFSELDISSTGISDTMPNWFWDLCSKVEYLALSNNKIDGELPDLSTKFGVFPEIDLSHNNFRGPIHSLPPKVKSLYLSNNSFVGSISFVCRVLKFMSIDLSDNQFSGEIPDCWHHLSRLNNLNLANN |
| Gene3D: G3DSA:3.80.10.10 | 1-82 | G3DSA:3.80.10.10 | CKLGPKFPKWLQTQSGFSELDISSTGISDTMPNWFWDLCSKVEYLALSNNKIDGELPDLSTKFGVFPEIDLSHNNFRGPIHS |
| HMMPanther: PTHR24420 | 45-466 | PTHR24420,FAMILY NOT NAMED | LALSNNKIDGELPDLSTKFGVFPEIDLSHNNFRGPIHSLPPKVKSLYLSNNSFVGSISFVCRVLKFMSIDLSDNQFSGEIPDCWHHLSRLNNLNLANNNFSGKVPPSFGYLYYLKELQLRNNNFTGELPSSLQNCTLLRILDLGRNQLTGRVPSWFGTSLVDLIIVNLRENQFHGELPLSLCHLNDIHVLDLSQNRISGKIPHCFSNFTYLSLTNSSLGTTVASKAYFVFQNDIDSYKSNILIQWKYNEREYSGRLRLLKLIDLSSNLLGGDIPEEFSSLHGLISLNLSRNHLTGKIIREIGQMEMLESLDLSYNQLSGEIPISLGRLSFLQILELSNNNLSGKIPSSTQMQSFNASSYAHNSGLCGDPLPKCPRNVPNKDEDEDDDDGLITQGFYISMVLGFSLSFWGFLVIFFFKGSWRN |
| HMMPanther: PTHR24420:SF473 | 45-466 | PTHR24420:SF473,SUBFAMILY NOT NAMED | LALSNNKIDGELPDLSTKFGVFPEIDLSHNNFRGPIHSLPPKVKSLYLSNNSFVGSISFVCRVLKFMSIDLSDNQFSGEIPDCWHHLSRLNNLNLANNNFSGKVPPSFGYLYYLKELQLRNNNFTGELPSSLQNCTLLRILDLGRNQLTGRVPSWFGTSLVDLIIVNLRENQFHGELPLSLCHLNDIHVLDLSQNRISGKIPHCFSNFTYLSLTNSSLGTTVASKAYFVFQNDIDSYKSNILIQWKYNEREYSGRLRLLKLIDLSSNLLGGDIPEEFSSLHGLISLNLSRNHLTGKIIREIGQMEMLESLDLSYNQLSGEIPISLGRLSFLQILELSNNNLSGKIPSSTQMQSFNASSYAHNSGLCGDPLPKCPRNVPNKDEDEDDDDGLITQGFYISMVLGFSLSFWGFLVIFFFKGSWRN |
| Gene3D: G3DSA:3.80.10.10 | 83-264 | G3DSA:3.80.10.10 | LPPKVKSLYLSNNSFVGSISFVCRVLKFMSIDLSDNQFSGEIPDCWHHLSRLNNLNLANNNFSGKVPPSFGYLYYLKELQLRNNNFTGELPSSLQNCTLLRILDLGRNQLTGRVPSWFGTSLVDLIIVNLRENQFHGELPLSLCHLNDIHVLDLSQNRISGKIPHCFSNFTYLSLTNSSLGT |
| superfamily: SSF52058 | 112-418 | SSF52058,LRR | SIDLSDNQFSGEIPDCWHHLSRLNNLNLANNNFSGKVPPSFGYLYYLKELQLRNNNFTGELPSSLQNCTLLRILDLGRNQLTGRVPSWFGTSLVDLIIVNLRENQFHGELPLSLCHLNDIHVLDLSQNRISGKIPHCFSNFTYLSLTNSSLGTTVASKAYFVFQNDIDSYKSNILIQWKYNEREYSGRLRLLKLIDLSSNLLGGDIPEEFSSLHGLISLNLSRNHLTGKIIREIGQMEMLESLDLSYNQLSGEIPISLGRLSFLQILELSNNNLSGKIPSSTQMQSFNASSYAHNSGLCGDPLPKCP |
| HMMPfam: PF00560 IPR001611
|
134-155 | LRR_1 Leucine-rich repeat
|
LNNLNLANNNFSGKVPPSFGYL |
| HMMPfam: PF12799 | 158-193 | LRR_4,Leucine Rich repeats (2 copies) | LKELQLRNNNFTGELPSSLQNCTLLRILDLGRNQLT |
| HMMPfam: PF00560 IPR001611
|
232-251 | LRR_1 Leucine-rich repeat
|
HVLDLSQNRISGKIPHCFSN |
| Gene3D: G3DSA:3.80.10.10 | 298-413 | G3DSA:3.80.10.10 | GRLRLLKLIDLSSNLLGGDIPEEFSSLHGLISLNLSRNHLTGKIIREIGQMEMLESLDLSYNQLSGEIPISLGRLSFLQILELSNNNLSGKIPSSTQMQSFNASSYAHNSGLCGDP |
| HMMPfam: PF13516 | 327-347 | LRR_6,Leucine Rich repeat | LISLNLSRNHLTGKIIREIGQ |
| HMMPfam: PF00560 IPR001611
|
351-372 | LRR_1 Leucine-rich repeat
|
LESLDLSYNQLSGEIPISLGRL |
| FPrintScan: PR00019 | 351-364 | LEURICHRPT,Leucine-rich repeat signature | LESLDLSYNQLSGE |
| FPrintScan: PR00019 | 372-385 | LEURICHRPT,Leucine-rich repeat signature | LSFLQILELSNNNL |
| HMMPfam: PF00560 IPR001611
|
375-392 | LRR_1 Leucine-rich repeat
|
LQILELSNNNLSGKIPSS |
List of Contributions
There has not been any contribution yet.
