PRGDB00050486 (NBS-LRR-like resistance protein)

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NBS-LRR-like resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 117935872 (EF059977)
Gene Class NL
Domain Type NBS, LRR
Gene Species Saccharum officinarum

Comment?

Saccharum officinarum clone RGA5-NCO376 NBS-LRR-like resistance protein gene, partial cds.

DNA Sequence

GGGGGGTCGGGGAAGACGACTCTAGCCCAGAAGATATATAATGACCACAAAATAAAAGGCAGCTTTAGTAAACAAGCGTGGATTTGTGTTTCTCAACAGTATTCTGATATTTCAGTTTTGAAAGAAGTCCTTCGGAACATCAGGGTTGATTATAAGCATGATGAGACTGTTGGAGAACTTTGTAGAAGGCTTGCAATAGCTGTCGAAAATGCAAGTTTCTTTCTTGTGTTGGATGACATTTGGCAACATGAGGTGTGGACTAATTTACTCAGAGCCCCATTAAACACTGCAGCTAGAGGAATAATTCTGGTCACAACTCGCAATGATACAGTTGCACGAGCAATTGGGGTGGAAGAAATTCATCGAGTAGAATTGATGTCAGAAGAAGTAGGATGGGAATTGCTTTTAAAGAGTTTGAACATTAGCAAAGAAAGTGAAGTAGAAAACCTACGAGCTCTAGGGGTTGACATTGTTCGTTTGTGTGGTGGCCTCCCCCTCGCCTTA


Protein sequences

Name Description Sequence
NBS-LRR-like resistance protein NBS-LRR-like resistance protein [Saccharum officinarum].

GGSGKTTLAQKIYNDHKIKGSFSKQAWICVSQQYSDISVLKEVLRNIRVDYKHDETVGELCRRLAIAVENASFFLVLDDIWQHEVWTNLLRAPLNTAARGIILVTTRNDTVARAIGVEEIHRVELMSEEVGWELLLKSLNISKESEVENLRALGVDIVRLCGGLPLAL


Domains

Domain Start-End Description Sequence

HMMPfam: PF00931
IPR002182
1-168 NB-ARC,NBS
NB-ARC

GGSGKTTLAQKIYNDHKIKGSFSKQAWICVSQQYSDISVLKEVLRNIRVDYKHDETVGELCRRLAIAVENASFFLVLDDIWQHEVWTNLLRAPLNTAARGIILVTTRNDTVARAIGVEEIHRVELMSEEVGWELLLKSLNISKESEVENLRALGVDIVRLCGGLPLAL

HMMPanther: PTHR23155:SF121
1-153 PTHR23155:SF121,SUBFAMILY NOT NAMED

GGSGKTTLAQKIYNDHKIKGSFSKQAWICVSQQYSDISVLKEVLRNIRVDYKHDETVGELCRRLAIAVENASFFLVLDDIWQHEVWTNLLRAPLNTAARGIILVTTRNDTVARAIGVEEIHRVELMSEEVGWELLLKSLNISKESEVENLRAL

superfamily: SSF52540
1-168 SSF52540

GGSGKTTLAQKIYNDHKIKGSFSKQAWICVSQQYSDISVLKEVLRNIRVDYKHDETVGELCRRLAIAVENASFFLVLDDIWQHEVWTNLLRAPLNTAARGIILVTTRNDTVARAIGVEEIHRVELMSEEVGWELLLKSLNISKESEVENLRALGVDIVRLCGGLPLAL

HMMPanther: PTHR23155
1-153 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GGSGKTTLAQKIYNDHKIKGSFSKQAWICVSQQYSDISVLKEVLRNIRVDYKHDETVGELCRRLAIAVENASFFLVLDDIWQHEVWTNLLRAPLNTAARGIILVTTRNDTVARAIGVEEIHRVELMSEEVGWELLLKSLNISKESEVENLRAL

Gene3D: G3DSA:3.40.50.300
2-112 G3DSA:3.40.50.300

GSGKTTLAQKIYNDHKIKGSFSKQAWICVSQQYSDISVLKEVLRNIRVDYKHDETVGELCRRLAIAVENASFFLVLDDIWQHEVWTNLLRAPLNTAARGIILVTTRNDTVA






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Analyses

Blast

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